genome.fa.s656.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  92  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17329358--17329615	22	11.6	22	68	15	102	36	9	6	46	1.64
17329508--17329630	44	2.8	43	81	8	122	37	8	4	48	1.56
17329553--17329630	22	3.6	21	77	6	75	34	7	5	52	1.52
17329551--17329639	44	2.0	44	82	8	110	33	8	6	50	1.60
17330062--17330453	193	2.0	193	96	0	730	39	13	10	36	1.79
17331223--17331256	11	3.1	11	95	0	59	47	20	8	23	1.78
17334157--17334222	21	3.2	21	80	2	71	46	6	25	21	1.74
17336139--17336171	17	2.0	17	88	5	50	81	0	15	3	0.80
17337970--17338040	36	2.0	36	94	0	124	35	15	9	39	1.81
17338725--17338763	17	2.3	17	86	0	60	48	2	0	48	1.15
17340522--17340556	17	2.1	17	88	0	52	42	2	0	54	1.15
17341678--17341742	18	3.6	17	80	10	76	80	0	16	3	0.85
17341678--17341749	36	2.0	35	86	7	101	80	0	16	2	0.83
17342404--17342483	21	3.7	21	80	14	83	80	3	16	0	0.86
17342426--17342483	15	4.0	14	78	13	55	84	1	13	0	0.70
17342420--17342483	9	7.2	9	80	7	60	82	1	15	0	0.74
17342948--17343091	5	28.4	5	68	19	59	72	0	20	6	1.12
17342995--17343091	24	4.0	23	74	16	72	74	1	19	5	1.07
17342953--17343091	23	5.8	24	72	16	85	71	0	20	7	1.13
17344151--17344379	32	7.2	32	76	11	179	36	20	13	28	1.92
17344117--17344378	125	2.1	124	79	8	273	36	19	15	29	1.92
17344365--17344487	32	3.8	31	74	8	88	35	19	17	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17344329--17344494	64	2.6	62	77	11	176	36	21	14	27	1.92
17348351--17348419	9	7.8	9	73	14	54	76	1	8	13	1.07
17348383--17348420	10	3.9	10	86	3	51	76	0	5	18	0.97
17348351--17348420	17	3.9	19	74	10	60	75	1	8	14	1.10
17353668--17353740	8	8.9	8	76	5	56	75	1	1	21	0.96
17353668--17353715	8	5.9	8	87	4	69	75	2	0	22	0.91
17353670--17353720	17	3.1	17	86	8	70	74	1	0	23	0.92
17353675--17353739	34	1.9	34	84	9	89	72	1	1	24	1.02
17354134--17354182	19	2.5	20	87	6	66	81	6	8	4	0.97
17357744--17357783	20	2.0	20	85	9	55	42	15	10	32	1.79
17359014--17359113	34	2.9	34	80	5	112	42	9	12	37	1.74
17359014--17359129	34	3.4	34	80	0	106	40	8	13	37	1.76
17359185--17359232	24	2.0	24	95	0	87	33	10	8	47	1.68
17362249--17362282	17	2.0	17	88	11	52	17	2	11	67	1.34
17363027--17363195	90	1.9	89	92	1	284	36	13	17	31	1.89
17365179--17365272	34	2.8	34	85	0	125	37	14	14	32	1.88
17367043--17367090	21	2.3	21	78	7	53	47	33	0	18	1.49
17367052--17367093	20	2.1	20	82	8	50	50	28	0	21	1.49
17373507--17373580	36	2.1	36	97	0	139	31	17	6	44	1.75
17376432--17376499	9	8.4	8	78	16	61	83	0	13	2	0.75
17376435--17376499	24	2.7	23	81	9	67	83	0	13	3	0.77
17376432--17376499	33	2.1	34	86	13	99	83	0	13	2	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17377596--17377827	98	2.4	93	77	9	223	27	16	10	46	1.79
17377634--17377896	47	5.5	48	74	6	196	27	16	11	45	1.81
17377634--17377831	94	2.1	97	82	5	242	26	17	9	46	1.78
17377696--17377898	94	2.1	94	79	7	223	26	16	10	46	1.80
17378118--17378159	22	1.9	22	95	0	75	38	16	9	35	1.81
17378283--17378340	10	5.9	10	76	11	57	41	15	12	31	1.84
17378270--17378327	29	2.0	30	93	3	100	43	15	12	29	1.83
17378312--17378349	20	1.9	20	84	10	51	44	15	10	28	1.80
17380382--17380412	14	2.2	14	94	0	53	48	29	6	16	1.70
17380422--17380461	21	1.9	21	89	0	62	47	40	2	10	1.50
17380400--17380996	310	1.9	312	89	4	925	35	17	7	39	1.77
17381859--17381883	12	2.1	12	100	0	50	60	8	8	24	1.52
17384964--17385368	144	2.8	143	78	6	431	41	13	14	30	1.84
17385858--17386058	12	17.3	12	67	26	64	3	1	16	77	1.00
17385902--17386058	6	26.7	6	78	16	95	3	1	15	78	0.96
17385859--17386058	7	27.6	7	72	19	119	3	2	17	77	1.00
17385852--17386058	20	9.9	20	71	22	101	3	2	16	77	1.01
17386251--17386321	36	2.0	36	82	0	88	53	8	15	22	1.69
17386331--17386561	35	6.6	34	75	11	146	54	13	15	15	1.71
17386514--17386776	107	2.5	107	80	6	286	53	12	17	16	1.73
17386742--17386809	35	1.9	35	91	5	111	55	13	14	16	1.69
17386760--17386865	36	3.0	36	75	9	92	56	13	13	16	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17386889--17387165	36	7.8	35	74	7	166	46	11	20	20	1.82
17386943--17387109	71	2.3	73	78	4	196	46	10	20	22	1.81
17387365--17387502	36	3.9	36	80	0	134	50	15	18	15	1.79
17387638--17387764	35	3.6	35	72	14	109	55	13	13	17	1.68
17387648--17388144	106	4.7	105	74	10	351	54	14	14	16	1.71
17387887--17388261	35	10.8	35	75	11	220	54	14	14	16	1.72
17387822--17388231	72	5.9	72	70	13	198	54	13	14	16	1.72
17388076--17388153	34	2.3	34	88	6	113	58	11	14	15	1.62
17387794--17388144	35	10.1	35	73	10	132	53	14	15	15	1.73
17388178--17388562	35	11.2	34	70	11	106	55	14	13	16	1.70
17388448--17388562	34	3.4	34	84	2	140	53	17	14	14	1.74
17388486--17388642	79	2.0	79	82	2	190	56	15	13	15	1.68
17388636--17388743	37	3.0	35	73	10	101	53	11	16	18	1.72
17389331--17389512	80	2.3	80	80	3	215	34	13	13	38	1.84
17397659--17398034	144	2.6	144	84	2	470	41	15	14	28	1.86
17403796--17403924	19	6.6	19	72	11	91	45	24	6	22	1.77
17403798--17403924	59	2.2	58	86	1	191	45	25	7	22	1.77
17405449--17405480	14	2.4	14	94	5	57	6	6	6	81	0.99
17407896--17407927	15	2.1	15	94	0	55	65	9	18	6	1.42
17412897--17413276	195	2.0	194	93	1	645	50	11	16	21	1.76
17419883--17419917	16	2.2	16	94	0	61	42	11	14	31	1.81
17428186--17428271	42	2.1	41	84	6	111	36	6	12	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17428364--17428393	3	10.0	3	92	0	51	33	3	0	63	1.11
17428443--17428514	3	24.0	3	97	0	135	66	1	0	31	1.00
17434699--17435008	129	2.4	131	81	8	366	47	9	20	21	1.78
17434907--17435210	141	2.2	135	73	10	284	51	7	19	21	1.71
17437083--17437213	64	2.0	64	86	0	181	38	26	13	21	1.91
17437094--17437210	32	3.7	32	71	8	103	39	29	11	19	1.88
17437205--17437248	23	1.9	23	90	0	70	27	18	20	34	1.96
17437321--17437426	23	4.7	23	71	2	97	32	22	16	28	1.96
17437324--17437426	45	2.3	46	89	1	154	32	22	16	29	1.96
17437816--17437901	17	5.2	17	80	14	74	83	12	0	3	0.76
17437825--17437900	20	3.9	19	78	8	82	82	14	0	2	0.77
17437823--17437901	6	13.5	6	77	10	74	83	13	0	2	0.75
17437823--17437913	29	3.2	29	82	1	112	81	14	2	2	0.89
17440572--17440602	3	10.0	3	93	6	53	67	0	0	32	0.91
17447888--17447935	25	2.0	24	83	4	60	31	2	10	56	1.45
17458306--17458347	11	3.7	11	84	12	50	85	2	9	2	0.77
17460052--17460109	4	13.8	4	76	16	55	74	0	0	25	0.82
17460052--17460105	18	3.1	18	78	13	67	74	0	0	25	0.83
17462144--17462331	19	9.6	19	71	9	83	46	24	6	21	1.76
17470084--17470295	49	4.3	49	79	3	178	33	14	10	40	1.81
17470086--17470334	97	2.5	97	73	7	227	34	14	10	40	1.80
17470213--17470333	49	2.4	48	77	13	120	38	14	8	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17477125--17477154	15	2.0	15	93	0	51	63	0	0	36	0.95
17479168--17479205	18	2.1	18	95	0	67	26	18	0	55	1.43
17490501--17490542	20	2.1	20	86	0	57	38	4	21	35	1.75
17491420--17491594	3	60.3	3	79	15	172	30	2	4	62	1.25
17491452--17491660	106	2.0	105	82	9	255	30	3	4	61	1.31
17491455--17491655	103	2.0	102	80	11	234	30	3	4	61	1.33
17492494--17492577	13	6.4	12	72	20	62	21	2	3	72	1.11
17492493--17492536	20	2.3	19	88	4	61	20	2	4	72	1.13
17492500--17492550	21	2.5	20	87	3	66	15	1	5	76	1.07
17492492--17492589	14	6.6	14	72	17	58	22	2	3	72	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127