genome.fa.s656.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  54  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10690428--10690466	15	2.5	15	84	15	53	17	2	5	74	1.12
10691853--10691972	62	1.9	62	94	0	213	34	1	9	55	1.42
10694091--10694129	12	3.0	12	82	17	51	41	0	0	58	0.98
10696078--10696193	58	2.0	58	96	0	214	35	12	21	30	1.91
10696773--10696817	3	15.0	3	100	0	90	33	0	0	66	0.92
10700297--10700334	13	2.9	14	84	11	53	7	2	10	78	1.04
10701683--10701824	57	2.5	58	82	4	173	14	19	33	32	1.92
10702395--10702430	16	2.2	17	90	5	56	22	13	8	55	1.65
10702767--10702792	3	8.7	3	100	0	52	69	0	0	30	0.89
10706594--10706651	25	2.2	26	85	11	75	39	6	3	50	1.46
10706595--10706646	24	2.1	24	82	13	61	40	7	3	48	1.50
10708612--10708740	52	2.5	52	91	5	199	27	20	8	44	1.80
10709648--10709804	52	3.0	52	84	0	188	28	22	6	42	1.78
10709943--10709977	3	11.7	3	100	0	70	34	0	0	65	0.93
10710424--10710453	3	10.0	3	100	0	60	66	0	0	33	0.92
10710796--10710859	20	3.0	21	65	13	58	34	0	7	57	1.27
10710777--10710859	43	1.9	43	97	0	157	33	0	10	55	1.35
10711462--10711486	2	12.5	2	100	0	50	52	0	0	48	1.00
10711403--10711569	83	2.0	83	100	0	334	43	8	14	33	1.75
10711545--10711574	2	15.0	2	100	0	60	50	0	0	50	1.00
10711831--10711867	13	2.8	13	87	4	56	64	2	5	27	1.28
10712289--10712315	6	4.5	6	100	0	54	0	48	14	37	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10716477--10716501	4	6.2	4	100	0	50	24	0	24	52	1.48
10719864--10719915	15	3.6	15	84	10	81	38	1	0	59	1.08
10719859--10719915	28	2.0	28	100	0	114	40	3	0	56	1.17
10727579--10727636	26	2.1	27	84	6	73	37	25	10	25	1.88
10737314--10737376	14	4.2	14	71	13	54	26	1	1	69	1.06
10737519--10737583	21	3.3	20	77	10	64	9	12	1	76	1.07
10738953--10739010	28	2.0	28	83	6	71	41	0	5	53	1.23
10745707--10745735	8	3.6	8	100	0	58	24	24	13	37	1.91
10753054--10753114	22	2.8	21	69	18	52	27	4	0	67	1.11
10753456--10753494	19	2.1	19	85	9	53	10	17	15	56	1.66
10756744--10756778	2	17.5	2	100	0	70	51	0	48	0	1.00
10757673--10757725	25	2.1	26	82	6	65	62	0	0	37	0.96
10757702--10757743	18	2.2	19	87	8	59	50	0	0	50	1.00
10757862--10757890	3	9.7	3	100	0	58	34	0	0	65	0.93
10758483--10758510	13	2.2	13	100	0	56	42	0	0	57	0.99
10758817--10758868	21	2.5	22	90	6	81	53	0	0	46	1.00
10758854--10758894	8	5.2	8	85	2	57	58	0	0	41	0.98
10758852--10758900	18	2.9	18	82	14	52	55	0	0	44	0.99
10760175--10760212	18	2.1	18	90	5	58	52	0	2	44	1.14
10760802--10760832	15	2.1	15	93	0	53	19	16	16	48	1.81
10760835--10760868	2	17.0	2	100	0	68	50	0	0	50	1.00
10761962--10762001	21	1.9	21	84	0	53	47	10	27	15	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10762534--10762563	2	15.0	2	100	0	60	50	0	0	50	1.00
10765802--10765830	13	2.1	14	93	6	51	41	0	0	58	0.98
10775153--10775192	15	2.7	15	88	3	55	0	10	7	82	0.84
10775159--10775198	21	1.9	21	85	10	55	0	7	10	82	0.84
10777398--10777448	18	2.9	18	75	16	54	62	1	5	29	1.29
10777431--10777471	14	3.0	14	89	7	66	70	0	4	24	1.06
10777425--10777536	21	5.6	21	67	23	64	69	0	3	25	1.10
10777389--10777540	66	2.3	65	80	13	170	69	1	3	25	1.13
10777389--10777537	31	4.5	33	74	13	119	69	1	4	24	1.13
10777436--10777543	6	16.3	6	71	19	56	72	0	2	24	1.04
10777861--10778046	80	2.3	80	78	9	202	45	18	12	23	1.84
10777803--10778052	41	6.1	41	76	6	186	42	21	12	24	1.87
10778286--10778423	43	3.1	43	75	13	138	34	15	13	36	1.87
10779833--10779873	18	2.2	19	91	4	66	7	17	0	75	1.02
10779820--10779902	29	2.7	31	76	16	100	9	22	0	67	1.20
10779870--10779914	22	2.0	23	87	8	67	13	26	0	60	1.34
10788266--10788307	17	2.4	17	88	4	57	54	4	0	40	1.21
10788492--10788521	15	2.0	15	93	0	51	50	3	0	46	1.18
10788441--10788684	129	1.9	130	83	5	316	43	4	3	48	1.41
10792259--10792289	10	3.1	10	95	0	53	64	0	3	32	1.09
10795060--10795110	21	2.7	19	75	16	52	41	5	5	47	1.52
10795473--10795505	17	1.9	17	93	0	57	21	0	3	75	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10796018--10796082	34	1.9	34	84	9	89	30	3	6	60	1.37
10797611--10797636	6	4.3	6	100	0	52	34	19	15	30	1.93
10797898--10797952	28	2.0	27	82	10	67	30	10	10	47	1.73
10798380--10798418	19	2.1	19	85	9	53	82	0	15	2	0.79
10801137--10801162	2	13.0	2	100	0	52	50	0	0	50	1.00
10801925--10801983	29	2.0	29	90	0	91	0	32	13	54	1.40
10803389--10803545	56	3.0	51	78	15	185	30	9	12	47	1.72
10804433--10804461	1	29.0	1	100	0	58	100	0	0	0	0.00
10811762--10811808	13	3.5	13	88	2	58	27	2	6	63	1.30
10811773--10811810	14	2.6	15	79	8	51	28	0	5	65	1.14
10813019--10813801	162	4.8	162	77	7	627	33	10	13	41	1.79
10813348--10813671	171	1.9	170	81	3	391	34	11	11	42	1.77
10816013--10816051	13	3.0	13	80	0	51	41	0	0	58	0.98
10817000--10817048	20	2.3	22	75	10	57	53	8	6	32	1.55
10817007--10817046	21	2.0	21	85	5	55	45	10	7	37	1.66
10817919--10817955	18	2.1	18	90	10	58	51	2	5	40	1.39
10817952--10818009	31	1.9	30	82	10	73	55	1	1	41	1.20
10819840--10819864	13	1.9	13	100	0	50	88	0	0	12	0.53
10821533--10821565	14	2.4	14	90	10	50	57	6	0	36	1.23
10822258--10822296	20	1.9	20	84	5	51	51	10	10	28	1.68
10822532--10822747	60	3.6	59	77	10	147	28	13	11	46	1.78
10822591--10822737	59	2.5	58	83	4	159	23	14	13	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10822885--10823001	60	1.9	61	81	5	139	31	9	11	47	1.72
10825696--10826083	193	2.0	194	96	1	715	36	14	12	36	1.84
10833231--10833255	12	2.1	12	100	0	50	76	8	0	16	1.02
10833790--10833842	23	2.3	23	81	15	65	47	3	0	49	1.19
10834119--10834179	3	20.3	3	100	0	122	34	0	0	65	0.93
10834640--10834693	21	2.5	22	75	3	56	22	0	7	70	1.12
10835120--10835171	23	2.3	22	90	3	86	32	13	0	53	1.40
10837048--10837081	18	2.0	17	88	11	52	29	0	11	58	1.33
10837946--10837979	2	17.0	2	93	0	50	44	0	5	50	1.26
10837932--10837974	16	2.7	16	92	0	68	39	0	11	48	1.40
10837932--10837976	18	2.5	18	92	0	72	40	0	11	48	1.39
10840033--10840062	10	2.9	10	95	5	51	23	0	0	76	0.78
10840055--10840192	23	6.0	23	73	16	101	38	2	0	58	1.13
10840048--10840185	49	3.0	48	81	13	159	36	2	0	61	1.08
10846010--10846051	3	14.7	3	80	9	52	66	4	0	28	1.12
10847168--10847435	40	6.7	39	81	10	285	45	18	10	26	1.81
10847136--10847435	79	3.8	77	81	9	320	44	18	10	26	1.81
10847137--10847501	159	2.3	159	85	5	481	45	18	9	26	1.80
10847136--10847501	119	3.1	119	79	11	392	45	18	9	26	1.80
10847136--10847501	40	9.2	40	76	13	251	45	18	9	26	1.80
10847477--10847521	20	2.2	20	88	0	63	53	20	2	24	1.57
10847497--10847636	73	1.9	73	89	0	217	43	19	10	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10847742--10847895	39	3.9	40	78	4	152	40	16	14	27	1.88
10859401--10859441	3	13.7	3	94	0	73	34	0	2	63	1.08
10859933--10859973	11	3.9	11	90	6	59	24	0	2	73	0.96
10860405--10860449	11	4.2	11	83	13	58	71	8	0	20	1.12
10862239--10862322	40	2.1	40	100	0	168	40	7	7	45	1.59
10865187--10865229	2	21.5	2	85	0	59	44	2	0	53	1.13
10867666--10867714	22	2.2	23	85	7	66	53	2	4	40	1.32
10870136--10870195	18	3.6	18	70	21	67	55	1	1	41	1.20
10871843--10871896	27	2.0	27	96	0	99	37	22	12	27	1.91
10873934--10874004	26	2.9	26	74	19	73	54	1	0	43	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127