genome.fa.s656.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  23  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5084431--5084485	20	2.6	21	75	18	60	52	0	1	45	1.11
5084628--5084695	26	2.4	27	80	14	75	57	1	1	39	1.17
5099536--5099609	38	1.9	38	97	0	139	43	14	18	22	1.87
5100134--5100163	12	2.5	12	88	0	51	70	0	0	30	0.88
5102167--5102239	37	2.0	37	94	0	128	43	5	16	34	1.71
5104459--5104491	13	2.5	13	100	0	66	9	33	12	45	1.73
5114453--5114487	15	2.5	14	90	9	54	60	14	0	25	1.35
5114956--5115142	64	2.9	63	80	10	236	49	5	8	36	1.56
5114965--5115168	65	3.2	63	78	12	227	50	4	7	36	1.51
5114965--5115169	64	3.2	62	76	14	218	50	4	7	37	1.51
5115569--5115614	17	2.7	18	83	6	60	28	17	6	47	1.72
5115856--5115903	18	2.8	18	75	18	57	50	0	0	50	1.00
5115911--5115961	17	2.7	18	82	14	59	49	0	0	50	1.00
5115889--5115984	41	2.4	41	81	11	103	45	0	0	54	0.99
5119728--5119768	19	2.3	18	87	8	57	31	0	0	68	0.90
5122679--5122945	129	2.1	129	98	0	516	34	15	24	26	1.95
5123026--5123174	60	2.5	60	97	1	282	28	9	30	30	1.88
5123144--5123345	99	2.0	99	93	0	341	30	12	24	33	1.92
5123243--5123711	183	2.6	183	95	0	839	30	13	24	31	1.93
5123426--5123993	282	2.0	282	95	0	1010	29	14	24	31	1.95
5123609--5123810	99	2.0	99	90	1	316	29	13	23	33	1.93
5123085--5124054	465	2.1	465	95	0	1735	29	14	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5123708--5124054	183	1.9	183	91	1	570	29	16	24	30	1.96
5128519--5128616	48	2.0	48	96	0	178	36	7	19	36	1.79
5130899--5130936	20	1.9	20	88	0	58	68	2	2	26	1.16
5131372--5131406	18	1.9	18	94	0	61	54	5	5	34	1.48
5134479--5134546	21	3.1	21	74	15	66	61	0	0	38	0.96
5136893--5136965	37	2.0	37	94	0	128	43	5	16	34	1.71
5149220--5149254	15	2.5	14	90	9	54	60	14	0	25	1.35
5149723--5149909	64	2.9	63	80	8	243	49	5	9	36	1.57
5149733--5149909	65	2.8	63	82	10	241	49	3	9	36	1.54
5149732--5149935	65	3.2	63	79	11	234	50	4	8	36	1.53
5149732--5149936	64	3.2	62	76	13	225	50	4	8	37	1.53
5150335--5150386	17	3.1	17	83	5	61	28	15	5	50	1.67
5150628--5150675	18	2.8	18	75	18	57	50	0	0	50	1.00
5150699--5150732	13	2.6	13	85	0	50	52	0	0	47	1.00
5150683--5150723	18	2.2	19	86	4	57	48	0	0	51	1.00
5153448--5153472	11	2.3	11	100	0	50	28	0	32	40	1.57
5153644--5153710	27	2.7	24	76	19	66	61	1	0	37	1.05
5153990--5154108	53	2.2	56	92	7	201	40	1	12	45	1.52
5157100--5157366	129	2.1	129	99	0	525	34	15	24	25	1.95
5157505--5157706	99	2.0	99	93	0	341	30	12	24	33	1.92
5157322--5157889	282	2.0	282	95	0	1019	30	13	24	32	1.93
5157604--5158000	183	2.2	183	96	0	722	30	13	25	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5157876--5158141	141	1.9	141	96	0	496	30	11	28	30	1.92
5157693--5158537	324	2.6	324	98	0	1618	30	13	25	30	1.94
5158200--5158462	141	1.9	141	99	0	517	30	11	27	29	1.92
5158435--5158636	99	2.0	99	89	1	307	29	13	23	32	1.94
5158534--5158880	183	1.9	183	91	1	570	29	15	24	29	1.96
5163358--5163455	48	2.0	48	98	0	187	39	7	17	35	1.77
5164976--5165010	17	2.1	17	89	5	54	45	5	2	45	1.41
5165106--5165177	29	2.4	28	80	11	72	61	2	1	34	1.19
5165478--5165502	12	2.1	12	100	0	50	40	0	0	60	0.97
5165803--5165840	20	1.9	20	88	0	58	68	2	2	26	1.16
5166278--5166312	18	1.9	18	94	0	61	54	5	5	34	1.48
5169401--5169467	23	3.0	22	76	6	64	56	2	0	40	1.14
5169566--5169638	36	2.0	36	97	0	137	38	8	12	41	1.73
5180945--5180977	2	17.0	2	93	6	59	51	0	0	48	1.00
5181977--5182007	11	2.8	11	95	0	53	48	12	32	6	1.67
5182880--5182917	20	1.9	20	88	0	58	39	2	31	26	1.70
5183261--5183442	91	2.0	92	96	1	339	46	13	12	27	1.79
5190271--5190296	4	6.5	4	100	0	52	26	50	23	0	1.50
5196049--5196090	11	3.6	11	81	12	57	69	0	0	30	0.89
5196157--5196200	12	3.6	12	81	6	52	45	2	0	52	1.13
5201049--5201112	32	2.0	32	87	0	92	31	17	28	23	1.97
5211329--5211359	16	1.9	16	93	0	53	0	19	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5211400--5211450	26	2.0	26	84	7	68	29	15	3	50	1.62
5212147--5212183	18	2.1	19	85	10	51	40	0	0	59	0.97
5214022--5214047	13	2.0	13	100	0	52	38	0	0	61	0.96
5214021--5214050	13	2.4	12	89	10	51	33	0	0	66	0.92
5214089--5214124	17	2.1	17	89	5	54	77	2	0	19	0.88
5214089--5214124	18	2.1	18	89	5	56	77	2	0	19	0.88
5217534--5217586	25	2.3	24	82	17	69	71	11	3	13	1.26
5218333--5218539	110	1.9	110	91	0	342	32	13	31	22	1.92
5224361--5224574	107	2.0	107	97	0	401	40	14	24	21	1.90
5232888--5233631	371	2.0	370	96	0	1364	16	35	25	22	1.95
5233638--5234703	370	2.9	371	93	1	1824	23	24	35	16	1.95
5241168--5241198	7	4.3	7	92	8	53	45	0	54	0	0.99
5241168--5241198	15	2.1	14	94	5	53	45	0	54	0	0.99
5244883--5244934	27	1.9	27	88	0	77	38	7	1	51	1.42
5248645--5248678	2	17.0	2	93	0	59	0	47	2	50	1.16
5254842--5254875	7	5.1	7	89	10	54	14	14	26	44	1.84
5254842--5254872	13	2.4	13	94	0	53	16	16	25	41	1.88
5256132--5256158	10	2.7	10	100	0	54	59	11	0	29	1.32
5262449--5265503	759	4.0	762	96	1	5618	27	15	14	41	1.86
5275691--5275982	145	2.0	146	97	0	550	28	13	16	41	1.86
5278957--5279005	21	2.3	20	83	10	62	53	16	8	22	1.69
5280615--5280704	44	2.0	44	100	0	180	35	14	8	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5283242--5283298	17	3.7	16	75	13	57	52	0	1	45	1.11
5285012--5285063	20	2.6	19	77	17	52	71	3	23	1	1.13
5285555--5285591	2	18.5	2	100	0	74	48	0	0	51	1.00
5285906--5285937	14	2.2	15	94	5	57	28	0	0	71	0.86
5295687--5295714	2	14.0	2	100	0	56	50	0	0	50	1.00
5296641--5296714	37	2.0	37	94	0	130	39	5	9	45	1.59
5297160--5297191	15	2.1	15	94	0	55	43	9	6	40	1.62
5300216--5300311	49	1.9	50	91	2	158	42	5	6	45	1.51
5304720--5304766	20	2.3	20	88	3	67	27	4	2	65	1.22
5305298--5305331	17	2.1	16	94	5	59	23	14	17	44	1.86
5306962--5306992	16	1.9	16	93	0	53	54	12	0	32	1.38
5310232--5310268	2	18.5	2	100	0	74	0	48	0	51	1.00
5320874--5320944	17	4.2	17	87	7	74	50	28	0	21	1.49
5321912--5321940	6	4.8	6	100	0	58	68	13	0	17	1.20
5321975--5322413	57	7.7	57	84	5	568	35	12	7	44	1.70
5321975--5322413	112	3.9	109	83	11	510	35	12	7	44	1.70
5321975--5322413	169	2.6	170	92	4	722	35	12	7	44	1.70
5322438--5322514	19	4.1	18	75	22	70	77	1	6	14	1.02
5322442--5322526	6	13.7	6	68	19	50	77	1	5	15	1.01
5322442--5322520	31	2.5	33	82	17	96	77	1	6	15	1.03
5322442--5322490	16	3.1	15	80	11	53	79	0	4	16	0.88
5323093--5323144	26	2.0	27	84	3	70	44	17	5	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5323494--5323579	12	6.6	13	71	18	56	70	1	2	25	1.06
5323428--5323533	32	3.3	32	78	13	103	64	1	8	25	1.32
5323526--5323608	17	4.8	17	77	18	66	68	3	0	27	1.06
5323544--5323606	25	2.8	23	80	17	62	65	3	0	31	1.09
5323502--5323606	8	13.9	8	72	16	55	65	2	1	29	1.17
5323875--5323942	11	6.5	11	79	12	72	1	1	11	85	0.74
5323875--5323942	21	3.1	22	81	12	77	1	1	11	85	0.74
5323875--5323942	32	2.1	31	86	5	91	1	1	11	85	0.74
5323954--5324138	41	4.5	41	88	4	275	36	23	17	22	1.95
5324115--5324163	25	2.0	25	100	0	98	34	36	16	12	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127