genome.fa.s656.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  5  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
923121--923147	2	13.5	2	100	0	54	51	0	0	48	1.00
933298--933341	15	2.9	15	80	10	54	59	2	0	38	1.10
940127--940209	40	2.0	41	97	2	159	43	2	12	42	1.55
941121--941174	3	18.0	3	92	0	90	62	3	0	33	1.12
943491--943517	12	2.2	12	100	0	54	22	22	7	48	1.75
951683--951742	30	2.0	31	93	3	104	36	25	21	16	1.94
952830--952880	10	5.1	10	73	17	52	43	0	0	56	0.99
952826--952880	20	2.8	20	100	0	110	45	0	0	54	0.99
958394--958425	16	2.0	16	93	0	55	65	6	6	21	1.38
958628--958671	2	22.0	2	90	0	70	50	2	0	47	1.13
958628--958683	10	5.6	10	84	0	58	51	1	1	44	1.22
958928--958976	23	2.0	25	84	7	66	51	2	2	44	1.24
966424--966455	11	3.1	11	86	13	50	25	0	0	75	0.81
967137--967169	16	2.0	17	88	5	50	66	0	3	30	1.06
968517--968544	2	14.0	2	100	0	56	50	0	0	50	1.00
969353--969385	16	2.0	17	94	5	59	66	0	0	33	0.92
977976--978055	21	3.8	21	72	6	63	28	37	7	26	1.83
977976--978077	30	3.3	30	93	4	159	27	37	8	26	1.86
977968--978050	42	2.0	42	82	0	103	27	38	8	25	1.85
977959--978058	51	2.0	51	84	4	130	27	37	10	26	1.88
978018--978058	21	2.0	21	90	0	64	29	39	9	21	1.86
978663--978738	12	6.9	11	69	19	52	38	32	1	27	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
978660--978714	24	2.3	24	87	6	76	36	34	0	29	1.58
978675--978727	24	2.2	24	89	0	79	35	35	1	26	1.68
981210--981260	27	2.0	25	84	7	66	70	5	1	21	1.18
983353--983381	6	4.8	6	100	0	58	31	34	17	17	1.93
990136--990174	20	2.0	20	89	0	60	58	0	5	35	1.20
990491--990522	7	4.4	7	96	4	55	59	0	0	40	0.97
990491--990527	14	2.5	15	86	13	58	59	0	0	40	0.97
990580--990656	32	2.5	32	83	10	97	51	0	2	45	1.14
990660--990696	3	12.3	3	94	0	65	62	0	2	35	1.10
992062--992093	16	1.9	17	93	6	57	53	3	0	43	1.16
992234--992273	10	4.1	10	83	6	55	65	0	0	35	0.93
992236--992274	19	2.0	20	90	5	62	69	0	0	30	0.89
998174--998200	3	9.0	3	100	0	54	33	33	33	0	1.58
1002576--1002618	22	2.0	22	90	0	68	46	13	4	34	1.65
1002888--1002941	2	27.0	2	80	0	54	42	5	0	51	1.25
1003593--1003639	5	8.8	5	86	9	58	23	0	0	76	0.78
1003592--1003639	16	2.9	16	84	6	69	22	0	0	77	0.78
1004522--1004567	8	5.8	8	78	16	51	30	0	0	69	0.89
1004843--1004965	61	2.0	61	91	0	201	28	24	13	33	1.94
1005290--1005322	2	16.5	2	100	0	66	51	0	0	48	1.00
1007256--1007305	23	2.2	23	96	0	91	40	18	16	26	1.90
1007314--1007356	12	3.5	12	84	6	59	41	6	4	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010234--1010297	33	2.0	32	81	3	74	43	1	3	51	1.26
1015451--1015678	121	1.9	122	90	0	368	30	8	17	43	1.79
1020193--1020221	3	9.7	3	100	0	58	31	0	0	68	0.89
1043125--1043152	14	2.0	14	100	0	56	28	21	14	35	1.92
1048104--1048163	23	2.7	22	77	10	59	56	0	0	43	0.99
1048413--1048512	32	3.3	30	77	10	89	46	2	1	51	1.19
1048405--1048487	32	2.7	32	81	7	91	46	3	1	48	1.27
1055704--1055737	2	17.5	2	87	6	52	55	0	0	44	0.99
1069591--1069630	16	2.5	16	100	0	80	60	40	0	0	0.97
1069685--1069805	59	2.1	59	100	0	242	31	38	8	22	1.84
1069919--1070075	52	3.0	52	86	3	201	26	24	8	41	1.83
1074345--1074388	23	1.9	23	81	9	54	54	0	0	45	0.99
1074346--1074396	17	3.0	18	75	8	54	58	0	0	41	0.98
1082761--1082819	29	2.0	30	83	9	77	38	0	0	61	0.96
1084767--1084824	3	19.0	3	89	3	89	63	1	1	32	1.14
1106030--1106071	16	2.7	15	85	7	57	59	0	0	40	0.97
1108588--1108635	23	2.1	23	88	3	71	52	8	0	39	1.32
1108577--1108630	17	3.2	17	76	7	58	50	5	0	44	1.25
1109299--1109341	19	2.4	18	85	14	54	34	0	0	65	0.93
1119572--1119662	45	2.0	45	97	0	173	37	17	25	19	1.94
1121681--1121705	11	2.3	11	100	0	50	0	16	68	16	1.22
1121774--1121837	30	2.1	30	82	5	76	40	1	1	56	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1130032--1130078	24	1.9	25	83	12	62	25	25	4	44	1.72
1131557--1131617	30	2.0	30	90	0	95	39	6	29	24	1.80
1139667--1139695	15	1.9	15	100	0	58	27	6	27	37	1.82
1145442--1145478	18	2.0	19	94	5	67	48	16	0	35	1.46
1147364--1147400	2	18.5	2	100	0	74	51	0	0	48	1.00
1161989--1162113	62	2.0	62	100	0	250	17	28	20	33	1.96
1171474--1171507	17	2.0	17	88	11	52	70	0	0	29	0.87
1175120--1175349	114	2.0	114	94	0	406	33	10	6	49	1.62
1175399--1175437	19	2.1	19	85	0	51	46	2	0	51	1.14
1176633--1176670	19	2.0	20	90	10	62	42	0	0	57	0.98
1177579--1177900	177	1.8	172	86	3	464	22	6	18	52	1.67
1181814--1181838	13	1.9	13	100	0	50	56	0	8	36	1.29
1182643--1182681	12	3.2	12	88	3	51	15	10	15	58	1.62
1184145--1184195	15	3.3	15	83	2	57	27	1	1	68	1.11
1192834--1192874	20	2.0	22	85	9	59	36	21	12	29	1.90
1207819--1207857	19	2.1	19	85	9	53	0	15	2	82	0.79
1221217--1221243	12	2.2	12	100	0	54	7	33	0	59	1.25
1223999--1224038	15	2.7	14	85	11	53	32	0	2	65	1.06
1230211--1230247	17	2.1	18	85	14	51	54	0	2	43	1.14
1232525--1232582	11	4.9	12	72	17	50	65	1	1	31	1.13
1232685--1232740	18	3.3	18	75	14	64	60	0	0	39	0.97
1235049--1235076	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1249440--1249473	18	1.9	18	88	5	52	50	2	23	23	1.63
1251413--1251452	20	1.9	21	90	10	64	50	0	0	50	1.00
1254073--1254107	12	3.0	12	87	4	54	0	25	0	74	0.82
1267492--1267544	24	2.2	24	93	0	88	24	43	13	18	1.86
1281368--1281482	41	3.1	36	77	16	117	36	1	5	56	1.32
1282135--1282226	46	2.0	46	97	0	175	30	16	19	33	1.94
1282478--1282525	15	3.1	16	73	8	55	43	0	2	54	1.12
1282476--1282550	30	2.5	31	86	8	109	46	1	1	50	1.18
1282493--1282568	30	2.6	30	80	2	82	48	1	1	48	1.18
1285553--1285887	187	1.8	182	88	3	517	36	11	10	41	1.76
1293603--1293651	20	2.5	20	86	0	62	6	34	10	48	1.62
1309597--1309809	109	2.0	108	92	0	354	35	15	21	28	1.93
1316924--1317005	38	2.2	38	97	0	155	37	6	17	39	1.74
1320096--1320195	34	2.9	35	77	12	109	48	6	4	42	1.46
1329339--1329384	23	2.0	23	91	0	74	17	10	10	60	1.57
1336119--1336226	53	2.0	53	100	0	216	50	7	21	20	1.72
1354245--1354272	1	28.0	1	100	0	56	0	0	0	100	0.00
1358251--1358278	2	14.0	2	100	0	56	50	0	0	50	1.00
1365202--1365252	19	2.7	19	81	0	66	33	3	11	50	1.57
1367699--1367725	12	2.2	12	100	0	54	85	0	0	14	0.61
1368388--1368416	13	2.1	14	93	6	51	37	0	0	62	0.96
1370502--1370594	24	3.8	23	75	13	71	39	3	2	54	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1370607--1370660	22	2.4	24	81	12	69	42	0	1	55	1.10
1371059--1371091	2	16.5	2	93	0	57	48	0	3	48	1.17
1371099--1371124	2	13.0	2	100	0	52	50	0	50	0	1.00
1373210--1373276	33	2.0	33	94	0	116	38	13	19	28	1.89
1374318--1374361	22	2.0	22	100	0	88	36	22	4	36	1.75
1377822--1377846	6	4.2	6	100	0	50	68	32	0	0	0.90
1381147--1381176	14	2.1	14	93	0	51	90	0	10	0	0.47
1382073--1382101	14	2.0	15	93	6	51	44	0	0	55	0.99
1384387--1384416	14	2.2	13	94	5	51	43	0	6	50	1.28
1407947--1407998	23	2.4	21	81	9	68	50	3	0	46	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127