genome.fa.s656.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  84  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16100578--16100677	51	2.0	51	88	4	148	28	10	20	42	1.84
16100640--16101103	170	2.7	171	86	4	609	29	15	18	37	1.91
16102116--16102181	24	2.8	24	88	0	105	33	4	7	54	1.49
16102305--16102391	22	4.0	22	75	10	81	27	4	11	56	1.54
16102166--16102362	55	3.6	55	81	4	238	28	5	10	55	1.55
16102297--16102414	20	5.8	20	75	12	87	33	4	8	53	1.51
16102471--16102509	19	2.1	19	85	0	51	28	2	15	53	1.55
16102477--16102539	24	2.6	24	82	7	83	30	3	14	52	1.57
16102661--16102716	18	3.1	18	78	12	53	37	5	7	50	1.53
16102810--16102841	16	2.1	16	88	11	50	25	6	15	53	1.65
16109584--16109615	14	2.3	15	89	10	50	15	0	21	62	1.32
16110105--16110130	3	8.7	3	100	0	52	69	0	0	30	0.89
16114242--16114281	14	2.7	15	88	3	64	35	0	0	65	0.93
16114242--16114289	15	2.8	18	76	23	59	37	0	0	62	0.95
16114273--16114345	26	3.1	22	73	17	65	41	2	0	56	1.14
16114278--16114310	14	2.3	15	89	5	50	39	0	0	60	0.97
16116595--16116659	34	1.9	34	93	0	112	27	15	9	47	1.76
16126068--16126423	143	2.5	142	76	7	353	31	15	14	39	1.87
16127713--16127850	18	7.8	17	76	15	104	44	37	4	13	1.64
16127719--16127836	35	3.4	35	80	9	125	43	38	3	14	1.62
16127719--16127834	52	2.2	51	79	13	128	43	39	3	13	1.61
16127818--16127904	26	3.4	26	76	9	90	43	39	2	14	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16127934--16128034	7	15.0	7	74	12	86	43	35	0	19	1.58
16127928--16128025	34	2.9	35	82	8	107	44	33	1	20	1.58
16127976--16128034	26	2.2	25	85	8	82	45	37	0	16	1.48
16127983--16128038	19	2.9	19	89	2	67	50	33	0	16	1.45
16127969--16128065	7	14.4	7	71	16	53	48	31	0	19	1.49
16128016--16128081	26	2.5	27	78	11	66	50	28	0	21	1.49
16129077--16129103	14	1.9	14	100	0	54	29	3	0	66	1.09
16130181--16130338	37	4.2	38	76	7	146	36	19	8	36	1.82
16130188--16130331	75	1.9	75	81	2	173	34	21	6	37	1.79
16133268--16133302	11	3.1	11	95	4	61	88	0	11	0	0.51
16133268--16133302	12	3.0	12	91	4	54	88	0	11	0	0.51
16137026--16137088	27	2.4	27	84	7	76	68	4	15	11	1.36
16139402--16139508	14	7.2	14	67	17	56	76	1	17	3	1.02
16139431--16139511	8	10.2	8	73	14	62	81	2	14	1	0.86
16139439--16139511	19	3.6	19	75	9	65	82	2	15	0	0.79
16139399--16139514	48	2.4	47	80	12	112	77	1	17	3	0.99
16141231--16141273	18	2.4	18	88	3	61	30	11	11	46	1.76
16141402--16141799	41	9.7	41	73	5	257	31	18	11	38	1.87
16141403--16141791	82	4.7	82	72	8	288	31	17	11	38	1.86
16141800--16141847	19	2.5	19	90	6	71	20	12	20	45	1.83
16141864--16142034	41	4.1	41	79	2	144	29	16	12	40	1.85
16141864--16141992	41	3.1	42	79	3	145	28	15	13	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16141892--16142086	42	4.7	41	80	3	149	29	18	10	41	1.84
16141931--16142085	84	1.9	83	80	2	186	30	17	10	40	1.84
16141981--16142099	42	2.9	42	83	3	134	33	18	10	36	1.86
16141931--16142099	83	2.0	83	79	4	180	31	16	13	39	1.87
16142166--16142212	24	1.9	24	86	4	67	82	4	6	6	0.92
16143245--16143304	22	2.5	25	81	13	81	43	0	1	55	1.10
16143985--16144022	19	2.0	19	94	0	67	55	0	10	34	1.34
16145022--16145059	19	2.0	19	89	0	58	44	2	10	42	1.52
16145023--16145066	19	2.3	19	84	0	52	45	6	9	38	1.63
16145126--16145323	22	9.0	22	74	5	132	47	8	7	36	1.60
16145603--16145698	22	4.4	21	73	8	84	55	5	7	32	1.50
16145649--16145696	11	4.4	11	78	0	51	54	2	8	35	1.42
16145577--16145698	44	2.7	43	78	7	127	54	4	8	31	1.51
16146082--16146233	21	7.2	21	73	14	100	50	7	7	34	1.59
16146183--16146233	10	4.9	10	75	17	50	49	7	5	37	1.56
16153057--16153095	20	2.0	20	94	0	69	20	2	23	53	1.57
16153302--16153370	22	3.2	21	76	13	70	68	2	5	23	1.25
16153320--16153386	23	3.0	23	82	6	66	68	2	8	19	1.29
16156686--16156724	14	3.0	13	85	7	53	69	12	0	17	1.19
16158247--16158303	25	2.2	26	90	3	89	54	14	8	22	1.67
16158890--16158916	9	3.0	9	100	0	54	11	0	55	33	1.35
16159053--16159219	62	2.8	61	84	6	198	46	10	5	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16165557--16165590	16	2.1	16	94	0	59	55	5	8	29	1.54
16171324--16171597	135	2.0	135	90	1	433	47	17	10	24	1.78
16173926--16173979	16	3.3	15	73	16	54	35	3	11	50	1.56
16178206--16179147	234	4.0	232	75	7	779	50	6	11	31	1.63
16178219--16179164	470	2.0	465	78	6	982	51	6	11	31	1.62
16178860--16179706	452	1.9	451	80	3	997	50	6	11	31	1.63
16179299--16179987	235	2.9	229	79	9	681	52	6	9	31	1.60
16182997--16183088	30	3.1	30	81	9	98	35	18	4	41	1.70
16185423--16185471	25	2.0	24	88	7	73	75	6	2	16	1.09
16185867--16185907	17	2.4	17	83	0	55	36	0	2	60	1.10
16186973--16187004	2	17.0	2	87	12	50	46	0	0	53	1.00
16186973--16187003	9	3.6	9	91	8	55	45	0	0	54	0.99
16187427--16187498	37	1.9	37	86	5	101	20	22	20	36	1.96
16188257--16188282	2	13.0	2	100	0	52	50	0	0	50	1.00
16188964--16189327	159	2.3	159	78	4	360	28	13	11	46	1.78
16189230--16189366	55	2.5	55	87	1	204	27	9	13	49	1.73
16189466--16189512	24	2.0	24	83	8	60	42	2	0	55	1.12
16189651--16189680	15	2.0	15	93	0	51	60	16	6	16	1.56
16203562--16203586	12	2.1	12	100	0	50	60	0	0	40	0.97
16203559--16203627	28	2.5	29	77	13	74	50	0	1	47	1.09
16206176--16206200	7	3.6	7	100	0	50	12	0	0	88	0.53
16208724--16208850	62	2.0	62	83	3	157	14	12	18	55	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16210059--16210089	16	2.0	16	93	6	55	32	3	0	64	1.09
16211275--16211324	26	2.0	25	88	4	73	46	10	12	32	1.74
16211799--16211837	10	3.5	11	86	10	53	56	2	0	41	1.13
16211800--16211838	14	2.8	13	88	11	51	56	2	0	41	1.13
16213524--16213562	20	2.0	20	85	9	55	33	0	0	66	0.92
16213842--16214176	127	2.6	129	80	3	365	42	8	4	44	1.56
16215798--16215852	26	2.1	26	86	6	76	54	0	0	45	0.99
16215791--16215853	18	3.4	18	74	26	60	53	0	0	46	1.00
16224720--16225612	356	2.5	356	85	2	1143	35	15	12	36	1.85
16230411--16230479	36	1.9	36	85	2	95	36	17	13	33	1.88
16231842--16231985	74	1.9	75	83	4	184	46	3	11	38	1.58
16232250--16232291	22	2.0	22	90	4	68	26	4	4	64	1.33
16232419--16232478	31	1.9	31	86	0	84	35	6	13	45	1.70
16233936--16233967	12	2.4	14	90	10	50	62	6	0	31	1.20
16238228--16238309	35	2.3	35	83	4	94	37	17	13	31	1.88
16238289--16238344	28	2.0	28	93	3	96	41	16	10	32	1.82
16238634--16238734	48	2.1	48	87	7	143	23	13	19	42	1.87
16238568--16239113	147	3.7	146	84	3	648	23	12	20	43	1.86
16239049--16239203	76	2.0	76	83	2	195	25	14	18	41	1.88
16239168--16239309	66	2.2	66	85	5	189	26	8	21	44	1.80
16239367--16239452	33	2.6	34	87	5	131	23	18	18	39	1.92
16239688--16239948	50	5.3	49	83	5	271	29	13	19	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16239730--16239948	50	4.4	50	84	4	273	29	12	20	37	1.89
16240174--16240233	28	2.1	28	84	0	75	26	25	18	30	1.98
16240275--16240322	16	3.5	13	81	15	53	83	8	4	4	0.90
16258976--16260459	186	7.9	186	81	4	1436	33	14	12	40	1.82
16258977--16260358	562	2.5	561	85	3	1837	33	14	12	39	1.83
16261016--16261070	28	2.0	28	88	0	83	20	3	29	47	1.67
16264537--16264734	63	3.2	61	73	10	159	37	14	13	34	1.84
16264467--16264735	125	2.1	126	79	5	276	38	14	12	35	1.83
16268745--16268786	19	2.3	18	88	12	59	14	7	4	73	1.21
16271489--16271515	10	2.7	10	100	0	54	62	22	7	7	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127