genome.fa.s656.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  111  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20731497--20731539	17	2.4	18	81	14	54	44	0	6	48	1.29
20734892--20734918	2	13.5	2	100	0	54	0	48	0	51	1.00
20741096--20741128	2	16.5	2	93	0	57	0	45	0	54	0.99
20742292--20742353	24	2.6	23	87	5	70	56	0	6	37	1.25
20742307--20742354	24	2.0	24	95	0	87	52	0	6	41	1.27
20744282--20744329	18	2.5	20	76	16	55	37	2	2	58	1.22
20744331--20744408	21	3.7	21	70	16	63	41	5	2	51	1.38
20746738--20746778	20	2.0	20	90	0	64	78	0	4	17	0.93
20767943--20767975	16	2.1	16	100	0	66	48	0	0	51	1.00
20770624--20770659	17	2.1	17	90	10	56	33	2	0	63	1.08
20771412--20771438	2	13.5	2	100	0	54	48	0	0	51	1.00
20772146--20772176	2	16.0	2	93	6	55	51	0	0	48	1.00
20785229--20785360	67	2.0	67	83	0	165	41	8	3	46	1.49
20789598--20789641	22	2.0	22	95	0	79	43	13	11	31	1.80
20791207--20791272	33	2.0	33	96	0	123	31	0	19	48	1.49
20791649--20791673	12	2.1	12	100	0	50	44	8	32	16	1.76
20793470--20793583	32	3.6	32	77	9	101	54	0	2	42	1.20
20793632--20793688	17	3.6	17	68	24	52	45	0	0	54	0.99
20793626--20793663	20	1.9	20	84	10	51	47	0	0	52	1.00
20793658--20793834	90	2.0	92	92	3	297	44	1	1	53	1.15
20794509--20795127	312	2.0	313	81	7	722	45	8	7	38	1.63
20795307--20795381	34	2.2	34	80	0	87	34	2	10	52	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20795902--20795928	14	1.9	14	100	0	54	22	0	0	77	0.76
20797288--20797345	6	9.7	6	90	5	57	20	0	0	79	0.74
20797286--20797334	3	16.3	3	83	8	64	26	0	0	73	0.83
20797818--20797882	26	2.6	25	73	20	64	55	1	10	32	1.44
20799132--20799182	26	1.9	27	84	11	70	41	1	3	52	1.31
20799243--20799268	2	13.0	2	100	0	52	50	0	0	50	1.00
20799665--20799703	19	2.0	20	85	10	53	28	15	15	41	1.87
20801957--20802009	27	2.0	27	84	0	70	50	0	3	45	1.19
20802146--20802171	13	2.0	13	100	0	52	69	0	0	30	0.89
20812155--20812206	24	2.1	26	85	7	72	40	11	13	34	1.81
20816260--20816284	13	1.9	13	100	0	50	12	0	0	88	0.53
20816260--20816329	32	2.2	32	82	12	81	27	0	2	70	1.02
20819913--20819968	28	2.0	28	92	0	94	51	8	7	32	1.60
20820622--20820647	12	2.2	12	100	0	52	53	0	0	46	1.00
20826115--20826255	76	1.9	76	92	0	237	19	11	23	46	1.82
20831112--20831159	19	2.7	18	80	6	53	79	8	2	10	1.02
20831106--20831153	24	2.0	24	83	0	60	75	10	2	12	1.14
20833111--20833152	2	21.0	2	100	0	84	50	0	50	0	1.00
20835482--20835547	33	2.0	33	100	0	132	12	21	30	36	1.90
20844874--20844992	58	2.1	58	85	0	157	36	6	9	47	1.62
20844972--20845079	39	2.7	41	75	21	111	39	3	5	50	1.43
20844960--20845503	80	6.9	80	73	9	303	39	8	7	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20844937--20845503	158	3.6	157	83	5	701	39	8	7	45	1.61
20845609--20845673	20	3.0	23	74	10	59	56	1	0	41	1.08
20846704--20846938	126	1.9	122	81	8	287	38	9	15	35	1.81
20846704--20846935	64	3.8	59	75	11	189	39	9	15	35	1.80
20847231--20847377	63	2.3	63	84	4	190	36	13	14	36	1.85
20848696--20848720	13	1.9	13	100	0	50	20	0	0	80	0.72
20848893--20848958	5	13.0	5	85	9	64	77	4	0	18	0.94
20848926--20848959	6	5.8	6	93	6	61	85	0	0	14	0.60
20849796--20849865	10	7.2	9	73	23	54	81	0	2	15	0.81
20849777--20849865	30	3.0	28	82	12	101	79	0	4	15	0.88
20849791--20849884	17	5.9	15	74	18	59	78	0	2	19	0.85
20849772--20849884	12	9.2	12	76	16	63	77	0	4	17	0.92
20849791--20849884	20	4.8	18	79	15	73	78	0	2	19	0.85
20850243--20850506	113	2.3	114	80	1	298	35	12	25	26	1.92
20858197--20858230	15	2.2	16	89	5	52	50	5	0	44	1.26
20863666--20863808	59	2.4	58	78	13	139	33	10	11	44	1.74
20865927--20865984	17	3.2	16	72	23	53	29	0	5	65	1.14
20867591--20867621	14	2.2	14	94	0	53	45	3	6	45	1.45
20867903--20868105	62	3.2	62	79	5	167	32	15	14	36	1.89
20868263--20868398	62	2.2	63	82	5	170	34	11	12	41	1.80
20868294--20868525	64	3.7	64	77	7	197	32	13	13	40	1.83
20878367--20878396	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20878671--20878713	20	2.1	21	91	4	70	55	6	23	13	1.62
20880635--20880694	23	2.7	23	89	2	95	35	43	6	15	1.72
20880720--20880762	22	2.0	22	90	0	68	37	44	6	11	1.68
20881466--20881547	37	2.2	37	84	2	112	29	31	15	23	1.95
20881778--20881816	20	2.0	20	89	0	60	64	7	2	25	1.33
20881904--20881936	3	11.0	3	100	0	66	66	0	0	33	0.92
20889050--20889088	19	2.1	18	85	4	51	33	10	10	46	1.72
20889364--20889392	3	9.7	3	100	0	58	65	0	0	34	0.93
20890790--20890868	40	2.0	40	97	0	149	35	12	5	46	1.64
20895759--20895830	31	2.3	31	80	4	83	29	13	13	43	1.83
20897709--20897787	40	2.0	40	92	0	131	34	15	5	45	1.68
20901604--20901643	2	20.0	2	100	0	80	50	0	50	0	1.00
20903376--20903525	76	2.0	76	90	2	239	39	16	6	38	1.74
20905207--20905244	20	2.0	18	90	10	58	34	7	10	47	1.67
20905207--20905268	16	3.6	16	78	8	52	30	6	11	51	1.63
20905406--20905604	40	5.0	40	83	9	239	29	5	12	53	1.59
20905471--20905530	18	3.2	18	77	13	68	31	5	11	51	1.60
20905407--20905589	39	4.7	39	87	6	246	30	4	12	53	1.57
20905613--20905674	32	1.9	32	86	0	88	29	3	11	56	1.50
20905651--20905709	19	3.0	20	80	14	68	30	6	6	55	1.52
20905682--20905725	19	2.3	19	84	4	52	29	4	11	54	1.56
20908405--20908438	16	2.1	16	94	0	59	50	11	20	17	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20917560--20917593	3	11.3	3	100	0	68	67	0	0	32	0.91
20918322--20918357	10	3.7	10	88	7	56	22	0	0	77	0.76
20918421--20918465	16	2.8	16	83	10	56	73	2	0	24	0.95
20918700--20918964	43	6.1	44	86	5	319	46	19	11	23	1.82
20926453--20926492	16	2.7	14	82	14	53	32	7	20	40	1.80
20929777--20929805	3	9.7	3	100	0	58	68	0	0	31	0.89
20934585--20934696	55	2.0	56	91	1	181	32	13	9	44	1.76
20941571--20941625	20	2.7	21	73	15	53	30	0	5	63	1.17
20943398--20943439	19	2.2	19	87	8	59	23	0	2	73	0.94
20946986--20947097	55	2.0	56	91	1	181	31	14	10	43	1.79
20952780--20952809	2	15.0	2	100	0	60	50	0	50	0	1.00
20955739--20955780	19	2.2	19	87	8	59	23	0	2	73	0.94
20956408--20956465	20	3.0	20	90	5	93	36	8	10	44	1.69
20956489--20956580	20	4.6	21	83	5	66	31	6	9	52	1.60
20956532--20956580	20	2.5	20	96	0	89	32	8	6	53	1.55
20956590--20956840	20	12.4	21	67	15	138	30	4	12	52	1.60
20956590--20956840	41	6.2	41	83	5	305	30	4	12	52	1.60
20956590--20956837	79	3.1	81	80	8	283	30	4	12	52	1.60
20956849--20956910	32	1.9	32	86	0	88	29	3	12	54	1.53
20956876--20956944	24	3.3	20	82	15	70	30	4	10	55	1.53
20956887--20956944	19	2.9	20	82	14	75	31	5	8	55	1.52
20963600--20963637	20	2.0	20	89	5	60	71	7	0	21	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20963876--20963909	10	3.5	10	88	8	52	23	0	0	76	0.79
20963936--20964026	4	23.0	4	68	18	57	69	6	0	24	1.12
20963938--20964006	36	1.9	36	85	11	97	68	5	0	26	1.12
20963936--20964020	36	2.4	36	77	13	95	70	5	0	23	1.09
20964228--20964504	44	6.4	42	86	7	253	42	19	14	23	1.87
20964256--20964522	44	6.1	44	92	2	416	44	20	13	21	1.85
20965526--20965578	10	5.3	10	80	6	54	5	9	0	84	0.76
20965526--20965570	21	2.2	20	88	7	65	4	11	0	84	0.76
20972009--20972048	14	2.6	16	84	15	66	35	5	17	42	1.71
20972766--20972802	15	2.5	15	87	12	58	54	8	18	18	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127