genome.fa.s656.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  39  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7869950--7870110	56	2.8	57	81	8	209	43	8	13	34	1.74
7873344--7873372	10	3.0	10	95	5	51	62	0	0	37	0.96
7873851--7873894	2	22.5	2	90	4	72	47	0	2	50	1.13
7874078--7874113	2	18.0	2	88	0	54	44	2	2	50	1.31
7874293--7874332	2	20.5	2	84	5	55	52	2	0	45	1.14
7874755--7874786	5	6.4	5	100	0	64	40	0	0	59	0.97
7874898--7874947	26	1.9	26	92	8	84	44	0	6	50	1.26
7875480--7875539	26	2.3	26	85	5	77	45	0	8	46	1.33
7874765--7875893	591	1.9	594	90	2	1822	42	7	7	42	1.60
7881542--7881593	2	27.0	2	92	7	90	0	50	0	50	1.00
7881542--7881592	23	2.2	23	92	0	93	0	50	0	49	1.00
7881828--7881871	22	2.0	21	82	4	52	15	4	2	77	1.04
7882800--7882904	10	9.5	11	72	17	58	19	1	5	73	1.13
7882871--7882908	10	3.9	10	83	16	53	18	0	0	81	0.69
7882872--7882909	14	2.6	15	84	16	53	18	0	0	81	0.69
7882936--7883394	60	7.7	58	84	9	574	44	7	13	33	1.73
7882938--7883394	117	3.9	116	88	7	606	44	7	14	33	1.73
7883126--7883214	27	3.2	27	62	20	65	41	5	14	38	1.70
7885164--7885198	3	12.0	3	87	6	54	34	0	0	65	0.93
7886037--7886074	2	19.0	2	100	0	76	50	0	0	50	1.00
7886856--7886894	2	19.5	2	100	0	78	51	0	0	48	1.00
7889594--7889619	10	2.6	10	100	0	52	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7889713--7889761	25	2.0	25	92	8	82	38	10	6	44	1.63
7889934--7890004	32	2.2	31	80	7	79	56	2	2	38	1.29
7890091--7890135	23	1.9	23	86	4	63	26	11	2	60	1.42
7890897--7890952	8	6.6	8	75	16	51	48	1	0	50	1.11
7893780--7893850	36	2.0	36	83	5	90	54	0	0	45	0.99
7893855--7893968	25	4.2	27	75	11	83	44	0	2	51	1.21
7893896--7893968	26	3.0	24	79	16	71	47	1	1	49	1.18
7893883--7893968	27	3.3	24	80	11	73	45	1	2	51	1.21
7896275--7896701	43	9.8	43	81	4	399	45	15	12	26	1.81
7896264--7896701	87	5.0	87	76	7	390	45	15	12	26	1.82
7896280--7896695	130	3.2	129	76	7	401	46	15	11	26	1.80
7897125--7897194	23	3.1	23	75	4	70	41	18	10	30	1.83
7897301--7897327	14	1.9	14	100	0	54	37	7	7	48	1.59
7898621--7898736	7	16.1	7	82	12	87	14	12	0	73	1.10
7898654--7898738	8	10.8	8	81	13	52	11	10	0	77	0.99
7905786--7905826	21	2.0	21	85	9	57	73	4	2	19	1.13
7907821--7907859	19	2.1	18	95	4	69	23	20	15	41	1.90
7907644--7908021	195	1.9	194	91	1	614	25	17	14	42	1.87
7910174--7910205	17	1.9	17	93	6	57	3	6	3	87	0.73
7910176--7910213	18	2.2	18	90	4	60	2	5	5	86	0.76
7914353--7914402	21	2.4	21	86	0	64	52	0	12	36	1.39
7919550--7919629	37	2.2	37	93	6	137	31	47	5	16	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7920532--7920570	13	3.1	13	92	3	62	76	15	2	5	1.06
7920549--7920586	18	2.1	19	85	5	51	76	15	5	2	1.08
7920970--7921025	28	2.0	28	85	0	76	41	17	17	23	1.90
7921253--7921321	18	3.8	18	74	12	52	20	2	4	72	1.15
7921681--7921796	15	7.9	15	72	7	94	46	32	0	20	1.51
7921679--7921794	30	4.0	29	85	7	146	46	31	0	22	1.52
7921681--7921799	44	2.7	44	81	3	132	47	31	0	20	1.50
7921923--7922014	29	3.2	29	77	7	89	43	30	2	23	1.66
7922097--7922162	14	4.7	14	74	7	53	51	27	0	21	1.48
7922044--7922169	28	4.4	28	77	10	121	51	24	0	23	1.48
7922097--7922164	15	4.8	15	71	10	63	51	26	0	22	1.48
7922124--7922183	28	2.1	28	84	0	75	56	28	0	15	1.39
7924067--7924110	23	1.9	23	85	0	61	38	6	4	50	1.50
7928221--7928255	16	2.2	16	95	5	63	85	0	14	0	0.59
7928768--7928806	18	2.1	19	95	4	71	25	25	12	35	1.92
7928822--7928863	9	4.7	9	77	11	50	85	0	4	9	0.72
7935803--7935837	16	2.2	16	95	5	63	85	0	14	0	0.59
7936347--7936385	18	2.1	19	95	4	71	25	25	12	35	1.92
7936401--7936442	9	4.7	9	77	11	50	85	0	4	9	0.72
7938450--7938618	86	2.0	86	83	4	216	24	17	17	40	1.90
7938538--7938748	109	1.9	109	85	3	291	24	19	17	38	1.92
7938735--7938800	22	3.0	22	84	6	71	24	13	22	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7938872--7939374	132	3.8	132	80	2	557	24	21	17	37	1.94
7939224--7939285	22	2.8	22	77	0	70	30	20	17	30	1.96
7939268--7939536	109	2.5	107	82	5	315	23	21	18	37	1.94
7939334--7939571	109	2.2	109	77	6	239	23	21	17	37	1.94
7939501--7939614	36	3.2	36	82	2	149	21	20	14	42	1.88
7940906--7940955	24	2.1	23	82	10	57	16	0	6	78	0.95
7941326--7941563	15	16.2	14	72	11	147	48	30	0	20	1.53
7941326--7941456	44	3.0	44	88	6	194	46	34	0	19	1.50
7941434--7941621	74	2.6	74	80	5	195	48	27	1	23	1.58
7941522--7941663	58	2.4	59	79	12	148	47	26	1	24	1.60
7941632--7941829	58	3.4	57	72	11	170	46	31	1	20	1.57
7941596--7941843	29	8.6	29	71	8	134	46	31	1	20	1.58
7941876--7941915	15	2.7	15	88	3	64	55	22	0	22	1.44
7941856--7941917	22	2.9	22	77	20	76	51	24	0	24	1.48
7941856--7941916	15	4.2	15	73	21	58	52	24	0	22	1.47
7943817--7944017	100	2.0	101	84	8	268	39	30	7	22	1.83
7944053--7944102	19	2.6	19	90	6	75	50	42	2	6	1.38
7945280--7945313	12	2.8	12	100	0	68	61	0	5	32	1.20
7955734--7955774	14	2.9	15	78	10	50	39	2	0	58	1.11
7956355--7956394	21	1.9	21	85	10	55	55	0	0	45	0.99
7959821--7959898	27	2.8	28	83	13	81	34	12	1	51	1.48
7959834--7959898	30	2.3	28	84	12	80	38	15	1	44	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7961947--7962024	19	4.1	19	79	9	86	55	12	3	28	1.55
7962228--7962297	13	5.4	13	75	23	58	74	0	4	21	0.99
7962228--7962269	23	1.9	23	90	9	70	71	0	0	28	0.86
7962289--7962349	18	3.5	17	72	17	54	78	11	3	6	1.05
7962266--7962332	21	3.3	20	77	8	64	79	7	5	7	1.07
7962305--7962354	17	3.1	16	76	20	50	80	10	6	4	1.02
7969549--7969577	13	2.1	14	93	6	51	51	6	6	34	1.55
7969559--7969655	20	4.7	21	76	17	89	50	11	5	32	1.60
7969846--7969890	20	2.2	20	88	0	63	64	0	0	35	0.94
7969841--7969879	13	2.9	14	84	3	53	66	0	0	33	0.92
7969858--7969890	10	3.3	10	84	16	50	63	0	0	36	0.95
7970818--7970855	18	2.1	18	90	0	58	68	5	0	26	1.11
7971453--7971503	17	3.0	17	74	5	50	37	21	17	23	1.94
7971493--7971596	18	5.9	18	74	6	79	37	14	12	35	1.84
7971929--7972070	46	3.1	46	75	6	144	38	16	8	36	1.79
7977698--7977888	102	1.9	103	84	5	262	34	9	13	42	1.77
7978054--7978142	20	4.2	21	73	19	87	50	11	4	33	1.58
7978056--7978116	23	2.8	21	85	7	86	54	11	4	29	1.57
7978058--7978132	23	3.5	20	80	12	71	48	13	5	33	1.65
7978375--7978428	12	4.3	12	79	6	54	75	7	5	11	1.16
7978631--7978680	20	2.5	21	93	6	86	50	0	0	50	1.00
7978665--7978704	16	2.7	14	88	7	53	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7978670--7978706	8	4.6	8	86	0	56	56	0	0	43	0.99
7978670--7978721	26	2.1	24	85	7	68	59	0	0	40	0.97
7978667--7978714	14	3.3	14	80	11	51	60	0	0	39	0.97
7979533--7979568	14	2.5	15	90	4	56	13	2	22	61	1.46
7979698--7979739	18	2.3	18	100	0	84	9	9	4	76	1.15
7979782--7979826	16	2.6	17	89	6	65	57	8	0	33	1.30
7983868--7983899	15	2.1	15	94	0	55	75	0	0	25	0.81
7983968--7984080	56	2.0	56	87	3	165	53	17	7	20	1.68
7986791--7986819	2	14.5	2	100	0	58	0	48	0	51	1.00
7989748--7989819	34	2.1	34	92	0	117	27	23	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127