genome.fa.s656.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  31  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6472862--6473769	457	2.0	457	96	0	1672	25	14	20	39	1.91
6477338--6477381	23	2.0	22	90	4	70	77	0	9	13	0.99
6477904--6477946	18	2.3	18	81	14	52	81	2	9	6	0.95
6477917--6477962	25	1.9	24	82	8	58	78	4	8	8	1.09
6477904--6477968	21	3.2	20	77	18	71	78	3	10	7	1.06
6477901--6477978	38	2.1	38	82	4	95	76	2	12	7	1.09
6483828--6483875	19	2.4	19	86	6	60	64	0	0	35	0.94
6483959--6484005	19	2.6	18	73	6	51	70	4	4	21	1.22
6484888--6484915	13	2.2	13	100	0	56	78	7	0	14	0.95
6485920--6485982	29	2.3	27	88	5	90	52	0	0	47	1.00
6487290--6487324	16	2.2	16	94	0	61	37	22	14	25	1.92
6494131--6494177	20	2.3	21	78	10	53	46	12	2	38	1.54
6494142--6494188	25	1.9	24	91	4	76	46	12	4	36	1.62
6494250--6494320	20	3.6	20	83	11	101	53	8	2	35	1.46
6494235--6494351	39	2.8	41	79	11	121	53	11	4	30	1.55
6494411--6494452	20	2.1	20	86	0	57	54	7	4	33	1.49
6494431--6494525	24	4.0	24	75	17	108	53	9	4	32	1.52
6494505--6494568	17	3.7	16	76	14	56	48	12	9	29	1.72
6494531--6494568	20	2.0	18	90	10	58	47	10	7	34	1.67
6495052--6495096	3	15.7	3	84	9	58	31	2	2	64	1.18
6495153--6495188	3	12.0	3	93	0	63	33	0	2	63	1.08
6495140--6495183	18	2.4	19	81	11	56	36	2	4	56	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6495194--6495232	16	2.4	16	91	8	62	0	12	2	84	0.72
6495586--6495636	21	2.5	21	84	9	61	43	5	25	25	1.77
6495985--6496031	18	2.6	18	87	9	69	17	0	2	80	0.80
6496939--6497168	115	2.0	115	95	1	417	26	11	5	56	1.55
6499571--6499611	11	3.2	13	80	20	50	75	0	0	24	0.80
6501755--6501821	30	2.3	27	82	14	80	43	1	4	50	1.31
6509991--6510015	1	25.0	1	100	0	50	0	0	0	100	0.00
6510898--6510925	1	28.0	1	100	0	56	0	0	0	100	0.00
6513605--6513640	7	5.3	7	90	3	56	27	16	16	38	1.90
6513918--6513947	13	2.4	13	94	5	53	60	0	0	40	0.97
6514073--6514115	22	2.0	22	86	9	61	72	0	9	18	1.11
6514187--6514254	27	2.4	28	74	13	68	70	1	2	25	1.09
6515536--6515565	15	2.1	15	93	6	53	76	6	0	16	0.99
6516148--6516182	17	2.0	18	88	5	54	37	2	0	60	1.12
6516557--6516619	29	2.2	29	86	5	85	52	1	0	46	1.10
6521271--6522210	462	2.0	462	96	0	1747	25	17	17	38	1.92
6527380--6527404	13	1.9	13	100	0	50	4	8	0	88	0.64
6532454--6532480	2	13.5	2	100	0	54	51	0	0	48	1.00
6534388--6534414	6	4.5	6	100	0	54	85	0	14	0	0.61
6534392--6534443	20	2.5	20	81	3	59	80	0	13	5	0.88
6535104--6535157	23	2.4	23	81	9	58	29	3	3	62	1.29
6537317--6537351	9	3.9	9	84	0	52	48	2	8	40	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6538252--6538300	26	1.9	25	87	4	71	53	2	0	44	1.12
6538529--6538558	15	2.0	15	93	0	51	40	30	0	30	1.57
6543454--6543503	26	1.9	26	95	0	91	24	14	24	38	1.92
6544150--6544184	6	5.7	6	86	6	52	68	2	0	28	1.04
6544150--6544184	13	2.8	12	87	8	52	68	2	0	28	1.04
6550038--6550073	4	9.0	4	93	0	54	75	5	0	19	1.00
6551200--6551631	107	4.2	101	82	8	446	38	8	8	44	1.66
6551738--6551778	16	2.6	15	81	11	55	68	0	4	26	1.10
6552278--6552320	15	2.9	15	79	6	52	16	2	16	65	1.38
6552473--6552561	12	7.2	12	67	9	54	61	10	3	24	1.43
6552475--6552531	17	3.2	17	79	13	60	63	8	1	26	1.34
6552480--6552520	20	2.1	20	90	4	66	63	9	2	24	1.37
6552475--6552561	37	2.4	36	81	11	97	62	9	3	25	1.41
6552865--6552901	2	18.5	2	100	0	74	48	0	0	51	1.00
6553046--6553124	27	3.2	23	70	21	61	15	15	2	67	1.35
6553921--6553950	2	15.0	2	100	0	60	50	0	0	50	1.00
6554456--6554481	2	13.0	2	100	0	52	50	0	0	50	1.00
6555227--6555260	2	17.5	2	87	6	52	55	0	44	0	0.99
6561592--6561634	16	2.7	16	79	13	52	44	2	0	53	1.13
6565357--6565388	16	2.0	16	100	0	64	31	12	37	18	1.88
6566474--6566501	1	28.0	1	100	0	56	100	0	0	0	0.00
6567001--6567091	46	2.0	47	88	2	139	42	9	8	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6567048--6567208	79	2.0	79	92	0	268	44	11	5	37	1.65
6569819--6569859	11	3.8	11	83	6	57	73	0	0	26	0.84
6575557--6575643	35	2.5	35	88	0	138	34	9	13	42	1.77
6575557--6575671	35	3.4	34	81	4	117	33	10	14	40	1.80
6576071--6576209	42	3.4	41	74	14	126	26	7	20	44	1.79
6576252--6576462	48	4.4	47	68	20	114	24	11	20	43	1.85
6576195--6576418	105	2.1	105	87	4	319	22	12	21	43	1.86
6576339--6576439	48	2.1	48	87	5	143	25	12	18	42	1.86
6576113--6576565	251	1.8	243	83	4	593	23	12	20	42	1.87
6576294--6576607	146	2.1	147	89	0	468	24	14	21	40	1.89
6576545--6576732	42	4.5	42	83	6	220	26	11	20	42	1.85
6576537--6576734	83	2.4	83	84	2	263	25	11	19	43	1.84
6576712--6576924	105	2.0	105	85	3	286	22	14	20	42	1.88
6576864--6576986	42	2.8	42	70	16	95	26	8	19	46	1.77
6576822--6577187	147	2.5	147	79	8	413	24	12	20	41	1.87
6577265--6577392	51	2.6	49	83	10	170	29	9	21	39	1.84
6577264--6577460	100	2.0	100	84	4	263	29	10	21	38	1.86
6577280--6577471	51	3.8	50	77	10	176	28	11	21	38	1.88
6577280--6577502	51	4.4	49	75	11	164	28	12	20	38	1.89
6577730--6577778	21	2.3	21	86	6	64	57	0	2	40	1.10
6577730--6577781	24	2.3	21	84	15	61	57	0	1	40	1.10
6577859--6577960	39	2.7	38	90	1	159	17	42	10	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6578658--6578691	16	2.1	16	88	0	50	26	23	26	23	2.00
6579081--6579124	19	2.5	17	80	16	54	43	0	2	54	1.12
6582317--6582379	22	2.9	21	83	6	72	47	1	0	50	1.10
6582370--6582421	11	4.7	11	74	9	52	50	13	0	36	1.42
6582332--6582421	33	2.8	33	85	6	114	45	8	0	45	1.34
6589977--6590020	2	22.5	2	86	4	54	45	4	0	50	1.22
6589964--6590022	23	2.6	23	78	2	66	45	3	1	49	1.28
6590959--6590989	14	2.2	14	100	0	62	29	0	0	70	0.87
6592180--6592411	115	2.0	115	94	0	410	40	12	14	32	1.84
6596793--6596840	19	2.6	18	83	6	60	27	0	2	70	0.98
6596791--6596880	36	2.6	34	81	8	85	35	2	2	60	1.22
6601021--6601060	7	5.7	7	87	0	53	80	0	2	17	0.83
6601022--6601060	14	2.7	14	96	4	69	79	0	2	17	0.84
6601021--6601060	21	1.9	21	89	0	62	80	0	2	17	0.83
6605497--6605561	22	3.1	22	72	18	75	35	13	4	46	1.64
6606341--6606432	31	2.8	33	82	15	111	55	2	4	38	1.32
6611764--6611800	15	2.5	15	90	0	56	18	37	16	27	1.92
6624789--6624823	18	1.9	18	88	0	52	60	2	11	25	1.45
6630028--6630081	21	2.6	20	80	11	56	48	5	0	46	1.25
6633162--6633187	3	8.7	3	100	0	52	34	30	34	0	1.58
6633159--6633200	9	4.7	9	87	0	57	33	23	35	7	1.82
6636876--6636907	15	2.1	15	100	0	64	62	6	6	25	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6643801--6643946	11	13.7	10	68	19	66	38	0	2	59	1.09
6643808--6643935	23	5.1	23	74	19	105	39	0	2	58	1.11
6643836--6643958	13	8.6	16	73	17	85	43	0	1	55	1.09
6643819--6643917	13	7.7	13	73	17	82	41	0	3	55	1.15
6643805--6643948	54	2.7	54	79	16	158	39	0	2	58	1.10
6643836--6643919	28	2.9	29	80	18	104	41	0	2	55	1.12
6643926--6644008	42	2.0	42	81	13	100	50	3	2	43	1.32
6644056--6644104	22	2.3	21	83	10	64	32	8	4	55	1.48
6644558--6644593	10	3.3	11	88	11	56	63	8	0	27	1.23
6657135--6657194	28	2.1	28	100	0	120	33	6	10	50	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127