genome.fa.s656.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  65  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12650450--12650734	22	12.8	22	69	16	81	34	7	5	51	1.55
12650494--12650757	22	11.9	22	74	12	175	34	7	6	51	1.57
12651032--12651162	22	5.9	22	80	0	100	41	9	6	41	1.63
12651325--12651363	19	2.1	19	95	0	69	38	15	2	43	1.60
12651500--12651564	22	3.0	22	73	13	62	36	6	9	47	1.60
12651558--12651635	22	3.6	21	72	8	59	33	7	8	50	1.63
12651680--12651747	22	3.0	22	67	6	55	41	10	4	44	1.58
12651680--12651770	44	2.0	46	83	10	116	37	9	4	48	1.57
12651695--12651778	22	3.8	22	70	6	80	34	8	5	51	1.57
12651863--12651932	22	3.2	21	76	8	52	37	8	1	52	1.41
12653536--12653597	32	2.0	31	93	3	106	22	4	6	66	1.35
12655504--12655557	26	2.0	27	85	3	74	46	7	7	38	1.60
12655805--12655852	15	3.5	15	68	26	52	60	0	0	39	0.97
12655809--12655871	25	2.4	26	89	5	92	57	1	1	39	1.18
12672476--12672529	15	3.6	15	80	7	65	57	0	1	40	1.09
12673487--12673544	29	2.0	30	93	3	100	43	10	10	36	1.73
12676582--12676625	23	1.9	23	100	0	88	40	9	11	38	1.73
12679691--12679725	14	2.5	14	90	0	52	37	17	0	45	1.48
12679761--12679810	18	2.8	17	80	14	55	78	14	2	6	1.03
12680040--12680127	27	3.4	25	73	21	60	62	3	0	34	1.12
12681012--12681063	15	3.2	16	81	5	61	53	0	0	46	1.00
12681105--12681133	14	2.1	14	100	0	58	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12689043--12689081	20	2.0	20	89	0	60	43	5	10	41	1.61
12699588--12699616	14	2.1	14	100	0	58	6	34	6	51	1.55
12701253--12701282	9	3.3	9	90	0	51	50	0	0	50	1.00
12701432--12701464	17	1.9	17	88	11	50	21	0	18	60	1.36
12707122--12707198	38	2.0	38	89	0	118	31	27	9	32	1.88
12707811--12707845	16	2.2	16	89	0	52	45	11	11	31	1.76
12712717--12712754	19	2.0	19	85	10	51	55	7	2	34	1.43
12716532--12716589	26	2.2	26	78	6	64	53	0	6	39	1.28
12716627--12716663	19	1.9	19	88	0	56	27	2	2	67	1.17
12717649--12717707	31	1.9	31	89	6	93	47	1	0	50	1.11
12717634--12717731	22	4.5	22	70	8	76	46	1	1	51	1.14
12717933--12717982	25	2.0	25	96	0	91	52	2	12	34	1.50
12721185--12721236	27	1.9	27	88	7	79	13	3	5	76	1.10
12722513--12722554	13	3.2	13	78	21	52	57	7	7	28	1.52
12727899--12727950	22	2.5	22	87	6	72	48	5	11	34	1.63
12727977--12728076	22	4.5	22	73	9	60	52	7	6	35	1.53
12728218--12728265	22	2.2	22	88	7	71	54	2	8	35	1.42
12728232--12728265	11	3.1	11	82	0	50	50	0	11	38	1.39
12728226--12728293	22	3.2	21	77	8	66	50	1	13	35	1.51
12728247--12728324	37	2.1	37	92	0	129	44	1	16	37	1.56
12728332--12728456	22	5.8	22	74	10	78	49	4	8	36	1.55
12728748--12728856	44	2.5	44	80	5	114	48	6	9	35	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12728761--12728852	22	4.2	22	75	5	87	46	4	10	38	1.59
12728896--12729008	22	5.2	22	73	6	95	47	3	10	38	1.55
12728906--12729046	65	2.2	66	80	1	158	46	5	9	38	1.59
12728908--12729064	22	7.2	21	71	5	73	46	5	8	38	1.59
12729122--12729193	21	3.4	20	74	11	72	59	4	9	26	1.47
12729103--12729217	43	2.7	41	74	6	104	51	3	11	33	1.55
12729199--12729281	22	3.8	21	68	7	58	44	4	12	38	1.63
12729339--12729409	22	3.2	22	77	15	83	47	11	1	39	1.48
12729432--12729522	22	4.2	21	75	9	76	43	8	7	39	1.64
12729419--12729541	22	5.7	21	72	10	72	43	10	7	39	1.67
12729832--12729879	22	2.2	22	84	0	60	56	12	2	29	1.48
12729901--12729960	21	2.9	20	79	13	68	50	5	8	36	1.55
12729857--12730415	22	25.2	22	68	12	160	46	5	10	38	1.60
12730330--12730387	11	5.3	11	71	8	55	44	1	10	43	1.48
12730767--12730815	21	2.3	22	85	3	64	48	6	8	36	1.58
12732256--12732647	63	6.2	64	80	6	363	44	8	11	35	1.71
12732256--12732676	126	3.4	125	77	2	439	44	8	11	36	1.70
12732322--12732675	188	1.9	189	88	1	532	43	8	11	35	1.72
12740395--12740423	2	14.5	2	100	0	58	48	0	0	51	1.00
12740741--12740813	38	1.9	38	94	2	130	50	4	5	39	1.44
12741738--12741806	30	2.3	29	83	14	79	47	1	1	49	1.19
12741813--12741870	29	2.0	29	83	6	73	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12742493--12742543	23	2.2	23	85	3	66	60	5	0	33	1.21
12761214--12761274	21	2.9	22	81	16	67	57	0	3	39	1.15
12761214--12761274	20	2.9	21	81	16	65	57	0	3	39	1.15
12761228--12761274	22	2.2	20	85	7	58	59	0	2	38	1.09
12762716--12762759	2	22.0	2	100	0	88	50	0	0	50	1.00
12762777--12762833	24	2.6	21	72	20	53	63	1	1	33	1.15
12764136--12764165	15	1.9	16	93	6	53	76	0	3	20	0.92
12765472--12765513	21	2.0	21	85	4	57	78	4	9	7	1.08
12770294--12770318	2	12.5	2	100	0	50	52	0	0	48	1.00
12770640--12770684	2	22.5	2	100	0	90	51	0	48	0	1.00
12771401--12771442	21	2.0	21	100	0	84	42	19	14	23	1.87
12773769--12773824	25	2.3	26	87	9	82	53	8	3	33	1.49
12779626--12779664	20	2.0	20	89	0	60	53	5	10	30	1.56
12779637--12779704	32	2.1	33	86	2	93	47	7	8	36	1.63
12779669--12779713	21	2.2	20	84	4	54	48	6	6	37	1.56
12779905--12779944	18	2.2	18	86	4	53	37	2	7	52	1.43
12782154--12782251	48	2.0	48	90	3	153	55	16	5	23	1.61
12782425--12782500	9	8.8	9	77	8	86	31	25	2	40	1.69
12782425--12782501	6	12.8	6	80	0	82	31	25	2	40	1.69
12787481--12787585	54	2.0	53	81	5	122	30	8	16	44	1.77
12797677--12797718	11	3.8	11	81	9	50	73	0	23	2	0.94
12802941--12803002	30	2.1	30	100	0	124	32	11	32	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12802962--12803180	108	2.0	107	94	0	384	41	11	25	21	1.87
12803475--12803505	2	15.5	2	100	0	62	48	0	0	51	1.00
12806498--12806534	17	2.2	17	100	0	74	40	5	21	32	1.76
12815458--12815534	22	3.5	22	98	0	145	36	23	18	22	1.95
12815726--12815755	9	3.2	9	95	4	51	63	0	0	36	0.95
12815728--12815757	10	3.1	10	95	4	53	63	0	0	36	0.95
12821733--12821943	102	2.0	103	90	3	334	27	16	14	41	1.87
12824701--12824814	44	2.6	44	81	2	122	56	12	8	22	1.63
12825497--12825574	26	3.4	24	78	16	67	60	15	5	19	1.53
12825679--12825725	21	2.2	22	84	3	60	80	8	0	10	0.89
12826124--12826173	18	2.8	18	82	8	50	56	28	0	16	1.41
12827264--12827295	3	10.7	3	100	0	64	68	0	0	31	0.90
12827694--12827721	3	9.3	3	100	0	56	67	0	0	32	0.91
12830187--12830626	239	1.8	239	94	0	781	24	29	13	32	1.93
12847152--12847181	14	2.1	14	93	0	51	56	3	40	0	1.16
12848047--12848094	3	15.7	3	95	4	87	31	0	2	66	1.03
12849985--12850018	16	2.2	15	89	5	50	73	0	26	0	0.83
12852271--12852318	21	2.2	23	85	7	64	39	0	0	60	0.97
12852487--12852542	24	2.3	24	87	6	78	48	0	0	51	1.00
12853017--12853069	17	3.1	16	76	15	52	26	1	1	69	1.09
12853311--12853356	20	2.5	17	86	10	56	2	10	6	80	0.98
12853758--12853787	9	3.2	9	90	9	51	10	13	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12854574--12854620	25	2.0	24	83	8	60	53	4	0	42	1.20
12855580--12855604	11	2.3	11	100	0	50	0	16	68	16	1.22
12855747--12855799	22	2.5	22	93	3	90	49	0	0	50	1.00
12856407--12856444	2	19.0	2	88	0	58	55	0	0	44	0.99
12861273--12861369	39	2.5	40	79	12	105	46	1	1	51	1.14
12861395--12861471	21	3.7	21	80	3	75	38	2	10	48	1.51
12861495--12861534	21	1.9	21	85	10	55	35	5	7	52	1.51
12861783--12861958	22	8.0	22	75	5	124	36	9	9	44	1.69
12861934--12862054	22	5.7	21	72	17	72	40	7	8	43	1.63
12861933--12862025	33	2.8	33	78	3	98	38	7	8	45	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127