genome.fa.s656.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  63  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12327554--12327589	11	3.2	11	88	7	54	77	5	0	16	0.94
12327739--12327782	16	2.7	15	80	13	52	34	0	0	65	0.93
12327736--12327797	25	2.6	23	80	10	72	38	0	0	61	0.96
12327846--12327879	16	2.1	16	88	5	50	47	0	0	52	1.00
12328092--12328167	30	2.5	31	79	14	88	47	1	1	50	1.18
12337633--12337704	25	3.0	24	83	4	90	31	8	19	40	1.81
12341791--12341847	24	2.4	24	76	5	62	61	0	0	38	0.96
12342278--12342312	16	2.2	17	90	10	56	28	0	28	42	1.56
12351129--12351289	71	2.3	71	82	7	177	41	10	7	40	1.68
12351691--12351730	20	2.0	20	85	0	53	57	0	0	42	0.98
12352805--12352835	16	1.9	16	93	0	53	29	0	3	67	1.06
12352805--12352847	14	2.9	15	86	6	52	27	0	2	69	1.00
12356729--12356784	7	8.0	7	83	0	67	62	1	0	35	1.06
12356729--12356784	14	4.0	14	97	0	103	62	1	0	35	1.06
12357954--12358002	23	2.1	23	88	0	71	28	10	30	30	1.90
12362095--12362521	213	2.0	213	99	0	836	27	16	20	35	1.94
12364460--12364497	19	2.0	19	100	0	76	36	21	15	26	1.93
12364746--12364778	16	2.1	16	100	0	66	30	12	24	33	1.91
12369856--12369899	22	2.0	22	90	0	70	43	11	13	31	1.80
12373935--12373978	22	2.0	22	95	0	79	43	13	11	31	1.80
12376030--12376071	22	2.0	21	90	4	66	78	0	16	4	0.91
12385146--12385184	20	2.0	20	85	10	53	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12386778--12386825	24	2.0	24	100	0	96	33	29	4	33	1.77
12389285--12389326	13	3.2	13	80	9	50	11	0	9	78	0.96
12389283--12389325	17	2.5	17	80	0	50	13	0	9	76	1.01
12389326--12389385	21	3.3	17	75	20	50	26	23	5	45	1.73
12390376--12390408	14	2.4	14	95	5	59	21	3	15	60	1.48
12394921--12394964	20	2.2	20	83	4	52	45	9	11	34	1.72
12395880--12395917	13	2.9	14	84	11	53	73	15	0	10	1.09
12395995--12396183	93	2.0	93	94	2	335	48	16	4	29	1.67
12397791--12397853	3	21.0	3	83	0	81	31	28	4	34	1.78
12402212--12402265	28	2.0	27	82	10	65	57	9	0	33	1.31
12402573--12402598	2	13.0	2	100	0	52	50	0	0	50	1.00
12402674--12402700	2	13.5	2	100	0	54	0	0	48	51	1.00
12404933--12404962	3	10.0	3	100	0	60	66	0	0	33	0.92
12407781--12407813	16	2.1	16	94	0	57	51	6	3	39	1.42
12407849--12407884	14	2.6	14	91	4	56	63	5	0	30	1.17
12409134--12409160	3	9.0	3	100	0	54	33	0	0	66	0.92
12409353--12409379	13	2.1	13	100	0	54	40	22	22	14	1.90
12412376--12412420	2	22.5	2	100	0	90	48	0	0	51	1.00
12412969--12413010	18	2.4	18	96	4	77	57	0	0	42	0.99
12413435--12413512	16	5.1	14	70	22	50	48	0	0	51	1.00
12413463--12413600	21	6.8	21	65	27	52	48	0	2	49	1.13
12413436--12413617	62	3.0	62	78	12	180	47	0	1	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12413457--12413597	16	9.6	15	71	23	88	48	0	2	49	1.13
12413441--12413560	13	8.3	14	70	21	70	48	0	1	50	1.11
12413457--12413569	21	4.5	24	72	22	90	48	0	1	49	1.11
12413439--12413805	42	8.9	41	75	9	252	48	2	1	47	1.25
12413501--12413805	21	14.7	21	77	9	225	48	3	1	46	1.29
12413784--12413899	36	3.2	37	76	12	100	42	0	3	53	1.23
12413908--12413977	8	9.2	8	72	17	60	42	0	0	57	0.99
12413922--12413969	16	3.1	15	85	8	69	47	0	0	52	1.00
12414112--12414150	18	2.2	18	85	0	51	38	2	2	56	1.27
12414125--12414401	29	10.0	29	68	18	110	40	1	4	53	1.31
12414003--12414314	155	2.0	160	79	9	338	39	2	4	53	1.35
12414080--12414182	28	3.7	26	71	15	73	41	2	3	51	1.35
12414272--12414310	18	2.2	17	86	13	53	41	2	2	53	1.28
12414036--12414423	11	39.0	10	65	24	85	41	1	4	52	1.30
12414274--12414402	29	4.5	28	87	5	134	43	0	3	51	1.25
12414361--12414452	10	9.5	10	65	23	54	46	0	1	52	1.07
12414472--12414516	22	2.1	21	91	4	72	46	0	2	51	1.13
12415059--12415265	67	3.0	69	85	5	238	35	11	6	46	1.65
12415058--12415284	72	3.2	71	82	6	230	35	11	5	47	1.63
12421961--12421986	12	2.2	12	100	0	52	53	38	0	7	1.30
12425233--12425283	3	17.0	3	100	0	102	33	0	0	66	0.92
12430388--12430428	20	2.0	21	86	9	59	48	4	4	41	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12439223--12439263	16	2.6	16	88	0	64	34	0	21	43	1.53
12439232--12439333	48	2.2	47	85	3	134	31	3	18	46	1.67
12443766--12443794	8	3.6	8	100	0	58	13	13	44	27	1.82
12451690--12451729	17	2.4	17	91	4	64	55	0	0	45	0.99
12458587--12458625	17	2.3	17	95	0	69	53	0	0	46	1.00
12458587--12458631	17	2.7	17	89	3	56	57	0	0	42	0.98
12459480--12459551	22	3.3	22	83	9	85	45	2	6	44	1.45
12460326--12460750	193	2.2	194	92	0	699	31	16	10	40	1.83
12469178--12469220	22	2.0	22	85	0	59	58	6	2	32	1.38
12469192--12469311	22	5.5	22	73	5	91	47	5	10	36	1.61
12469172--12469298	66	1.9	66	82	3	157	48	4	9	37	1.57
12469184--12469311	44	2.9	44	80	2	159	47	6	9	36	1.61
12469833--12469864	6	5.3	6	96	0	55	46	15	0	37	1.46
12473856--12473884	15	2.0	15	93	6	51	27	27	27	17	1.97
12474792--12474825	4	8.5	4	86	0	50	67	0	32	0	0.91
12476528--12476577	11	4.5	11	74	16	50	70	4	0	26	1.05
12476588--12477116	204	2.6	202	88	3	771	42	8	14	34	1.75
12477153--12477183	12	2.6	12	100	0	62	70	6	0	22	1.09
12477898--12477939	22	2.0	21	90	4	66	83	4	2	9	0.88
12484665--12484717	14	3.5	15	82	15	65	13	26	1	58	1.45
12487622--12487658	17	2.2	17	90	0	56	45	16	0	37	1.47
12487578--12487660	40	2.1	40	86	4	114	45	13	2	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12488059--12488196	62	2.2	61	84	7	181	38	2	14	44	1.57
12488050--12488222	62	2.8	61	77	10	172	39	4	15	41	1.66
12488448--12488589	61	2.3	60	82	9	164	35	4	16	42	1.68
12489348--12489414	31	2.2	31	86	0	98	37	0	17	44	1.49
12489450--12489508	25	2.4	25	86	8	77	38	8	8	44	1.65
12489737--12489782	24	1.9	24	82	8	58	50	4	0	45	1.21
12490194--12490297	15	6.8	16	66	25	55	50	0	0	48	1.07
12490182--12490244	26	2.3	26	86	10	83	50	0	0	49	1.00
12490182--12490255	26	2.9	27	77	15	68	54	0	0	45	1.00
12490182--12490251	13	5.2	13	70	13	52	54	0	0	45	0.99
12491401--12491468	3	22.7	3	100	0	136	33	0	0	66	0.92
12492397--12492497	20	5.4	20	66	28	71	58	7	2	30	1.42
12492407--12492472	34	2.0	33	88	8	98	54	7	3	34	1.44
12492450--12492495	18	2.6	18	89	6	67	60	8	2	28	1.38
12495354--12495389	17	2.1	17	100	0	72	30	5	22	41	1.76
12496312--12496368	9	5.8	9	78	15	51	80	1	5	12	0.95
12497130--12497252	64	1.9	64	83	5	158	17	19	13	49	1.79
12497679--12498409	120	6.1	120	78	2	599	19	20	13	46	1.83
12497507--12497880	176	2.1	175	79	3	394	21	18	12	47	1.81
12497354--12498120	416	1.9	408	81	4	923	20	19	13	46	1.83
12497723--12498400	359	1.9	360	78	2	752	20	20	13	46	1.83
12498662--12498711	13	4.0	12	79	7	55	8	10	2	80	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12499645--12499703	16	3.5	17	86	9	77	57	3	1	37	1.25
12502637--12502676	18	2.2	18	91	8	64	57	0	0	42	0.98
12502637--12502684	21	2.5	19	83	10	53	54	0	0	45	0.99
12504652--12504706	3	18.3	3	96	0	101	30	0	1	67	1.01
12506197--12506226	3	10.0	3	92	0	51	33	0	36	30	1.58
12507668--12507692	7	3.6	7	100	0	50	44	0	12	44	1.41
12507944--12508031	46	1.9	45	84	11	117	29	6	17	46	1.73
12521208--12521268	28	2.2	28	90	0	95	22	9	4	62	1.46
12523763--12523813	27	1.9	26	84	4	66	80	0	5	13	0.89
12524889--12524948	26	2.4	25	80	8	68	78	3	5	13	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127