genome.fa.s656.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  109  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20289644--20289830	3	68.0	3	68	18	104	56	3	2	37	1.29
20289646--20289809	40	4.3	39	72	19	123	56	2	2	38	1.26
20289645--20289810	8	19.9	8	71	18	99	57	2	2	37	1.25
20293599--20293648	26	1.9	26	92	8	84	40	8	6	46	1.58
20298064--20298205	24	6.0	23	72	8	113	35	14	7	42	1.73
20299678--20299703	11	2.4	11	100	0	52	76	7	0	15	0.99
20301058--20301102	20	2.4	18	78	10	54	31	6	6	55	1.52
20301082--20301135	16	3.3	16	75	12	56	29	5	11	53	1.59
20301110--20301265	24	6.6	24	70	14	110	31	2	11	54	1.50
20301124--20301247	47	2.7	46	84	6	155	33	1	10	54	1.45
20301238--20301349	32	3.8	32	70	20	107	33	7	7	51	1.56
20301281--20301326	23	2.0	23	87	4	67	28	8	6	56	1.54
20301442--20301497	24	2.3	25	87	6	80	33	3	10	51	1.54
20302404--20302436	12	2.5	13	85	14	50	27	0	0	72	0.85
20302496--20302570	9	8.3	9	72	11	55	77	2	0	20	0.89
20302497--20302568	5	13.8	5	76	21	60	76	2	0	20	0.91
20302493--20302567	18	4.1	20	74	20	74	76	2	0	21	0.92
20305614--20305652	18	2.2	18	86	9	53	35	2	2	58	1.25
20314961--20314991	3	10.3	3	100	0	62	32	0	0	67	0.91
20315301--20315346	15	3.1	15	75	12	51	41	6	2	50	1.40
20319922--20320054	70	1.9	70	95	3	241	30	12	22	33	1.92
20320576--20320616	15	2.7	15	80	0	55	53	0	2	43	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20326837--20326875	13	3.0	13	76	0	51	56	0	0	43	0.99
20326926--20326964	18	2.1	19	95	4	71	33	0	0	66	0.92
20326985--20327014	10	3.1	10	90	9	53	56	0	0	43	0.99
20327402--20327443	20	2.0	22	90	9	70	54	0	0	45	0.99
20329020--20329070	18	2.8	18	72	3	57	41	1	0	56	1.10
20329029--20329098	31	2.5	28	80	15	74	45	2	1	50	1.25
20329145--20329177	15	2.1	16	88	5	50	21	0	0	78	0.75
20330012--20330062	24	2.1	24	88	0	75	33	9	11	45	1.74
20330943--20331001	26	2.3	25	80	13	66	57	0	8	33	1.29
20334003--20334027	13	1.9	13	100	0	50	40	0	0	60	0.97
20334224--20334296	33	2.2	31	86	11	101	58	1	13	26	1.43
20336193--20336226	16	2.1	17	88	5	52	58	2	2	35	1.28
20339401--20339449	18	2.7	18	83	0	62	24	10	34	30	1.89
20346327--20346378	10	5.1	10	78	17	54	73	0	3	23	1.00
20346709--20346743	15	2.4	14	86	9	52	51	17	0	31	1.45
20346831--20346900	31	2.3	31	85	5	97	47	25	0	27	1.53
20346878--20346919	22	1.9	22	90	0	66	47	26	2	23	1.64
20346909--20346946	14	2.7	14	87	0	58	50	31	2	15	1.58
20346956--20347031	30	2.5	30	85	6	91	46	25	0	28	1.53
20347100--20347138	19	2.1	19	85	0	51	43	15	0	41	1.46
20352905--20352944	2	20.0	2	94	0	71	52	0	0	47	1.00
20356483--20356508	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20361902--20361948	21	2.2	21	88	7	69	27	2	4	65	1.22
20363342--20363375	17	2.1	16	89	10	52	64	0	0	35	0.94
20364397--20364487	33	2.7	34	78	13	91	56	0	0	43	0.99
20364426--20364483	21	2.6	22	81	13	66	53	0	0	46	1.00
20364446--20364483	13	2.9	13	88	0	58	52	0	0	47	1.00
20364515--20364568	28	2.0	27	92	3	90	48	3	7	40	1.49
20366635--20366759	61	2.0	61	92	3	207	49	13	17	19	1.79
20366972--20367137	61	2.7	61	95	1	289	47	13	18	19	1.82
20386210--20386241	2	15.5	2	93	6	55	46	0	3	50	1.17
20386451--20386482	10	3.4	10	91	8	50	87	0	6	6	0.67
20388204--20388255	19	2.6	19	85	11	61	63	1	1	32	1.16
20388210--20388300	46	2.0	46	80	8	105	63	2	3	30	1.22
20389724--20389759	18	1.9	19	88	5	56	69	11	0	19	1.18
20391813--20391891	40	2.0	40	92	0	131	25	17	18	37	1.93
20393194--20393236	12	3.8	12	84	12	63	37	9	16	37	1.81
20394413--20394447	2	17.5	2	87	0	52	48	2	2	45	1.32
20395477--20395511	2	17.5	2	87	0	52	45	2	2	48	1.32
20409195--20409241	24	2.0	23	83	4	58	48	0	0	51	1.00
20413615--20413666	3	17.3	3	100	0	104	67	0	0	32	0.91
20414071--20414156	2	42.5	2	80	6	84	54	4	0	40	1.21
20420366--20420413	19	2.5	19	96	0	87	47	10	8	33	1.68
20427092--20427150	29	2.0	29	93	0	100	38	20	6	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20427947--20428074	66	1.9	66	91	0	211	27	12	23	36	1.91
20433407--20433480	35	2.1	35	100	0	148	22	12	10	54	1.68
20433746--20433773	2	14.0	2	100	0	56	50	0	0	50	1.00
20438331--20438368	17	2.2	17	86	9	51	47	2	2	47	1.30
20446436--20447098	187	3.5	186	81	5	696	38	10	10	39	1.75
20447857--20447908	12	4.3	12	85	0	59	26	7	26	38	1.83
20447901--20447953	25	2.1	25	92	0	88	24	7	24	43	1.80
20451212--20451841	307	2.1	306	81	4	716	36	13	13	35	1.85
20454898--20455054	52	3.0	53	83	1	167	26	23	7	42	1.81
20455079--20455110	11	2.9	11	95	0	55	46	28	0	25	1.53
20455169--20455231	32	2.0	32	83	0	81	20	4	7	66	1.36
20463271--20463303	15	2.2	16	89	10	52	51	0	3	45	1.16
20465816--20465857	22	2.0	21	85	4	57	14	16	0	69	1.20
20471707--20471834	66	1.9	66	92	3	213	28	11	23	36	1.90
20471836--20471886	24	2.1	24	96	0	93	56	9	17	15	1.65
20474713--20474756	22	2.0	22	95	0	79	36	11	9	43	1.72
20478848--20478898	25	2.0	26	85	7	70	19	15	3	60	1.50
20479104--20479134	1	31.0	1	100	0	62	100	0	0	0	0.00
20479557--20479583	2	13.5	2	100	0	54	51	0	0	48	1.00
20486146--20486181	2	18.0	2	88	0	54	50	5	0	44	1.25
20497782--20497818	17	2.2	17	90	0	56	32	0	0	67	0.91
20506271--20506298	13	2.2	13	100	0	56	53	14	14	17	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20506310--20506338	2	14.5	2	100	0	58	51	0	0	48	1.00
20506408--20506454	23	2.0	23	95	0	85	36	12	14	36	1.85
20507939--20507963	13	1.9	13	100	0	50	36	0	16	48	1.46
20514255--20514287	2	16.5	2	100	0	66	51	0	0	48	1.00
20516262--20516300	11	3.6	10	83	16	51	64	5	0	30	1.15
20516265--20516298	14	2.4	15	90	9	54	64	5	0	29	1.17
20516474--20516510	19	1.9	19	94	0	65	54	2	0	43	1.14
20516817--20516847	2	15.5	2	100	0	62	48	0	0	51	1.00
20517469--20517533	31	2.1	31	85	2	85	24	3	12	60	1.47
20517643--20517709	22	3.0	23	78	8	75	41	7	4	46	1.52
20517755--20517825	22	3.2	22	86	11	101	35	8	8	47	1.64
20518375--20518430	3	18.7	3	88	0	76	28	5	0	66	1.14
20518423--20518451	8	3.6	8	100	0	58	10	0	0	89	0.48
20519688--20519802	50	2.3	49	80	11	119	66	3	6	23	1.29
20520013--20520047	18	1.9	18	94	0	61	88	0	5	5	0.63
20520831--20520979	22	6.8	22	76	3	140	36	5	9	48	1.58
20520831--20521022	66	2.9	66	80	5	192	39	6	7	46	1.58
20520830--20521011	22	8.2	22	75	4	134	39	6	7	46	1.57
20520807--20521021	44	4.9	44	75	4	110	38	7	7	46	1.61
20521023--20521082	22	2.7	22	81	0	66	35	6	13	45	1.70
20521139--20521205	22	3.0	22	77	2	71	38	7	4	49	1.51
20521461--20521600	22	6.4	21	75	8	77	40	10	4	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20521685--20522004	22	14.5	22	68	11	102	37	10	3	47	1.57
20521649--20521738	44	2.0	44	82	4	110	37	12	3	46	1.58
20521773--20521871	42	2.2	44	87	10	141	37	10	3	49	1.52
20522036--20522100	22	3.0	22	75	6	69	30	6	9	53	1.57
20522076--20522143	22	3.1	21	75	10	64	32	10	4	52	1.55
20522112--20522162	22	2.3	22	83	6	59	37	9	1	50	1.47
20522254--20522301	22	2.2	22	85	7	62	31	8	0	60	1.26
20522285--20522464	22	8.2	22	74	9	93	36	8	4	50	1.54
20522375--20522500	65	1.9	65	81	0	153	35	8	3	51	1.51
20522495--20522574	22	3.6	22	72	9	56	32	7	8	51	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127