genome.fa.s656.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  29  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6065469--6065524	19	3.0	18	84	7	76	5	7	0	87	0.67
6065470--6065526	17	3.4	16	86	13	87	3	7	0	89	0.58
6065457--6065526	35	2.0	34	86	8	95	5	10	0	84	0.78
6075923--6076003	27	2.8	28	72	17	76	38	13	4	43	1.66
6075863--6076108	58	4.2	58	79	10	234	36	13	7	41	1.73
6075863--6076108	117	2.1	115	85	7	318	36	13	7	41	1.73
6076075--6076146	38	1.9	37	86	8	101	40	2	11	45	1.54
6076011--6076204	97	2.0	96	85	5	257	36	11	9	42	1.74
6076247--6076334	45	2.0	45	84	8	117	73	1	9	15	1.13
6076276--6076316	21	1.9	22	95	5	75	75	0	9	14	1.04
6076252--6076325	18	3.9	18	72	19	62	75	1	6	16	1.08
6076700--6076738	19	2.1	19	85	0	51	28	15	25	30	1.96
6077251--6077299	22	2.3	22	86	10	66	63	2	6	28	1.30
6077288--6077336	18	2.5	20	83	6	57	59	2	8	30	1.38
6077397--6077457	15	4.3	14	76	19	56	63	0	4	31	1.15
6077397--6077516	7	17.3	7	73	18	60	65	0	4	29	1.16
6077397--6077518	15	8.1	15	64	27	55	66	0	4	28	1.15
6077796--6077845	21	2.4	22	74	16	52	46	0	4	50	1.20
6078966--6079013	17	2.7	17	80	6	51	39	6	2	52	1.39
6079623--6079654	3	10.7	3	100	0	64	68	0	0	31	0.90
6088517--6088563	9	5.4	9	82	10	62	68	0	0	31	0.90
6088517--6088564	4	11.2	4	80	10	51	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6088949--6088985	19	1.9	19	94	0	65	48	16	10	24	1.77
6089661--6089799	41	3.4	40	78	10	131	40	15	17	26	1.90
6089742--6090008	41	6.5	41	79	4	270	41	22	13	23	1.89
6089743--6090008	83	3.3	82	81	6	297	41	22	13	23	1.88
6090285--6090389	43	2.4	44	77	15	110	32	16	13	38	1.87
6090574--6090632	22	2.7	21	86	5	73	33	20	8	37	1.83
6091764--6091850	31	2.9	29	80	10	93	9	20	0	70	1.15
6101363--6101396	17	2.0	17	88	0	50	61	0	11	26	1.30
6101941--6101980	20	2.1	20	86	9	57	27	5	7	60	1.45
6102000--6102081	24	3.4	25	74	19	75	34	1	8	56	1.38
6101983--6102121	47	3.0	47	86	5	167	35	2	8	53	1.47
6102103--6102164	32	1.9	32	93	0	106	29	6	11	53	1.61
6109950--6110106	52	3.0	52	80	5	174	25	24	8	42	1.82
6110131--6110172	11	3.8	11	93	0	75	52	30	0	16	1.44
6110385--6110461	25	3.2	25	77	3	86	22	36	9	32	1.85
6111017--6111163	52	2.8	52	86	2	188	25	24	8	41	1.82
6112145--6112174	9	3.4	9	90	9	53	0	20	0	80	0.72
6112144--6112174	8	3.8	8	91	8	53	0	22	0	77	0.77
6112607--6112650	17	2.6	17	85	3	54	81	6	4	6	0.97
6112808--6112850	20	2.2	20	86	0	59	23	6	9	60	1.51
6113176--6113224	6	9.0	5	89	10	62	18	6	0	75	1.00
6113176--6113270	6	16.2	6	75	14	56	20	3	4	72	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6113176--6113224	11	4.5	11	89	5	64	18	6	0	75	1.00
6113829--6113862	12	2.8	12	86	0	50	76	0	2	20	0.92
6114071--6114102	12	2.7	12	95	0	55	65	21	0	12	1.25
6114065--6114111	12	3.9	12	78	10	51	65	14	0	19	1.26
6114210--6114236	12	2.2	12	100	0	54	29	14	0	55	1.40
6117687--6117727	20	2.0	20	100	0	82	29	41	9	19	1.83
6119331--6119383	3	17.7	3	100	0	106	66	0	0	33	0.92
6122281--6122317	17	2.2	16	95	4	65	21	0	2	75	0.92
6125915--6125949	3	11.7	3	100	0	70	68	0	0	31	0.90
6126731--6126773	3	14.3	3	100	0	86	67	0	0	32	0.91
6130071--6130120	8	5.9	8	80	19	57	74	0	26	0	0.83
6130067--6130110	19	2.3	19	88	7	63	77	0	22	0	0.77
6130071--6130143	27	2.7	26	83	12	85	71	0	24	4	1.04
6130071--6130143	28	2.7	26	79	12	76	71	0	24	4	1.04
6131235--6131304	36	1.9	36	85	0	95	22	12	12	51	1.74
6131800--6132336	271	2.0	271	97	0	1011	30	32	12	23	1.92
6133879--6134131	127	2.0	127	92	3	429	43	6	10	39	1.65
6135517--6135557	13	3.0	13	80	13	55	46	0	0	53	1.00
6136362--6136572	115	1.8	115	94	0	377	40	12	11	34	1.80
6144525--6144570	21	2.1	22	88	11	69	58	0	8	32	1.28
6145797--6145884	43	2.0	43	95	0	158	54	12	6	26	1.62
6147821--6147857	17	2.2	17	100	0	74	45	10	0	43	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6161247--6161287	19	2.1	20	86	4	57	60	4	7	26	1.43
6164523--6164577	16	3.4	16	84	0	74	45	3	3	47	1.38
6164520--6164590	32	2.2	32	85	2	90	40	4	4	50	1.41
6165036--6165089	20	2.8	20	80	5	58	50	1	0	48	1.11
6165545--6165608	13	5.0	13	70	11	51	51	0	0	48	1.00
6165534--6165614	19	4.4	18	67	21	60	53	0	0	46	1.00
6165772--6165841	29	2.4	30	83	7	90	55	7	7	30	1.54
6168806--6168830	11	2.3	11	100	0	50	44	0	8	48	1.32
6168772--6168862	45	2.0	45	84	0	119	47	10	6	35	1.65
6169596--6169621	13	2.0	13	100	0	52	15	0	0	84	0.62
6175111--6175197	30	2.9	30	82	1	113	50	9	5	34	1.58
6175110--6175204	29	3.2	29	77	1	100	53	8	5	32	1.53
6175347--6175518	73	2.3	73	75	6	168	31	9	8	50	1.65
6175476--6175556	38	2.1	37	82	11	92	34	11	4	49	1.60
6175492--6175676	93	2.0	93	85	7	252	36	10	4	48	1.58
6175607--6175763	73	2.2	73	78	6	165	38	12	5	43	1.66
6176850--6176912	33	1.9	33	86	0	90	49	15	11	23	1.77
6177305--6177330	10	2.6	10	100	0	52	53	0	0	46	1.00
6177966--6178016	18	2.7	18	76	11	57	31	5	1	60	1.31
6178861--6178905	21	2.1	21	95	0	81	33	37	11	17	1.85
6179041--6179073	10	3.2	10	95	4	57	15	0	9	75	1.03
6179365--6179433	19	3.8	19	79	5	63	14	1	8	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6179386--6179458	30	2.7	26	78	16	67	21	1	6	69	1.19
6179383--6179442	30	1.9	32	90	6	97	21	0	6	71	1.08
6181491--6181566	31	2.5	30	76	17	84	43	11	1	43	1.49
6186273--6186302	11	2.6	12	89	10	53	66	6	0	26	1.16
6188864--6189198	171	2.0	169	94	2	591	27	23	14	35	1.93
6194176--6194237	2	31.5	2	83	3	81	41	1	3	53	1.27
6196235--6196277	21	2.0	21	90	0	68	51	0	2	46	1.13
6198644--6198677	12	2.8	12	86	0	50	44	2	0	52	1.16
6198672--6198707	19	2.0	17	89	10	54	52	2	0	44	1.15
6199008--6199046	18	2.0	20	85	9	55	51	10	2	35	1.50
6201874--6201898	12	2.1	12	100	0	50	32	0	0	68	0.90
6219775--6219837	26	2.5	26	97	2	119	28	4	11	55	1.55
6219913--6219943	16	1.9	16	93	0	53	32	0	0	67	0.91
6219914--6219956	18	2.3	19	92	4	70	32	0	0	67	0.91
6220717--6220781	22	2.6	26	74	23	75	52	0	1	46	1.10
6220836--6220865	16	1.9	16	93	6	53	66	0	6	26	1.16
6221677--6221710	11	3.0	11	87	8	50	70	0	0	29	0.87
6221672--6221709	20	2.0	20	89	5	60	71	0	0	28	0.87
6222022--6222070	24	2.0	24	88	7	73	44	0	2	53	1.12
6222050--6222083	17	1.9	18	88	5	52	47	0	0	52	1.00
6222055--6222093	19	2.1	19	85	0	51	48	0	0	51	1.00
6222368--6222442	33	2.3	34	95	4	136	57	10	0	32	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6222646--6222690	15	2.9	15	83	16	56	55	0	2	42	1.12
6229771--6229829	20	3.2	19	78	19	63	33	0	3	62	1.12
6229884--6229925	15	2.8	15	85	7	50	52	2	0	45	1.13
6229845--6229934	19	4.9	18	70	22	62	52	3	1	43	1.25
6229846--6229922	37	2.2	35	82	11	95	49	3	1	45	1.28
6229893--6229939	23	2.0	24	88	12	71	53	4	0	42	1.20
6230241--6230566	161	2.0	161	98	1	627	34	15	19	30	1.93
6230736--6230828	30	3.2	29	79	13	111	40	3	2	53	1.29
6233366--6233426	2	30.5	2	86	0	86	42	1	3	52	1.27
6235426--6235468	21	2.0	21	90	0	68	51	0	2	46	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127