genome.fa.s656.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  27  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5806302--5806352	17	3.2	16	76	15	52	15	3	1	78	0.99
5806365--5806502	58	2.4	57	92	1	231	40	7	15	36	1.75
5815251--5815287	16	2.3	16	90	0	56	56	8	18	16	1.64
5818757--5818897	48	2.9	49	83	2	185	31	12	13	41	1.82
5818757--5818915	49	3.3	49	80	5	171	30	13	15	40	1.85
5823011--5823042	10	3.0	11	90	9	57	53	0	0	46	1.00
5823893--5823946	17	3.1	17	86	7	74	11	0	12	75	1.04
5823881--5823927	24	1.9	25	91	4	78	10	0	12	76	1.02
5823906--5823960	18	3.1	17	78	21	60	14	0	9	76	1.02
5823955--5823999	18	2.5	17	79	10	54	33	0	0	66	0.92
5823955--5824001	12	3.9	12	75	10	51	31	0	0	68	0.90
5824292--5824945	47	13.7	48	82	7	715	37	22	12	27	1.91
5824292--5824949	192	3.4	192	83	5	800	37	22	12	27	1.91
5824286--5824945	239	2.8	235	82	7	796	37	22	13	26	1.91
5831273--5831610	168	2.0	168	91	1	543	26	18	15	39	1.91
5836678--5836734	24	2.3	25	85	8	73	22	0	3	73	0.98
5837824--5837913	23	3.9	22	75	10	72	15	2	5	76	1.07
5837873--5837916	19	2.3	19	85	14	56	27	0	2	70	0.99
5837839--5837907	28	2.4	30	77	15	74	18	0	4	76	0.94
5840293--5840357	29	2.2	29	81	10	80	49	3	0	47	1.17
5840334--5840369	18	2.1	17	89	5	54	61	2	0	36	1.11
5840455--5840500	23	1.9	25	86	8	69	54	6	4	34	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5845462--5845590	59	2.2	59	84	4	161	48	4	13	33	1.64
5845481--5845574	31	3.1	30	71	17	70	48	4	17	29	1.65
5846779--5846811	17	1.9	17	93	0	57	18	15	3	63	1.43
5848746--5848772	5	5.4	5	100	0	54	44	0	0	55	0.99
5849879--5849915	3	12.3	3	100	0	74	35	0	0	64	0.94
5855067--5855119	22	2.4	23	81	15	67	45	0	0	54	0.99
5855082--5855134	20	2.5	20	78	21	56	49	0	0	50	1.00
5855683--5855737	24	2.3	23	79	14	58	18	3	0	78	0.90
5855842--5855883	17	2.5	17	76	3	50	23	4	2	69	1.20
5856605--5856661	29	2.0	28	83	13	71	47	0	5	47	1.24
5856717--5856750	18	2.0	17	88	11	52	26	14	5	52	1.64
5859844--5859926	33	2.5	33	86	1	114	18	32	6	43	1.74
5869108--5869202	14	6.4	15	68	20	58	52	0	1	46	1.07
5871241--5871269	8	3.8	8	95	4	51	13	0	0	86	0.58
5872242--5872299	24	2.4	24	77	5	64	60	3	1	34	1.24
5872239--5872298	25	2.5	24	75	2	66	61	3	1	33	1.22
5872225--5872323	25	3.9	24	67	17	65	57	2	4	36	1.29
5872225--5872326	26	4.0	25	73	13	91	57	1	3	36	1.28
5872323--5872367	21	2.2	20	84	4	54	46	2	4	46	1.35
5873840--5873893	24	2.3	23	82	14	67	46	16	22	14	1.84
5874041--5874108	34	2.0	34	91	0	109	47	5	10	36	1.62
5874637--5874677	16	2.5	17	76	11	50	46	0	2	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5874651--5874715	26	2.5	26	78	11	71	46	0	1	52	1.10
5885091--5885219	63	2.0	63	98	0	249	48	13	6	31	1.70
5887843--5887875	3	11.0	3	100	0	66	66	0	0	33	0.92
5887974--5888025	21	2.5	21	78	15	63	67	0	1	30	1.02
5888096--5888127	2	16.0	2	100	0	64	50	0	0	50	1.00
5890217--5890258	2	21.0	2	90	0	66	54	0	0	45	0.99
5892874--5892943	30	2.3	31	87	5	106	44	2	1	51	1.25
5897012--5897047	14	2.6	14	95	4	65	63	0	0	36	0.94
5897096--5897147	13	4.0	13	78	9	52	50	0	1	48	1.12
5897222--5897290	37	1.9	36	88	5	104	36	0	1	62	1.04
5897238--5897292	12	4.4	13	70	9	51	34	0	1	63	1.05
5900206--5900238	2	16.5	2	93	0	57	48	0	3	48	1.17
5908148--5908179	2	16.0	2	93	0	55	46	0	3	50	1.17
5915885--5915984	47	2.1	47	96	0	182	20	17	24	39	1.92
5917332--5917736	202	2.0	202	94	0	702	27	11	19	41	1.86
5917805--5917880	29	2.6	29	100	0	152	21	6	28	43	1.77
5924758--5924782	11	2.3	11	100	0	50	8	0	0	92	0.40
5925037--5925062	5	5.2	5	100	0	52	80	0	0	19	0.71
5925170--5925241	29	2.5	29	81	4	83	61	0	4	34	1.16
5925806--5925838	16	2.0	17	88	5	50	69	3	6	21	1.24
5926207--5926250	6	7.5	6	89	5	63	77	0	0	22	0.77
5926207--5926251	17	2.6	18	82	7	65	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5926207--5926250	23	1.9	23	90	0	70	77	0	0	22	0.77
5927358--5927408	23	2.3	23	86	3	68	21	19	9	49	1.77
5927422--5927471	24	2.0	25	92	3	84	56	4	10	30	1.51
5927613--5927656	6	7.8	6	89	5	58	31	0	2	65	1.05
5928091--5928126	4	8.8	4	87	6	54	27	0	0	72	0.85
5928079--5928126	17	2.9	17	84	3	62	29	0	0	70	0.87
5928144--5928178	16	2.2	16	89	0	52	60	0	0	40	0.97
5928362--5928392	16	1.9	16	93	0	53	61	0	3	35	1.12
5932857--5932912	23	2.4	23	84	0	67	33	5	12	48	1.64
5932865--5932925	23	2.8	21	73	9	59	34	8	8	49	1.62
5933161--5933205	17	2.6	17	89	0	63	28	11	17	42	1.84
5933173--5933213	17	2.4	17	87	0	55	31	7	17	43	1.76
5933841--5934073	43	5.5	43	73	10	156	26	15	12	45	1.82
5933886--5934097	43	5.0	43	74	6	180	26	15	12	45	1.82
5934328--5934365	6	6.7	6	87	6	53	28	0	2	68	1.03
5934329--5934360	16	2.0	16	93	0	55	31	0	3	65	1.08
5935870--5935927	26	2.2	26	84	6	73	20	27	29	22	1.99
5936058--5936089	3	10.7	3	100	0	64	31	0	0	68	0.90
5936574--5936610	19	1.9	19	94	0	65	32	2	21	43	1.67
5938587--5938616	12	2.5	12	94	0	51	16	0	3	80	0.85
5938709--5938770	12	4.8	13	74	20	51	79	0	4	16	0.90
5938710--5938770	20	3.2	18	82	13	68	80	0	4	14	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5938709--5938763	24	2.2	24	87	9	76	80	0	3	16	0.86
5939605--5939638	11	3.2	11	87	4	52	76	5	17	0	0.98
5939638--5939685	5	9.2	5	82	8	60	58	0	4	37	1.18
5939808--5939847	16	2.5	16	91	0	62	42	25	22	10	1.84
5940036--5940627	238	2.5	237	79	5	642	43	14	22	19	1.87
5940012--5940627	119	5.2	118	78	5	530	42	14	23	19	1.88
5941425--5941451	11	2.5	11	100	0	54	0	7	0	92	0.38
5951560--5951595	10	3.6	10	88	0	54	19	0	2	77	0.88
5952587--5952625	15	2.6	15	84	8	53	74	0	23	2	0.94
5952631--5952679	5	10.2	5	82	8	66	59	0	4	36	1.17
5952631--5952679	9	5.1	10	85	5	66	59	0	4	36	1.17
5952705--5952757	3	17.7	3	96	0	97	69	0	0	30	0.88
5955382--5955418	4	9.0	4	90	3	56	27	27	0	45	1.54
5969590--5969948	110	3.3	110	78	1	326	22	22	14	40	1.90
5970652--5970719	3	22.7	3	79	5	75	29	5	1	63	1.27
5971521--5971567	18	2.7	17	84	12	60	17	8	0	74	1.05
5972138--5972185	22	2.2	22	92	0	78	31	16	2	50	1.57
5972207--5972241	17	2.1	17	89	10	54	20	5	17	57	1.60
5972308--5972363	16	3.5	16	71	9	51	32	1	12	53	1.49
5972346--5972438	31	3.1	30	82	11	102	27	6	13	51	1.66
5972424--5972496	12	6.4	12	67	12	55	30	5	10	53	1.58
5972311--5972550	56	4.2	57	78	14	230	30	5	12	52	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5972557--5972640	33	2.5	33	86	3	107	28	5	10	54	1.58
5972572--5972613	21	2.0	20	90	4	66	26	4	11	57	1.54
5972901--5972971	18	4.1	18	73	10	58	35	4	8	52	1.51
5973424--5973470	10	4.8	10	84	2	60	61	0	25	12	1.31
5973424--5973470	15	3.2	15	75	3	51	61	0	25	12	1.31
5974564--5974620	28	2.0	28	83	6	71	77	0	15	7	0.98
5975297--5975354	24	2.6	24	81	10	70	31	15	18	34	1.93
5975583--5975657	23	3.3	23	71	3	71	33	5	12	49	1.62
5975798--5975841	17	2.6	17	92	0	70	29	9	15	45	1.77
5975846--5975900	17	3.2	16	79	5	56	34	16	14	34	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127