genome.fa.s656.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  59  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11562372--11562592	110	2.0	111	90	3	347	24	14	9	51	1.72
11565219--11565683	232	2.0	232	97	0	885	36	14	10	38	1.81
11568577--11568627	19	2.7	19	100	0	102	37	11	9	41	1.75
11570789--11570823	14	2.6	13	86	8	52	45	0	2	51	1.16
11571803--11571951	81	1.8	81	86	0	217	38	9	10	42	1.71
11577481--11577519	3	13.0	3	100	0	78	33	0	0	66	0.92
11578550--11578605	21	2.7	23	86	10	68	48	0	0	51	1.00
11578559--11578605	21	2.2	22	92	7	80	48	0	0	51	1.00
11578756--11578791	18	2.0	18	88	0	54	75	0	13	11	1.06
11589947--11589994	22	2.2	22	96	3	89	47	0	0	52	1.00
11599154--11599224	25	2.8	25	93	0	124	29	1	2	66	1.15
11604965--11605118	11	15.2	10	66	17	68	37	4	7	50	1.50
11605036--11605118	42	2.0	43	85	2	114	39	3	6	50	1.44
11605008--11605118	21	5.3	21	77	3	91	37	5	6	50	1.51
11605348--11605384	19	1.9	19	100	0	74	29	10	5	54	1.57
11605456--11605563	44	2.5	44	73	0	108	37	8	7	47	1.62
11605482--11605735	22	11.5	22	73	5	145	38	9	7	44	1.65
11605459--11605578	44	2.7	44	71	2	107	38	7	6	47	1.58
11605736--11605831	44	2.2	44	84	3	122	42	8	4	44	1.53
11605945--11606236	22	13.2	22	66	10	105	38	8	5	48	1.56
11605736--11606236	22	22.8	21	65	12	98	37	9	5	48	1.58
11606775--11606864	22	4.1	22	74	8	85	40	7	2	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11606682--11606864	44	4.3	43	69	12	117	39	7	3	50	1.46
11606893--11607021	22	5.9	22	72	8	68	38	5	4	51	1.46
11606981--11607031	22	2.4	21	86	3	66	37	3	3	54	1.37
11607044--11607097	22	2.5	22	81	0	63	37	12	5	44	1.66
11607203--11607234	3	10.7	3	100	0	64	68	0	0	31	0.90
11609929--11609957	2	14.5	2	100	0	58	48	0	0	51	1.00
11614832--11614869	7	5.4	7	93	0	67	26	0	13	60	1.33
11617719--11617786	30	2.2	32	80	15	81	42	2	2	51	1.32
11617741--11617803	31	2.1	31	85	8	87	46	1	1	50	1.20
11624179--11624212	2	17.0	2	87	0	50	44	0	2	52	1.16
11624253--11624322	24	3.0	23	79	10	61	52	1	1	44	1.18
11628869--11628933	21	3.1	21	84	6	80	38	1	7	52	1.40
11628963--11629008	21	2.2	21	84	7	58	34	0	8	56	1.30
11629256--11629332	22	3.5	22	80	1	73	40	7	3	48	1.51
11629346--11629491	22	6.6	22	72	6	98	41	6	4	47	1.49
11629299--11629446	66	2.2	66	80	0	152	42	6	6	44	1.55
11629365--11629495	44	3.0	45	77	5	124	40	6	5	47	1.53
11629558--11629622	22	3.0	22	72	17	62	32	10	9	47	1.70
11630763--11630812	27	1.9	26	88	8	75	30	2	10	58	1.42
11631797--11631859	20	3.2	19	71	13	56	30	0	3	66	1.07
11633039--11633098	31	1.9	32	82	3	77	35	1	6	56	1.35
11633571--11633666	30	3.2	30	84	7	108	46	3	8	41	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11634444--11634491	23	2.0	24	92	4	80	45	0	0	54	0.99
11637311--11637348	7	5.4	7	93	0	67	26	0	13	60	1.33
11640214--11640277	31	2.1	31	85	5	87	46	1	1	50	1.20
11646633--11646667	2	18.0	2	88	5	54	45	0	2	51	1.16
11651251--11651365	21	5.5	21	73	12	85	38	6	10	44	1.66
11651316--11651381	21	3.1	21	84	4	80	37	1	7	53	1.39
11651408--11651447	20	2.0	21	85	14	57	32	0	10	57	1.32
11651701--11651748	22	2.1	23	84	3	62	35	6	6	52	1.52
11651801--11651944	22	6.6	21	71	9	83	41	4	5	48	1.45
11651810--11651939	44	2.9	45	77	5	113	40	4	6	48	1.49
11651914--11651979	30	2.2	29	84	5	87	48	9	0	42	1.35
11651932--11651977	22	2.1	21	84	15	58	45	10	0	43	1.39
11651946--11652014	22	3.1	22	81	8	86	43	11	4	40	1.61
11652724--11652809	37	2.2	41	78	16	101	37	2	3	56	1.29
11652911--11652948	16	2.3	17	86	4	51	21	0	7	71	1.11
11652926--11652966	19	2.2	19	86	8	57	19	0	9	70	1.14
11653199--11653248	27	1.9	26	88	8	75	30	2	10	58	1.42
11653235--11653271	18	2.0	19	89	5	58	48	0	2	48	1.15
11654215--11654276	20	3.2	19	71	17	56	30	0	3	66	1.08
11655981--11656076	30	3.2	30	84	7	108	46	3	8	41	1.49
11663601--11663767	89	1.9	90	85	10	236	30	23	14	31	1.95
11669583--11669670	44	2.0	44	88	4	133	34	9	17	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11669763--11669807	21	2.1	21	84	8	56	42	0	0	57	0.98
11669762--11669807	22	2.1	21	84	11	58	41	0	0	58	0.98
11669833--11669871	17	2.2	17	86	4	51	69	2	0	28	1.02
11673588--11673615	2	14.0	2	100	0	56	50	0	0	50	1.00
11680419--11680480	16	3.5	17	82	10	72	67	4	0	27	1.10
11680422--11680478	9	6.6	9	78	15	50	68	5	0	26	1.11
11686776--11686832	2	28.5	2	92	0	78	45	0	7	47	1.30
11688070--11688148	41	1.9	41	82	10	99	39	2	1	56	1.21
11688075--11688158	41	2.1	40	80	8	91	41	2	2	53	1.27
11689179--11689250	19	3.5	22	75	21	66	44	4	0	51	1.20
11690168--11690234	35	1.9	34	87	3	98	41	1	2	53	1.25
11690193--11690245	25	2.1	26	82	3	63	39	3	1	54	1.29
11690838--11690898	26	2.3	26	85	0	86	32	26	8	32	1.86
11692566--11692610	20	2.2	20	84	4	54	35	24	8	31	1.86
11694987--11695069	18	4.6	18	80	7	87	68	2	2	26	1.14
11695007--11695057	9	5.8	9	82	11	61	74	0	1	23	0.92
11694997--11695075	9	8.3	10	75	22	57	69	2	2	25	1.13
11695317--11695357	18	2.3	18	87	4	57	68	2	7	21	1.26
11695503--11695554	27	2.0	27	88	7	81	32	3	7	55	1.46
11695665--11695702	17	2.2	17	90	0	58	26	0	10	63	1.27
11695681--11695732	26	2.0	27	85	11	72	25	1	1	71	1.07
11695681--11695739	26	2.3	26	79	5	66	23	3	1	71	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11695802--11695826	13	1.9	13	100	0	50	32	0	4	64	1.12
11695886--11695959	31	2.5	31	86	8	100	29	1	4	64	1.20
11699088--11699126	12	3.2	12	85	0	51	58	15	0	25	1.37
11704541--11704587	17	2.8	17	83	3	51	27	8	2	61	1.36
11704560--11704725	59	2.8	58	82	7	201	34	7	4	53	1.49
11704560--11704725	58	2.8	59	85	5	221	34	7	4	53	1.49
11706398--11706462	17	3.9	17	78	8	62	43	4	15	36	1.67
11706398--11706495	33	2.9	33	80	8	101	45	5	17	31	1.70
11706405--11706504	17	5.9	17	74	6	69	46	6	16	32	1.71
11706437--11706502	34	1.9	34	84	6	89	48	4	18	28	1.67
11706482--11706581	52	1.9	52	81	0	119	45	8	15	32	1.75
11706746--11706813	34	2.0	33	83	8	84	44	8	20	26	1.81
11706771--11706815	16	2.8	16	89	0	63	44	8	20	26	1.80
11706755--11706832	16	4.6	17	72	13	54	41	10	23	25	1.86
11706860--11707028	46	3.8	43	75	14	130	39	13	8	39	1.74
11707349--11707389	13	3.3	13	73	13	50	39	21	19	19	1.93
11708230--11708301	8	9.0	8	77	10	67	11	16	2	69	1.29
11708230--11708301	17	4.5	16	74	10	67	11	16	2	69	1.29
11711637--11711662	4	6.5	4	100	0	52	76	0	0	23	0.78
11712240--11712294	24	2.2	24	84	15	69	41	1	7	49	1.41
11712194--11712381	79	2.4	78	83	8	236	36	9	6	47	1.61
11712401--11712527	60	2.2	59	87	5	177	33	5	4	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11712499--11712523	13	1.9	13	100	0	50	32	0	4	64	1.12
11715349--11715381	3	11.3	3	93	6	59	63	0	0	36	0.95
11723534--11723563	13	2.4	13	94	5	53	36	6	0	56	1.26
11730886--11730910	3	8.3	3	100	0	50	68	0	32	0	0.90
11734587--11734833	121	2.0	125	90	3	394	32	18	23	25	1.97
11739396--11739450	29	1.9	29	85	3	76	32	3	0	63	1.12
11739415--11739470	24	2.4	24	79	8	62	30	7	1	60	1.33
11739849--11739888	20	2.1	19	86	13	55	45	0	7	47	1.31
11740565--11740619	21	2.6	21	76	0	56	14	3	9	72	1.23
11746714--11746864	10	14.5	10	70	12	83	57	7	0	33	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127