genome.fa.s656.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  32  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6659592--6659656	30	2.1	31	88	2	96	35	9	20	35	1.84
6660026--6660149	61	2.0	61	81	6	144	27	16	12	42	1.85
6665554--6665582	11	2.7	11	94	5	51	31	0	0	68	0.89
6666281--6666379	41	2.3	40	80	10	108	46	2	1	50	1.19
6666523--6666590	21	3.4	21	71	21	65	47	4	0	48	1.22
6666513--6666597	38	2.2	39	83	10	111	49	4	1	44	1.30
6666535--6666577	17	2.7	16	86	10	61	48	2	0	48	1.14
6666540--6666642	43	2.5	42	80	11	108	48	3	1	45	1.32
6666559--6666642	43	2.0	43	83	6	109	48	3	2	45	1.32
6666736--6666799	26	2.5	26	80	9	78	48	3	1	46	1.27
6666911--6666938	14	2.0	14	100	0	56	50	7	0	42	1.30
6667640--6667668	14	2.1	14	100	0	58	55	6	0	37	1.27
6668001--6668047	24	2.0	23	83	4	58	34	12	2	51	1.52
6668061--6668093	13	2.6	13	90	4	50	63	15	6	15	1.49
6672670--6672734	30	2.1	31	91	2	105	32	7	23	36	1.83
6681244--6681724	60	8.0	59	82	5	502	45	5	11	37	1.62
6681535--6681573	15	2.4	17	83	12	55	48	5	0	46	1.24
6681244--6681672	179	2.4	177	85	6	551	46	5	11	36	1.62
6681244--6681722	119	4.0	118	81	8	531	45	5	11	37	1.62
6682794--6682822	11	2.7	11	94	5	51	31	0	0	68	0.89
6683508--6683604	41	2.4	41	85	1	124	49	2	1	47	1.20
6683521--6683631	38	2.8	38	81	9	116	45	1	0	52	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6683743--6683826	38	2.2	39	80	8	100	50	7	1	41	1.37
6683764--6683805	17	2.6	16	85	10	59	50	2	0	47	1.14
6683821--6683858	20	1.9	19	89	5	58	52	2	5	39	1.38
6683905--6683953	19	2.5	20	77	9	57	42	4	0	53	1.20
6683883--6684004	16	7.2	16	69	20	52	45	3	1	49	1.28
6683976--6684039	26	2.5	26	80	9	78	48	3	1	46	1.27
6684874--6684902	14	2.1	14	100	0	58	55	6	0	37	1.27
6685169--6685199	15	2.1	15	93	0	53	45	0	3	51	1.17
6685302--6685334	13	2.6	13	90	4	50	66	15	3	15	1.37
6689984--6690048	30	2.1	31	91	2	105	32	7	23	36	1.83
6698852--6698984	58	2.2	60	90	6	207	42	7	9	41	1.65
6700055--6700094	22	1.9	22	90	10	66	35	0	0	65	0.93
6700778--6700874	41	2.4	41	85	1	124	49	2	1	47	1.20
6700791--6700901	38	2.8	38	81	9	116	45	1	0	52	1.17
6701013--6701097	38	2.2	39	81	10	102	49	7	1	42	1.37
6701035--6701076	17	2.6	16	85	10	59	50	2	0	47	1.14
6701092--6701129	20	1.9	19	89	5	58	52	2	5	39	1.38
6701176--6701224	19	2.5	20	77	9	57	42	4	0	53	1.20
6701154--6701275	16	7.2	16	69	20	52	45	3	1	49	1.28
6701247--6701310	26	2.5	26	80	9	78	48	3	1	46	1.27
6702147--6702175	14	2.1	14	100	0	58	55	6	0	37	1.27
6702439--6702469	15	2.1	15	93	0	53	45	0	3	51	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6702572--6702604	13	2.6	13	90	4	50	66	15	3	15	1.37
6706966--6706996	2	15.5	2	100	0	62	51	0	0	48	1.00
6709175--6709218	21	2.0	22	86	4	63	65	2	0	31	1.05
6710651--6710690	20	2.0	21	86	13	59	55	0	0	45	0.99
6711618--6711655	4	9.8	4	82	5	51	71	5	0	23	1.07
6713429--6713470	18	2.3	18	84	8	50	30	2	0	66	1.04
6713805--6714258	163	2.8	161	81	5	484	38	14	12	33	1.84
6716136--6716184	14	3.6	15	79	20	54	4	14	0	81	0.83
6716137--6716213	17	4.5	17	72	16	70	3	16	0	79	0.88
6716121--6716195	26	3.0	24	81	13	71	4	16	1	78	0.96
6716137--6716217	26	3.2	25	75	16	76	3	16	0	80	0.85
6716121--6716216	25	4.0	22	75	19	77	3	17	1	78	0.95
6716126--6716217	12	7.6	11	72	21	60	3	17	0	79	0.86
6719525--6719552	3	9.3	3	100	0	56	67	0	0	32	0.91
6725081--6725166	28	2.9	30	80	14	99	54	0	6	38	1.27
6726058--6726091	10	3.3	10	87	4	50	26	0	2	70	1.01
6726080--6726153	37	2.0	37	86	5	105	44	0	5	50	1.25
6726290--6726323	15	2.2	16	89	5	52	50	5	0	44	1.26
6727688--6727726	20	1.9	20	84	5	51	35	2	0	61	1.10
6728356--6728411	17	3.5	17	71	11	55	44	1	1	51	1.22
6738154--6738186	15	2.1	16	88	5	50	6	9	9	75	1.18
6738447--6738503	10	6.1	10	68	15	50	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6740779--6740986	83	2.5	83	86	6	287	32	18	13	35	1.90
6741215--6741295	22	3.6	22	73	3	63	24	17	25	32	1.97
6741536--6741567	15	2.3	15	89	10	50	3	12	3	81	0.93
6754524--6754578	24	2.3	24	90	0	83	50	0	7	41	1.30
6754560--6754616	14	3.9	15	72	6	55	56	0	1	42	1.10
6754571--6754616	14	3.3	13	82	14	56	58	0	0	41	0.98
6754900--6754924	13	1.9	13	100	0	50	28	0	0	72	0.86
6755919--6755957	2	19.5	2	100	0	78	48	0	0	51	1.00
6756032--6756308	127	2.2	127	82	7	332	28	7	27	37	1.83
6758792--6758831	15	2.7	15	80	3	55	50	0	2	47	1.14
6758778--6758839	12	4.9	12	73	24	56	53	0	1	45	1.10
6764866--6765252	192	2.0	192	84	3	501	18	33	12	36	1.88
6767540--6767598	18	3.2	18	85	9	66	49	0	3	47	1.18
6773293--6773533	123	2.0	123	92	1	403	38	24	14	22	1.91
6775705--6775840	50	2.7	50	79	4	130	58	13	12	15	1.64
6776641--6776680	14	2.9	14	88	0	62	45	5	0	50	1.23
6776951--6776991	18	2.3	19	80	16	52	43	0	0	56	0.99
6778233--6778305	34	2.1	34	87	0	101	47	10	4	36	1.58
6778295--6778405	32	3.5	33	77	18	103	40	8	6	45	1.59
6778580--6778613	18	1.9	18	94	5	61	50	0	0	50	1.00
6781201--6781230	2	15.0	2	100	0	60	50	0	0	50	1.00
6788051--6788087	2	18.5	2	94	0	65	0	0	48	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6792344--6792494	73	2.1	73	88	2	223	28	29	17	24	1.97
6794965--6795141	88	2.0	88	96	0	327	36	18	12	33	1.88
6809885--6809914	13	2.2	13	94	5	51	80	3	16	0	0.85
6819027--6819089	12	5.3	11	76	14	54	14	9	1	74	1.13
6819027--6819059	6	5.7	6	89	7	50	12	15	0	72	1.12
6819084--6819128	16	2.8	16	86	0	54	31	2	0	66	1.04
6819563--6819587	13	1.9	13	100	0	50	44	0	0	56	0.99
6824854--6824878	2	12.5	2	100	0	50	52	0	0	48	1.00
6827938--6827972	2	17.5	2	100	0	70	0	48	0	51	1.00
6835033--6835063	16	1.9	16	93	0	53	35	0	0	64	0.94
6842589--6842627	19	2.1	19	90	4	62	53	0	0	46	1.00
6842622--6842689	28	2.4	28	83	13	86	54	2	4	38	1.36
6842641--6842702	28	2.2	28	80	11	74	62	3	3	30	1.26
6842907--6842963	25	2.2	26	81	12	73	45	0	8	45	1.34
6843030--6843101	26	2.9	24	86	10	99	48	1	0	50	1.09
6843029--6843161	16	8.2	16	72	18	73	51	0	0	46	1.11
6843029--6843101	9	8.6	9	71	17	57	49	1	0	49	1.09
6843062--6843147	33	2.6	33	75	15	79	52	1	0	46	1.08
6843065--6843104	15	2.6	16	84	4	55	52	2	0	45	1.14
6843118--6843162	19	2.4	18	88	3	72	55	0	2	42	1.12
6843230--6843376	18	8.5	17	70	13	104	42	2	1	54	1.20
6843213--6843382	15	10.5	15	70	22	105	42	1	1	54	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6843213--6843401	37	5.1	37	75	14	176	43	1	1	53	1.17
6843192--6843367	48	3.9	45	73	19	163	42	1	1	54	1.17
6843205--6843396	15	13.4	15	67	22	53	43	1	1	54	1.16
6843324--6843402	13	6.5	13	75	21	64	44	0	1	54	1.08
6843364--6843434	22	3.2	22	85	2	88	43	1	0	54	1.08
6843220--6843424	37	5.6	37	72	17	128	43	1	0	53	1.16
6843546--6843594	21	2.4	19	78	15	53	28	4	6	61	1.38
6844630--6844702	28	2.6	28	82	6	94	30	2	4	63	1.27
6844706--6844791	28	3.0	28	75	14	86	50	0	2	47	1.14
6844708--6844791	29	3.0	27	72	19	73	50	0	2	47	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127