genome.fa.s656.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  52  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10311722--10311756	2	17.5	2	100	0	70	48	0	0	51	1.00
10313465--10313519	29	1.9	28	82	10	67	65	14	5	14	1.44
10315265--10315295	2	15.5	2	100	0	62	51	0	0	48	1.00
10315684--10315715	2	16.0	2	100	0	64	50	0	0	50	1.00
10320829--10320937	34	3.3	32	71	18	89	33	16	8	42	1.78
10320846--10321124	61	4.5	62	77	8	219	30	18	14	36	1.91
10321313--10321346	16	2.1	16	89	10	52	2	20	0	76	0.92
10322556--10322630	6	12.5	6	78	10	55	21	2	1	74	1.01
10322589--10322637	3	17.3	3	84	16	61	28	0	0	71	0.86
10322589--10322661	7	9.8	8	77	16	52	21	4	0	73	0.99
10322593--10322667	12	6.1	12	69	16	55	21	4	0	74	0.98
10323721--10323799	5	15.6	5	72	17	65	16	5	2	75	1.08
10323737--10323777	19	2.1	19	86	4	55	14	7	2	75	1.12
10323728--10323800	36	2.1	33	87	7	101	17	4	2	75	1.08
10323729--10323799	30	2.4	30	80	4	81	16	4	2	76	1.07
10323820--10324169	59	5.9	58	87	4	432	46	7	12	33	1.71
10324111--10324151	18	2.3	18	87	4	57	63	2	4	29	1.28
10327314--10327345	15	2.1	16	94	5	57	18	18	6	56	1.62
10334581--10334618	8	4.8	8	87	9	51	81	2	5	10	0.94
10334569--10334629	18	3.3	18	76	21	56	78	1	8	11	1.02
10335505--10335900	57	6.7	56	83	11	481	34	11	6	46	1.66
10335505--10335899	120	3.3	119	87	7	565	34	11	6	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10335505--10335898	178	2.2	181	88	7	587	34	11	6	47	1.66
10335954--10335992	17	2.3	17	86	0	51	76	5	7	10	1.13
10335963--10335997	17	2.1	17	88	0	52	77	5	8	8	1.13
10336914--10336961	18	2.8	17	84	9	62	60	6	8	25	1.49
10336937--10336987	22	2.2	24	86	6	70	68	1	5	23	1.22
10337012--10337146	10	13.4	10	68	21	61	67	3	1	27	1.16
10337022--10337077	19	2.8	21	81	13	64	62	3	0	33	1.12
10337009--10337186	82	2.3	77	81	11	193	69	3	3	23	1.20
10337019--10337142	22	5.8	22	69	18	84	66	4	1	28	1.19
10337098--10337164	29	2.4	27	82	7	89	71	4	0	23	1.04
10337867--10338121	42	6.1	41	83	1	267	24	16	21	36	1.94
10337868--10338098	83	2.8	83	84	3	257	24	16	20	38	1.92
10337868--10338110	125	1.9	125	83	6	314	24	16	20	38	1.93
10338129--10338158	9	3.2	9	90	9	51	86	0	0	13	0.57
10338339--10338379	6	6.7	6	84	15	57	19	0	0	80	0.71
10338338--10338405	5	13.4	5	75	14	50	16	4	0	79	0.89
10338338--10338405	11	6.2	10	79	14	64	16	4	0	79	0.89
10339424--10339502	5	15.6	5	73	19	58	15	5	2	77	1.05
10339424--10339493	17	4.1	16	72	15	59	14	5	2	77	1.07
10339431--10339503	35	2.1	34	87	7	103	16	4	2	76	1.05
10339432--10339502	30	2.4	31	80	7	83	15	4	2	77	1.04
10339523--10339715	58	3.3	59	80	11	234	44	6	13	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10343144--10343204	24	2.4	25	78	10	63	34	14	3	47	1.61
10345149--10345192	23	1.9	24	86	9	65	47	0	6	45	1.29
10348399--10348466	29	2.3	30	85	7	86	54	5	8	30	1.55
10348421--10348476	29	1.9	29	82	13	71	58	5	5	30	1.42
10348814--10348838	2	12.5	2	100	0	50	48	0	0	52	1.00
10356266--10356315	18	2.8	20	74	20	56	28	4	0	68	1.08
10357109--10357141	13	2.3	15	85	15	52	54	6	0	39	1.25
10357111--10357141	14	2.3	14	94	5	55	54	6	0	38	1.26
10358508--10358537	2	15.5	2	93	6	53	50	0	0	50	1.00
10367265--10367930	128	5.2	127	92	3	1002	31	19	17	31	1.95
10367482--10367550	22	3.1	22	81	4	77	34	23	17	24	1.96
10367610--10367677	21	3.1	22	79	6	68	35	26	17	20	1.95
10367265--10367930	255	2.6	255	89	3	1011	31	19	17	31	1.95
10367745--10367802	22	2.6	22	86	0	80	29	31	18	20	1.97
10367866--10367943	22	3.5	22	78	3	77	29	24	14	32	1.94
10367756--10368040	148	1.9	150	86	1	403	30	18	16	34	1.93
10367970--10368201	88	2.6	87	87	4	315	33	15	17	34	1.91
10373621--10374031	197	2.1	200	81	4	483	43	16	23	16	1.88
10377291--10377342	24	2.1	24	82	3	59	17	17	0	65	1.28
10377534--10377597	18	3.5	18	74	15	51	31	0	1	67	1.00
10380674--10380713	14	2.9	14	88	0	62	30	30	2	37	1.71
10382015--10382047	16	2.0	17	88	5	50	3	21	9	66	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10385042--10385130	24	3.5	24	76	18	83	30	0	10	59	1.30
10386123--10386213	3	30.3	3	76	16	82	62	0	3	34	1.11
10386123--10386213	28	3.2	28	80	14	82	62	0	3	34	1.11
10386124--10386189	31	2.2	31	84	12	86	66	0	0	33	0.92
10386138--10386227	25	3.7	23	75	22	78	57	0	4	37	1.19
10386462--10387394	119	7.8	119	79	1	841	46	15	19	18	1.83
10386526--10387394	357	2.4	355	80	3	990	46	15	19	18	1.84
10387549--10387646	41	2.4	41	85	0	124	37	25	10	26	1.88
10398855--10398913	25	2.5	24	83	5	66	77	5	3	13	1.05
10399806--10399861	3	19.0	3	76	10	53	57	0	7	35	1.26
10399786--10399837	22	2.4	22	84	12	63	63	1	1	32	1.16
10399809--10399874	19	3.3	19	75	19	71	54	0	7	37	1.29
10399787--10399874	41	2.1	41	83	4	106	56	1	5	36	1.30
10399805--10399876	22	3.2	21	77	12	72	54	0	6	38	1.28
10399809--10399878	13	5.2	14	75	17	60	54	0	7	38	1.28
10401338--10401378	15	2.6	16	88	11	59	39	0	0	60	0.96
10401808--10401845	16	2.3	17	90	4	60	26	0	2	71	1.00
10403549--10403582	18	1.9	18	88	5	52	8	2	11	76	1.12
10404577--10404612	16	2.2	16	90	0	54	75	8	8	8	1.21
10405232--10405268	19	1.9	19	88	0	56	29	10	27	32	1.90
10409610--10409810	100	2.0	99	88	0	294	19	27	20	32	1.97
10409868--10409898	8	3.9	8	91	0	53	22	3	0	74	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10409866--10409915	16	3.2	15	83	8	64	20	4	0	76	0.95
10410430--10410473	21	2.2	21	84	11	58	9	9	2	79	1.02
10410430--10410463	18	1.9	18	88	5	52	5	8	2	82	0.93
10410555--10410585	13	2.3	14	94	5	55	9	6	0	83	0.79
10410790--10411080	146	2.0	147	89	4	455	29	12	6	51	1.65
10414844--10414919	37	2.0	38	92	2	127	47	6	27	18	1.73
10433682--10434453	310	2.5	308	83	5	950	25	27	13	33	1.94
10437394--10437418	13	1.9	13	100	0	50	4	8	0	88	0.64
10438269--10438328	19	3.1	19	73	4	57	11	6	3	78	1.06
10438384--10438424	20	2.0	21	90	4	66	19	4	2	73	1.13
10438916--10438963	26	2.0	25	84	12	64	56	0	4	39	1.19
10447191--10447459	134	2.0	134	92	1	450	27	13	20	39	1.89
10460782--10460855	30	2.5	30	75	4	78	40	0	1	58	1.07
10460822--10460873	22	2.5	22	93	6	90	50	0	0	50	1.00
10462682--10462710	14	2.1	14	93	6	51	34	6	0	58	1.25
10463625--10463674	23	2.1	24	88	3	75	42	0	0	58	0.98
10464343--10464429	45	1.9	45	88	4	131	39	16	25	19	1.92
10479303--10479570	145	1.8	145	83	3	351	33	12	13	40	1.82
10481871--10481927	3	19.0	3	100	0	114	66	0	0	33	0.92
10482386--10482437	26	2.0	26	85	7	70	44	0	3	51	1.19
10482585--10482637	27	1.9	27	85	11	72	43	1	1	52	1.23
10485154--10485241	41	2.2	40	81	8	97	55	6	3	34	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10495979--10496070	44	2.1	44	89	0	139	38	5	13	43	1.66
10496290--10496325	18	2.1	18	89	5	56	38	0	0	61	0.96
10496283--10496329	24	2.0	24	84	12	62	40	0	0	59	0.97
10496289--10496361	15	4.9	15	72	9	60	43	0	0	56	0.99
10496307--10496364	26	2.1	28	84	6	75	41	0	0	58	0.98
10504040--10504086	10	4.8	10	76	5	51	53	2	0	44	1.12
10504040--10504084	19	2.3	20	92	3	74	55	2	0	42	1.12
10504042--10504127	19	4.7	18	72	16	70	59	1	1	38	1.13
10504079--10504135	9	6.6	9	74	6	55	66	0	1	31	1.02
10504337--10504395	18	3.3	18	79	9	59	54	8	1	35	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127