genome.fa.s656.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  36  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7371170--7371242	26	2.6	29	74	14	71	50	0	2	46	1.15
7382272--7382338	34	2.0	34	85	5	91	31	16	13	38	1.87
7384933--7384995	21	3.0	21	71	13	58	15	0	39	44	1.47
7389725--7389795	18	4.0	18	72	13	58	7	14	4	74	1.18
7390994--7391146	76	2.0	77	90	2	245	45	12	9	32	1.73
7391594--7391639	17	2.8	16	83	3	56	63	0	0	36	0.95
7394871--7394923	27	2.0	27	88	0	79	24	20	3	50	1.64
7395051--7395088	15	2.5	15	84	12	51	36	0	2	60	1.11
7399901--7399937	2	18.5	2	100	0	74	51	0	0	48	1.00
7401356--7401397	19	2.2	20	91	4	68	50	0	2	47	1.14
7403341--7403379	17	2.2	17	86	4	51	56	23	7	12	1.62
7403347--7403380	17	2.0	17	94	0	59	50	29	5	14	1.67
7411954--7412122	50	3.4	50	82	9	168	17	10	29	42	1.82
7415424--7415490	32	2.0	35	83	13	88	29	4	5	59	1.41
7415479--7415503	13	1.9	13	100	0	50	40	0	4	56	1.18
7415832--7415861	16	1.9	15	93	6	51	63	3	0	33	1.11
7424317--7424358	16	2.8	16	89	7	61	54	0	0	45	0.99
7424322--7424358	8	4.6	8	86	0	56	56	0	0	43	0.99
7424319--7424368	14	3.4	14	81	10	55	58	2	0	40	1.10
7424957--7425019	27	2.3	27	77	20	69	55	3	1	39	1.25
7425534--7425588	23	2.4	22	82	8	65	41	1	0	56	1.10
7426602--7426630	2	15.0	2	92	7	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7426929--7426971	18	2.3	19	80	4	52	60	6	4	27	1.43
7429324--7429367	22	2.0	22	86	4	61	36	2	4	56	1.32
7429859--7429897	20	2.0	20	85	10	53	46	15	0	38	1.46
7435911--7435992	30	2.7	30	86	3	121	36	7	29	26	1.83
7437501--7437525	2	12.5	2	100	0	50	52	0	0	48	1.00
7443074--7443113	16	2.4	16	95	4	71	20	0	5	75	0.99
7443133--7443185	18	3.1	17	84	10	63	28	3	1	66	1.20
7445675--7445870	63	3.1	62	80	10	227	48	8	5	38	1.55
7447113--7447158	24	2.0	24	83	12	60	56	8	6	28	1.54
7450487--7450682	63	3.1	62	80	10	227	47	8	5	38	1.57
7450439--7450858	217	2.0	217	81	7	504	47	10	5	37	1.60
7461410--7461453	16	2.8	15	80	10	52	38	0	2	59	1.10
7461619--7461715	45	2.2	45	80	0	104	46	5	10	38	1.60
7461841--7461870	14	2.1	15	93	6	53	43	0	10	46	1.37
7461946--7462000	18	3.2	18	74	10	60	52	0	5	41	1.24
7466545--7466633	42	2.1	43	91	2	144	23	5	17	52	1.66
7468113--7468160	3	16.3	3	89	4	71	66	2	29	2	1.14
7468102--7468160	29	2.0	29	93	6	102	66	3	25	5	1.28
7468114--7468166	26	2.1	25	92	3	88	62	3	30	3	1.30
7474465--7474494	2	15.0	2	92	0	51	46	0	3	50	1.18
7475453--7475651	98	2.0	99	98	0	382	39	16	9	35	1.80
7475927--7475970	10	4.7	10	81	18	51	70	0	0	29	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7475927--7475970	20	2.3	20	88	11	67	70	0	0	29	0.88
7476000--7476051	11	4.4	11	74	25	52	48	7	0	44	1.31
7476007--7476045	13	3.0	13	78	14	53	46	7	0	46	1.31
7475992--7476072	37	2.2	36	78	8	92	49	6	0	44	1.27
7481501--7481534	15	2.3	15	90	10	52	14	23	0	61	1.33
7481631--7481656	3	8.7	3	100	0	52	69	0	0	30	0.89
7484123--7484209	23	3.9	22	77	16	90	28	2	3	65	1.21
7484126--7484212	22	3.9	22	74	18	81	28	2	3	65	1.21
7484354--7484397	24	1.9	23	86	9	63	56	0	4	38	1.20
7485923--7485991	29	2.3	31	85	5	88	52	1	0	46	1.09
7486070--7486124	29	1.9	28	88	3	83	49	1	1	47	1.23
7488158--7488192	16	2.2	16	89	0	52	37	0	0	62	0.95
7489364--7489404	20	2.0	20	86	9	57	60	0	0	39	0.96
7490389--7490475	39	2.2	39	91	4	140	49	11	6	32	1.65
7490389--7490481	19	4.8	20	81	18	117	50	10	6	32	1.63
7490457--7490551	39	2.5	38	79	20	117	50	12	5	31	1.62
7490457--7490552	37	2.5	37	81	18	117	50	12	5	32	1.62
7490513--7490591	23	3.5	22	73	20	67	54	11	2	31	1.49
7490565--7490633	25	2.8	24	81	12	70	52	11	4	31	1.57
7491597--7491634	15	2.6	15	87	4	60	13	5	26	55	1.59
7491766--7491810	18	2.5	19	85	7	58	11	6	2	80	0.99
7492547--7492661	10	11.7	10	67	13	60	58	6	2	33	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7492547--7492607	29	2.1	29	84	6	79	60	3	3	32	1.29
7492622--7492661	11	3.7	11	83	16	57	57	5	2	35	1.34
7492670--7492738	35	2.0	34	88	2	102	57	7	0	34	1.26
7492673--7492742	19	3.9	18	74	12	63	60	7	0	32	1.24
7493195--7493329	9	14.3	9	66	14	67	40	0	1	57	1.13
7493269--7493327	21	2.8	19	80	14	64	44	0	1	54	1.10
7493310--7493365	18	3.2	18	75	12	53	41	0	7	51	1.29
7493404--7493472	21	3.2	21	89	2	102	52	1	2	43	1.25
7493427--7493484	10	5.7	10	79	4	62	48	0	3	48	1.18
7493404--7493484	21	3.8	21	88	4	101	49	1	3	45	1.27
7493435--7493517	30	2.7	31	80	10	89	39	2	6	51	1.39
7493428--7493505	10	7.9	9	70	23	50	42	2	3	51	1.34
7494287--7494341	16	3.5	15	82	7	65	38	12	7	41	1.71
7502919--7502959	6	6.8	6	88	0	64	82	12	2	2	0.86
7504097--7504129	11	3.0	11	95	0	57	78	0	0	21	0.75
7507237--7507288	22	2.4	22	90	9	81	48	0	0	51	1.00
7507501--7507580	16	5.3	15	71	16	58	33	0	1	65	1.01
7509186--7509275	40	2.2	42	92	4	148	23	22	17	36	1.95
7518929--7518974	22	2.1	22	95	0	83	47	8	8	34	1.65
7521984--7522053	3	23.7	3	79	13	74	32	1	2	62	1.18
7521969--7522048	39	2.1	38	97	2	151	33	2	5	58	1.33
7522741--7522781	18	2.2	20	87	12	61	34	4	2	58	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7526338--7526434	44	2.2	44	92	1	160	46	5	22	25	1.72
7537544--7537574	14	2.2	14	94	0	53	51	0	3	45	1.17
7537760--7537911	23	6.5	23	74	14	116	57	0	1	40	1.12
7537787--7537839	11	4.5	11	81	11	61	64	0	0	35	0.94
7537751--7537876	35	3.5	36	78	6	130	58	0	1	39	1.07
7537808--7537970	10	15.5	11	65	23	68	54	0	1	43	1.12
7537751--7537928	91	1.9	95	83	11	235	57	0	1	40	1.10
7537801--7537966	21	8.0	19	70	19	95	55	0	1	42	1.12
7537765--7537966	53	3.4	59	77	16	188	56	0	0	41	1.09
7537782--7537966	65	2.9	61	80	14	214	56	0	1	42	1.10
7537836--7537967	57	2.3	55	82	10	165	54	0	1	43	1.15
7537855--7537973	59	2.0	58	87	7	170	54	0	0	44	1.05
7537865--7537977	29	4.3	23	74	23	100	55	0	0	43	1.05
7538007--7538112	18	6.0	16	72	18	61	46	0	1	50	1.18
7538038--7538089	16	3.2	16	78	10	61	48	0	0	51	1.00
7538007--7538089	32	2.4	35	79	16	93	48	1	0	50	1.08
7538970--7539021	26	2.0	26	100	0	104	46	11	3	38	1.59
7539454--7539554	35	2.9	34	77	8	96	49	1	0	47	1.19
7543602--7543645	20	2.3	19	92	4	70	29	0	2	68	1.02
7544125--7544150	13	2.0	13	100	0	52	53	0	0	46	1.00
7553624--7553892	87	3.1	87	96	0	484	39	21	6	33	1.79
7554037--7554107	34	2.2	33	85	10	92	33	9	11	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7557106--7557650	145	3.7	146	80	6	534	42	10	13	34	1.78
7557106--7557641	293	1.8	290	80	6	636	42	10	13	33	1.78
7558333--7558396	34	1.9	33	90	3	101	46	14	9	29	1.75
7559900--7559930	6	5.2	6	96	0	53	38	0	0	61	0.96
7564384--7564414	15	2.1	15	93	0	53	9	0	38	51	1.35
7564504--7564548	17	2.6	17	96	0	81	11	0	42	46	1.39
7564474--7564578	47	2.2	47	83	3	131	15	1	37	45	1.57
7564538--7564606	14	4.8	14	78	7	66	18	1	24	55	1.51
7564503--7564578	17	4.7	17	82	8	79	17	0	35	47	1.48
7564503--7564592	30	2.8	31	80	6	92	17	0	33	48	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127