genome.fa.s656.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  49  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9732211--9732248	20	1.9	20	88	0	58	15	5	2	76	1.08
9740605--9740629	13	1.9	13	100	0	50	56	16	0	28	1.41
9741121--9741423	43	7.0	43	80	4	261	43	13	15	28	1.84
9741139--9741426	86	3.3	85	81	4	328	43	13	14	27	1.84
9741152--9741423	129	2.1	130	82	2	323	44	13	15	27	1.83
9741841--9741910	23	3.1	23	70	12	63	42	18	7	31	1.77
9741851--9741909	22	2.7	21	76	7	55	38	20	6	33	1.79
9742007--9742067	14	4.4	14	76	0	68	42	14	3	39	1.62
9742008--9742067	28	2.1	28	93	0	102	43	13	3	40	1.60
9743275--9743362	17	5.1	17	85	11	99	14	17	2	65	1.36
9743275--9743320	9	5.3	9	76	10	51	19	21	0	58	1.39
9743284--9743362	26	3.0	25	79	15	72	13	15	2	68	1.32
9743284--9743362	9	9.1	8	80	13	86	13	15	2	68	1.32
9746462--9746494	2	16.5	2	100	0	66	48	0	0	51	1.00
9749843--9749904	8	7.2	8	78	12	61	16	1	3	79	0.95
9753799--9753829	16	1.9	16	93	0	53	19	0	0	80	0.71
9754670--9754709	17	2.4	17	84	12	55	10	0	12	77	0.99
9760211--9760252	22	1.9	22	90	0	66	38	16	16	28	1.91
9763761--9763811	25	2.0	25	100	0	102	64	3	19	11	1.41
9778010--9778078	28	2.5	28	90	0	111	42	20	10	27	1.84
9787707--9787779	25	3.0	25	92	6	123	36	20	15	27	1.92
9795185--9795248	33	1.9	34	81	6	78	31	3	6	59	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9795228--9795264	18	2.0	20	89	10	60	18	2	2	75	1.04
9795697--9795739	18	2.4	18	84	7	52	30	4	2	62	1.28
9796611--9796663	15	3.4	16	73	23	51	3	5	7	83	0.92
9798055--9798090	19	1.9	19	94	5	65	11	0	5	83	0.80
9799110--9799195	5	17.2	5	70	12	52	54	6	0	38	1.27
9799153--9799212	3	21.3	3	73	13	56	63	5	0	31	1.16
9799153--9799205	8	6.3	9	79	14	51	62	5	0	32	1.19
9799107--9799212	14	7.8	14	73	10	69	56	6	0	36	1.25
9799960--9800185	86	2.6	84	80	5	265	36	15	19	27	1.93
9800123--9800180	17	3.4	17	73	2	53	34	20	18	25	1.96
9801236--9801303	23	2.9	24	77	14	70	8	10	4	76	1.14
9801349--9801380	9	3.6	9	95	0	55	6	3	0	90	0.53
9801786--9801811	8	3.2	8	100	0	52	11	0	0	88	0.52
9806290--9806330	21	2.0	20	90	4	64	19	9	0	70	1.14
9806329--9806477	3	49.3	3	71	14	92	58	6	0	34	1.29
9806329--9806474	25	5.5	26	66	14	66	58	6	0	34	1.30
9806424--9806477	11	4.8	12	80	11	60	64	3	0	31	1.11
9806433--9806472	17	2.4	17	95	0	71	62	5	0	32	1.17
9808192--9808218	13	2.1	13	100	0	54	55	0	0	44	0.99
9808384--9808418	16	2.2	16	89	0	52	57	0	0	42	0.99
9808742--9808822	38	2.1	38	93	4	137	41	11	6	40	1.65
9814323--9814474	43	3.5	44	72	12	145	30	7	14	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9814324--9814544	42	5.2	42	71	15	127	31	9	14	45	1.75
9814323--9814487	87	1.9	87	85	3	226	30	8	14	46	1.75
9814466--9814544	41	1.9	41	85	10	108	31	11	13	43	1.80
9815693--9815756	29	2.3	28	78	19	64	21	3	4	70	1.20
9816013--9816047	16	2.1	17	89	5	54	51	0	0	48	1.00
9818005--9818055	21	2.5	21	90	3	77	31	25	29	13	1.94
9819639--9819681	19	2.3	18	84	11	52	6	4	4	83	0.89
9824459--9824493	16	2.1	17	89	5	54	34	5	5	54	1.48
9824456--9824496	17	2.4	18	84	12	59	36	4	4	53	1.44
9825397--9825445	24	2.0	24	92	0	80	32	34	10	22	1.88
9827662--9827707	20	2.3	20	88	3	67	58	0	0	41	0.98
9833930--9833974	23	2.0	23	86	8	65	46	6	2	44	1.42
9834207--9834242	16	2.3	16	90	4	56	22	5	2	69	1.22
9833974--9834373	206	1.9	204	89	4	617	32	9	8	49	1.65
9834765--9834810	24	1.9	24	82	8	58	60	4	6	28	1.40
9842092--9842122	2	15.5	2	100	0	62	48	0	0	51	1.00
9842169--9842203	15	2.3	15	90	0	52	62	0	0	37	0.95
9842518--9842563	16	2.8	17	84	12	60	2	30	0	67	1.03
9842899--9842933	4	8.8	4	93	0	52	20	0	28	51	1.47
9842931--9842960	2	15.0	2	100	0	60	50	0	0	50	1.00
9844364--9844415	22	2.5	22	93	6	90	50	0	0	50	1.00
9856891--9856948	20	2.9	19	79	7	62	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9857841--9857933	39	2.4	39	79	12	104	51	0	3	45	1.17
9858387--9858434	17	2.8	17	80	0	51	39	4	2	54	1.32
9871038--9871091	25	2.2	24	83	3	63	35	12	25	25	1.92
9873029--9873118	27	3.3	26	83	6	108	18	4	42	34	1.71
9874960--9875008	25	2.0	25	91	0	80	32	14	26	26	1.94
9876760--9876825	33	2.0	33	93	0	114	31	19	19	28	1.97
9891084--9891124	21	2.0	21	85	0	55	39	9	7	43	1.65
9895060--9895116	19	2.8	20	78	7	53	28	1	14	56	1.48
9895021--9895284	128	2.1	128	97	0	501	28	3	16	51	1.59
9896870--9896914	18	2.4	19	85	10	58	17	4	4	73	1.17
9908956--9908980	13	1.9	13	100	0	50	28	0	0	72	0.86
9912555--9912626	37	1.9	37	88	0	108	30	11	9	48	1.71
9913578--9913616	20	1.9	21	89	5	62	51	20	10	17	1.74
9914390--9914534	44	3.3	44	76	3	143	40	8	15	35	1.78
9916152--9916198	22	2.1	22	96	0	85	40	14	4	40	1.66
9916797--9916853	27	2.0	29	90	6	91	40	21	0	38	1.53
9916912--9916963	22	2.4	22	83	6	61	40	19	1	38	1.63
9916930--9917028	22	4.5	22	76	7	74	45	15	5	34	1.68
9917471--9917495	12	2.1	12	100	0	50	52	40	0	8	1.31
9917467--9917511	16	2.8	16	82	0	63	51	31	0	17	1.46
9919179--9919207	15	2.0	15	93	6	51	62	0	0	37	0.96
9920341--9920428	43	2.1	41	83	8	106	76	2	7	13	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9923558--9923588	2	15.5	2	100	0	62	51	0	0	48	1.00
9927648--9927690	18	2.4	18	96	3	79	55	0	0	44	0.99
9927677--9927739	28	2.2	29	83	11	85	44	1	1	52	1.20
9940351--9940394	22	2.0	22	95	0	79	31	11	13	43	1.80
9940543--9940627	23	3.6	23	87	4	116	14	25	18	41	1.88
9944274--9944317	22	2.0	22	95	0	79	31	11	13	43	1.80
9945676--9945711	18	1.9	19	88	5	56	44	25	8	22	1.80
9954183--9954436	59	4.3	58	79	9	212	40	11	7	41	1.68
9954215--9954461	59	4.2	60	78	11	224	39	11	6	42	1.67
9954523--9954566	7	5.9	7	85	15	61	72	0	0	27	0.85
9955369--9955503	8	17.2	8	66	21	54	61	0	9	28	1.32
9955391--9955503	17	6.6	17	71	19	65	62	0	8	27	1.30
9955358--9955441	39	2.2	38	86	4	114	58	0	9	32	1.30
9955405--9955503	11	9.2	11	72	13	64	62	1	9	27	1.32
9955468--9955541	15	5.1	15	74	14	59	74	1	2	21	1.02
9955391--9955495	38	2.7	38	72	18	90	62	0	8	27	1.30
9955478--9955542	16	3.8	17	75	20	64	76	1	1	20	0.94
9955757--9955987	46	5.2	43	76	14	168	45	16	11	26	1.82
9955824--9955987	46	3.8	42	80	12	172	44	16	13	25	1.84
9955912--9956196	41	7.0	41	80	6	206	40	19	13	25	1.89
9956015--9956200	42	4.5	41	85	7	218	41	19	12	25	1.87
9956004--9956200	83	2.4	83	78	13	228	41	20	12	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9956481--9956574	43	2.2	44	83	11	122	36	17	10	36	1.84
9962011--9962166	57	2.7	59	84	5	196	38	12	6	42	1.68
9962183--9962242	5	11.8	5	76	16	54	80	1	3	15	0.93
9962183--9962226	6	7.3	6	82	7	54	81	0	2	15	0.78
9963120--9963254	8	17.2	8	66	21	54	61	0	9	28	1.32
9963111--9963192	39	2.2	38	86	4	112	57	0	9	32	1.32
9963142--9963254	17	6.6	17	71	19	65	62	0	8	27	1.30
9963156--9963254	11	9.2	11	72	13	64	62	1	9	27	1.32
9963219--9963253	15	2.3	15	90	0	52	68	0	5	25	1.11
9963142--9963246	38	2.7	38	72	18	90	62	0	8	27	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127