Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  127  of  127  ( 15156 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25788698--25788762
22
2.9
22
77
18
62
36
0
1
61
1.05
25791691--25791725
4
8.8
4
87
0
52
25
5
22
45
1.74
25792821--25792860
18
2.2
18
90
0
62
40
22
15
22
1.91
25792859--25792958
50
2.0
50
100
0
200
40
18
14
28
1.89
25794513--25794549
2
19.0
2
94
5
67
48
0
0
51
1.00
25795002--25795028
11
2.5
11
100
0
54
37
0
0
62
0.95
25795544--25795596
2
27.0
2
84
3
72
47
0
3
49
1.19
25796323--25796378
21
2.8
21
78
5
62
50
0
0
50
1.00
25796323--25796400
39
2.0
40
80
12
90
47
2
1
48
1.23
25803824--25804302
176
2.7
176
77
6
414
47
3
5
44
1.42
25804277--25804321
16
2.7
17
83
13
58
53
0
6
40
1.27
25804277--25804328
16
3.2
16
81
13
54
55
0
5
38
1.24
25803828--25808939
535
9.6
529
73
11
2339
42
6
7
43
1.59
25804320--25807263
179
16.4
178
74
11
1551
42
6
7
43
1.59
25805229--25805253
10
2.5
10
100
0
50
24
0
0
76
0.80
25805228--25805268
19
2.2
19
86
0
55
34
0
2
63
1.08
25804002--25808027
360
11.4
354
73
11
1611
42
6
7
43
1.59
25807142--25807418
155
1.8
152
81
6
346
36
5
10
47
1.60
25807510--25808303
181
4.4
178
78
7
669
41
6
7
44
1.59
25808405--25808453
24
2.0
24
96
0
89
26
8
4
61
1.42
25808405--25808467
24
2.6
24
84
2
72
25
7
3
63
1.37
25809309--25810998
178
9.5
176
72
11
876
39
6
9
44
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25811200--25811693
177
2.8
173
75
7
463
41
7
9
41
1.65
25812166--25812960
177
4.4
176
75
9
538
40
7
9
41
1.67
25813310--25813342
16
2.0
17
88
5
50
48
3
9
39
1.50
25812963--25813940
179
5.5
177
77
7
753
41
7
8
42
1.64
25813103--25813879
359
2.2
361
78
6
815
42
7
8
42
1.62
25813661--25814207
283
1.9
285
83
5
705
39
7
7
44
1.61
25813958--25814682
181
4.1
179
78
8
653
41
7
8
43
1.63
25814588--25814789
106
1.9
107
85
1
280
47
5
8
37
1.59
25814694--25818024
179
18.6
179
73
9
1515
41
7
9
42
1.64
25815119--25815170
16
3.0
18
77
11
63
48
7
7
36
1.61
25814696--25818106
537
6.4
530
75
9
1786
41
7
8
42
1.63
25815212--25816770
714
2.2
711
77
8
1547
41
6
9
42
1.62
25815374--25816948
714
2.2
716
77
8
1549
41
6
9
43
1.62
25816968--25818024
180
5.8
179
75
10
580
40
7
8
43
1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127

The End!