genome.fa.s656.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  16  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3801093--3801262	3	55.3	3	69	23	65	63	5	1	29	1.25
3801461--3801591	1	131.0	1	84	0	172	0	0	7	92	0.39
3801461--3801591	31	4.1	31	87	8	192	0	0	7	92	0.39
3801598--3802414	82	10.0	82	91	4	1253	37	22	17	22	1.94
3801598--3802414	41	20.0	40	89	7	1136	37	22	17	22	1.94
3803630--3803671	20	2.2	20	95	4	77	9	16	0	73	1.08
3803627--3803696	27	2.6	27	82	8	88	7	15	0	77	0.98
3803635--3803705	20	3.7	19	77	21	69	7	16	0	76	1.00
3803622--3803719	37	2.6	38	73	16	96	9	19	0	71	1.12
3807339--3807793	152	2.9	155	90	4	709	38	17	15	29	1.90
3807839--3807863	1	25.0	1	100	0	50	100	0	0	0	0.00
3808188--3808233	20	2.3	20	84	0	56	17	21	28	32	1.96
3808178--3808295	62	1.9	63	84	5	159	16	22	29	31	1.96
3808250--3808293	20	2.2	20	100	0	88	4	27	31	36	1.77
3808257--3808301	20	2.2	20	88	0	63	11	24	33	31	1.90
3808310--3808370	18	3.7	18	71	26	62	29	19	26	24	1.99
3808310--3808379	31	2.3	31	85	5	88	30	21	25	22	1.99
3808800--3808961	3	52.3	3	68	21	63	62	6	1	30	1.27
3811592--3811791	103	2.0	102	82	5	242	35	10	10	44	1.73
3811983--3812045	21	2.9	21	84	13	83	52	12	4	30	1.60
3811990--3812083	23	4.2	23	76	19	92	50	10	5	34	1.60
3812019--3812079	27	2.3	27	86	10	90	52	8	3	36	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3812153--3812185	3	11.0	3	100	0	66	66	0	0	33	0.92
3812653--3812684	16	2.0	16	93	0	55	78	18	3	0	0.89
3813299--3813397	6	16.7	6	74	10	62	59	6	3	31	1.37
3813300--3813344	19	2.5	18	89	7	65	64	8	0	26	1.23
3816311--3816351	17	2.6	16	88	7	57	48	2	7	41	1.44
3818466--3818510	18	2.4	19	85	3	65	26	4	11	57	1.52
3821204--3821273	1	70.0	1	73	0	59	4	8	0	87	0.67
3821222--3821273	8	6.6	8	87	8	72	0	11	0	88	0.52
3821204--3821273	15	4.4	16	78	10	72	4	8	0	87	0.67
3821204--3821273	24	2.9	24	81	14	81	4	8	0	87	0.67
3821234--3821291	27	2.1	27	81	6	64	0	13	6	79	0.93
3822865--3822897	12	2.8	12	95	0	57	69	3	0	27	1.03
3822945--3823334	196	2.0	197	92	4	653	36	11	14	37	1.83
3825581--3825870	145	2.0	145	99	0	571	34	21	21	22	1.97
3827759--3827818	17	3.5	17	76	2	57	15	5	1	78	1.00
3827768--3827797	13	2.2	14	94	5	53	0	6	3	90	0.56
3829279--3829334	19	3.2	19	78	12	57	26	3	16	53	1.59
3832064--3832091	2	14.0	2	100	0	56	50	0	0	50	1.00
3832091--3832123	2	16.5	2	100	0	66	51	0	48	0	1.00
3832197--3832254	16	3.7	16	79	2	73	48	1	8	41	1.44
3835511--3835596	45	1.9	45	82	0	109	32	19	26	20	1.97
3836085--3836129	21	2.1	21	91	0	72	53	2	28	15	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3837173--3837223	21	2.4	22	96	3	95	49	0	0	50	1.00
3845852--3845877	2	13.0	2	100	0	52	50	0	0	50	1.00
3851092--3851128	19	1.9	19	100	0	74	32	5	16	45	1.70
3851427--3851474	18	2.7	19	84	15	68	43	0	4	52	1.20
3852056--3852110	19	2.9	20	79	12	55	34	0	5	60	1.20
3852066--3852108	20	2.2	20	84	16	54	37	0	2	60	1.10
3857232--3857319	47	1.9	45	88	4	131	34	7	5	52	1.54
3859882--3859910	14	2.0	15	93	6	51	55	0	3	41	1.17
3860722--3860749	2	14.0	2	100	0	56	50	0	0	50	1.00
3871847--3871879	15	2.2	15	89	10	50	42	3	0	54	1.15
3877243--3877288	3	15.3	3	100	0	92	65	0	0	34	0.93
3877386--3877417	7	4.6	7	100	0	64	25	0	0	75	0.81
3877444--3877516	17	3.8	18	75	20	60	19	2	6	71	1.21
3880418--3880724	65	4.8	64	85	12	429	32	12	7	47	1.68
3880796--3880834	8	5.4	8	80	20	50	79	7	0	12	0.93
3880802--3880843	13	3.3	13	86	6	59	78	7	2	11	1.04
3881271--3881329	31	1.9	31	89	0	91	28	22	23	25	1.99
3882105--3882142	8	4.8	8	87	9	51	0	0	10	89	0.49
3882173--3882662	41	12.1	41	93	5	842	37	22	18	22	1.94
3882173--3882662	122	4.0	121	96	2	898	37	22	18	22	1.94
3882173--3882662	163	3.0	162	94	4	868	37	22	18	22	1.94
3883192--3883224	12	2.8	12	100	0	66	54	18	0	27	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3883902--3883949	19	2.7	18	83	6	62	6	10	0	83	0.81
3883919--3883959	9	4.6	9	82	14	50	2	9	0	87	0.62
3883918--3883959	18	2.3	18	91	4	66	2	9	0	88	0.61
3883928--3883968	18	2.3	18	86	0	55	4	12	0	82	0.81
3887768--3888231	60	7.7	56	85	12	572	33	13	8	44	1.73
3887768--3888247	119	4.0	121	88	6	667	33	13	8	45	1.72
3888304--3888335	13	2.5	13	95	5	57	78	6	0	15	0.95
3888301--3888344	21	2.1	21	91	0	70	77	6	2	13	1.07
3888769--3888827	31	1.9	31	86	6	84	28	22	22	27	1.99
3889160--3889235	38	1.9	39	81	5	91	59	5	7	27	1.47
3893716--3893757	20	2.0	23	86	13	63	28	2	16	52	1.56
3894642--3894708	31	2.1	32	91	8	111	70	0	20	8	1.14
3894690--3894735	20	2.3	20	84	0	56	69	0	26	4	1.07
3894701--3894752	17	2.8	19	85	8	63	71	0	23	5	1.07
3894732--3894771	11	3.3	12	86	10	55	82	0	12	5	0.82
3894739--3894774	13	2.7	13	86	4	54	88	0	8	2	0.59
3894722--3894774	17	3.4	17	70	26	53	83	0	13	3	0.79
3895988--3896078	43	2.2	40	84	7	112	39	6	15	38	1.73
3896378--3896648	41	6.6	41	83	6	323	23	18	12	44	1.84
3896622--3896672	24	2.1	24	100	0	102	23	13	11	50	1.74
3896581--3896713	65	2.0	65	94	0	230	22	18	12	45	1.83
3896540--3896754	106	2.0	106	93	0	367	22	19	13	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3896497--3896793	147	2.0	148	88	1	434	23	18	13	45	1.84
3896646--3896928	124	2.3	124	87	1	406	24	17	14	44	1.86
3896646--3896950	83	3.7	83	88	0	414	24	17	15	43	1.87
3896646--3896950	41	7.4	41	87	1	385	24	17	15	43	1.87
3897184--3897248	3	22.7	3	76	14	66	27	3	0	69	1.03
3897182--3897250	8	8.5	8	85	6	86	26	2	0	71	1.00
3897255--3897289	11	3.1	11	91	4	52	20	0	5	74	1.02
3897255--3897288	17	1.9	18	94	5	61	17	0	5	76	0.98
3897631--3897675	20	2.3	20	84	3	56	22	17	17	42	1.89
3898012--3898060	10	4.6	10	76	14	53	18	0	6	75	1.00
3898014--3898060	23	2.1	21	84	7	58	17	0	6	76	0.98
3898658--3898751	50	1.9	48	80	8	109	44	8	18	28	1.78
3899679--3899718	16	2.5	17	80	15	50	17	5	12	65	1.44
3901798--3901837	3	13.3	3	100	0	80	67	0	0	32	0.91
3902620--3902654	18	1.9	18	88	0	52	37	0	8	54	1.31
3908402--3908449	22	2.1	23	85	11	64	35	0	6	58	1.23
3916631--3916663	2	16.5	2	100	0	66	0	0	48	51	1.00
3919087--3919127	16	2.6	16	92	0	64	53	24	7	14	1.66
3919395--3919440	13	3.6	13	82	8	51	52	4	0	43	1.21
3919509--3919543	6	5.5	6	87	12	52	37	0	0	62	0.95
3919513--3919551	20	2.0	20	84	0	51	41	0	0	58	0.98
3923427--3923453	11	2.5	11	100	0	54	33	25	22	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3924116--3924175	27	2.2	27	90	0	93	38	3	11	46	1.57
3924125--3924176	27	1.9	27	100	0	104	34	3	13	48	1.61
3924124--3924183	27	2.2	27	90	0	102	38	5	11	45	1.63
3929774--3929799	2	13.0	2	100	0	52	50	0	0	50	1.00
3932497--3932568	29	2.4	32	77	13	80	41	5	4	48	1.45
3932502--3932565	29	2.2	30	85	2	85	40	4	4	50	1.44
3932516--3932598	30	2.8	30	80	10	91	46	4	3	44	1.42
3936640--3936676	19	2.0	18	89	5	56	40	2	5	51	1.39
3941369--3941403	17	2.1	17	89	10	54	34	11	17	37	1.85
3949295--3949388	29	3.1	29	81	10	91	64	4	1	29	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127