genome.fa.s656.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  7  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1599578--1599657	40	1.9	41	87	10	117	15	0	12	72	1.12
1600049--1600520	48	9.8	48	82	3	543	39	20	11	29	1.86
1600047--1600520	97	4.9	96	81	3	547	39	20	10	29	1.86
1599998--1600520	145	3.6	145	83	4	610	39	20	11	29	1.87
1600512--1600837	40	8.3	39	75	2	274	40	19	13	25	1.89
1600512--1600844	79	4.2	79	91	0	522	41	20	13	25	1.88
1608951--1609463	58	8.7	58	79	11	558	34	13	6	45	1.70
1608951--1609462	116	4.3	116	89	6	753	34	13	6	44	1.70
1610382--1610446	26	2.6	25	81	13	89	60	3	3	33	1.28
1610475--1610531	31	1.9	28	86	10	78	66	0	3	29	1.08
1610495--1610536	7	5.9	7	81	13	50	66	2	2	28	1.16
1610560--1610590	13	2.3	14	94	5	55	74	3	0	22	0.96
1610554--1610593	20	2.0	20	90	0	62	72	2	0	25	0.97
1610782--1611216	42	10.1	42	81	7	455	40	18	15	25	1.90
1610782--1611216	85	5.1	84	79	8	448	40	18	15	25	1.90
1612205--1612266	14	4.5	13	79	18	56	8	17	0	74	1.06
1612205--1612281	28	2.8	27	77	11	84	9	18	0	72	1.10
1617140--1617185	15	3.0	15	81	6	56	6	32	4	56	1.45
1622689--1623022	59	5.7	58	81	8	399	35	14	7	43	1.72
1622685--1623023	115	2.9	115	89	3	498	35	13	7	43	1.73
1622685--1623035	117	3.0	115	87	6	490	35	13	7	44	1.72
1623928--1623959	16	1.9	17	93	6	57	81	0	0	18	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1623982--1624094	18	6.3	18	74	19	62	64	2	4	28	1.26
1623931--1624095	43	3.8	42	78	16	144	65	1	4	28	1.21
1623936--1624092	21	7.1	22	70	13	78	66	1	4	27	1.21
1624022--1624094	14	4.8	14	73	15	56	64	1	4	30	1.20
1624008--1624098	22	4.0	24	81	17	106	63	1	4	30	1.21
1624043--1624117	26	2.9	26	86	5	91	66	2	4	26	1.22
1624214--1624251	7	5.6	7	90	6	51	76	5	0	18	0.97
1624214--1624254	20	2.0	21	90	4	66	78	4	0	17	0.93
1624214--1624254	13	3.1	13	86	6	55	78	4	0	17	0.93
1628831--1628876	12	3.8	12	80	16	51	32	2	0	65	1.05
1629935--1630004	16	4.3	16	88	1	95	15	0	10	74	1.07
1630104--1630171	29	2.4	29	87	2	102	35	19	20	25	1.96
1635983--1636051	32	2.2	32	94	0	120	28	13	18	39	1.88
1637514--1637543	3	10.0	3	100	0	60	0	0	66	33	0.92
1639588--1639628	17	2.5	17	88	4	57	29	0	2	68	1.03
1652906--1652992	30	2.9	30	82	3	104	40	14	2	42	1.59
1660470--1660527	28	2.1	28	100	0	116	22	20	3	53	1.60
1675419--1675457	19	2.1	18	85	4	51	53	2	0	43	1.14
1675850--1675881	2	16.5	2	93	6	57	50	0	0	50	1.00
1679139--1679177	19	2.2	17	86	9	51	58	2	2	35	1.25
1681630--1681667	13	3.0	13	80	3	51	44	0	0	55	0.99
1681697--1681735	17	2.4	16	87	8	53	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1686720--1686861	54	2.6	54	86	4	185	50	4	7	37	1.53
1686850--1686888	18	2.2	18	86	9	53	35	2	2	58	1.25
1686876--1686981	52	2.1	50	82	3	122	48	4	11	35	1.60
1689436--1689494	28	2.1	28	87	0	82	33	1	1	62	1.15
1690885--1690922	13	2.9	13	88	7	51	44	2	0	52	1.14
1692213--1692311	18	5.5	18	71	7	76	32	20	28	19	1.97
1692213--1692311	36	2.8	36	80	0	117	32	20	28	19	1.97
1697890--1697947	27	2.2	26	84	9	73	37	1	0	60	1.07
1698652--1698696	3	14.7	3	95	4	81	66	0	33	0	0.92
1701983--1702025	22	2.0	22	86	9	61	32	9	2	55	1.44
1706937--1706961	2	12.5	2	100	0	50	0	48	0	52	1.00
1725332--1725369	2	19.0	2	100	0	76	50	0	0	50	1.00
1729445--1729490	14	3.2	14	78	6	56	50	2	2	45	1.26
1731278--1731311	17	2.0	17	88	0	50	47	2	2	47	1.32
1731650--1731691	13	3.2	13	86	6	50	71	2	2	23	1.10
1731749--1731782	15	2.3	15	90	5	52	50	0	0	50	1.00
1732574--1732622	18	2.8	17	77	20	55	34	0	0	65	0.93
1732570--1732624	19	2.8	20	81	13	69	36	0	0	63	0.95
1733427--1733467	17	2.2	17	87	12	55	65	0	0	34	0.93
1733504--1733563	11	5.2	11	74	9	57	41	1	1	55	1.20
1734188--1734220	15	2.1	17	88	11	52	39	0	9	51	1.34
1734229--1734254	13	2.0	13	100	0	52	84	0	0	15	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1735262--1735289	2	14.0	2	100	0	56	0	0	50	50	1.00
1742351--1742409	26	2.3	26	93	0	100	16	8	6	67	1.38
1742351--1742416	26	2.5	26	90	2	87	19	9	6	65	1.42
1767238--1767344	50	2.1	50	91	0	169	25	12	17	44	1.83
1790831--1790858	2	14.0	2	100	0	56	50	0	0	50	1.00
1793592--1793651	30	2.0	31	83	9	79	50	3	1	45	1.28
1796600--1796630	2	15.5	2	100	0	62	51	0	0	48	1.00
1796759--1796795	2	18.5	2	100	0	74	0	48	0	51	1.00
1796795--1796823	2	14.5	2	100	0	58	48	0	0	51	1.00
1801907--1801961	27	2.0	28	85	3	76	49	1	1	47	1.23
1802106--1802139	16	2.1	16	88	0	50	50	0	5	44	1.26
1802387--1802433	24	2.0	24	86	0	67	40	2	4	53	1.32
1803065--1803138	36	2.0	37	92	7	123	40	16	17	25	1.90
1803834--1803862	14	2.0	15	93	6	51	41	0	3	55	1.17
1804830--1805371	60	9.2	60	78	10	453	35	8	6	50	1.58
1804830--1805380	120	4.7	118	80	6	528	35	8	6	50	1.58
1808491--1808523	16	2.1	16	94	0	57	72	6	0	21	1.05
1810080--1810294	114	1.9	108	86	5	304	36	6	4	52	1.48
1810254--1810297	17	2.5	17	81	7	52	47	4	0	47	1.22
1810285--1810346	24	2.4	27	79	17	69	51	0	0	48	1.00
1817987--1818035	2	24.5	2	87	0	71	48	0	2	48	1.12
1819068--1819106	21	1.9	21	94	5	71	33	23	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1820083--1820122	21	1.9	21	94	0	71	32	20	17	30	1.95
1821916--1821951	18	2.0	18	94	0	63	30	11	19	38	1.86
1821933--1822684	117	6.2	117	72	12	526	35	10	17	35	1.85
1821887--1823315	252	5.7	251	77	10	1141	36	10	16	37	1.83
1822418--1822454	18	2.1	18	94	0	65	21	8	27	43	1.80
1822684--1823046	117	3.1	113	77	3	375	37	10	13	38	1.79
1823034--1823068	18	1.9	18	100	0	70	28	11	20	40	1.87
1822916--1823315	135	3.0	134	83	2	471	36	9	15	39	1.80
1824767--1825311	103	5.0	103	75	13	459	37	8	17	35	1.81
1824882--1825329	117	4.0	114	77	7	470	37	9	16	36	1.82
1825452--1825654	103	2.0	103	90	0	316	36	10	19	33	1.86
1825554--1825803	135	1.9	135	86	0	365	34	11	17	36	1.86
1825672--1826023	117	3.1	114	81	12	447	35	12	18	34	1.88
1824976--1826144	355	3.3	354	90	3	1853	35	10	18	35	1.85
1825807--1826009	103	2.0	103	95	0	361	36	11	19	32	1.88
1826011--1826045	18	1.9	18	94	0	61	20	11	25	42	1.85
1827140--1827210	36	2.0	36	91	0	115	36	9	26	26	1.88
1831975--1832032	30	1.9	30	82	6	73	46	1	13	37	1.54
1832173--1832248	33	2.4	33	84	4	93	42	0	3	53	1.19
1836938--1836984	23	2.1	21	84	7	58	42	8	8	40	1.66
1842743--1842780	18	2.1	19	85	5	51	52	0	0	47	1.00
1843629--1843694	29	2.4	28	82	5	80	40	0	4	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1843801--1843846	21	2.3	20	82	13	60	45	2	0	52	1.13
1844604--1844651	22	2.2	22	85	7	62	22	0	2	75	0.91
1850695--1850735	16	2.6	16	88	7	57	14	2	2	80	0.92
1851687--1851856	88	1.9	88	84	2	225	37	5	9	47	1.60
1862627--1862667	13	3.0	13	80	13	55	41	0	0	58	0.98
1863088--1863136	13	3.6	14	76	18	50	42	6	2	48	1.39
1864202--1864240	18	2.1	19	95	4	71	30	0	0	69	0.89
1865566--1865658	29	3.2	28	73	19	86	47	1	4	47	1.29
1866975--1867033	29	2.0	30	83	9	77	44	0	0	55	0.99
1866986--1867041	23	2.5	22	77	16	62	39	0	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127