genome.fa.s656.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  119  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22866789--22866822	11	3.2	11	83	8	52	44	2	0	52	1.16
22867594--22867680	40	2.1	41	85	2	113	31	9	10	49	1.68
22867604--22867686	40	2.0	40	90	2	130	30	7	12	50	1.66
22868584--22868630	14	3.2	14	82	11	58	40	2	8	48	1.45
22868587--22868629	2	21.5	2	80	0	50	41	2	4	51	1.35
22868587--22868629	16	2.7	16	92	0	68	41	2	4	51	1.35
22880143--22880174	10	3.2	10	100	0	64	40	0	0	59	0.97
22889635--22889699	31	2.1	31	91	2	105	33	9	15	41	1.79
22890034--22890123	44	2.0	44	87	4	128	41	17	8	32	1.81
22890969--22891028	30	2.0	30	96	0	111	40	15	0	45	1.46
22890973--22891037	30	2.4	27	85	12	80	44	12	0	43	1.41
22905077--22905120	2	22.0	2	100	0	88	50	0	0	50	1.00
22915559--22915587	2	14.5	2	100	0	58	48	0	0	51	1.00
22916655--22916710	2	28.0	2	89	7	87	46	1	1	50	1.22
22917215--22917254	19	2.0	21	90	9	66	52	0	5	42	1.23
22917216--22917254	20	1.9	21	89	5	62	53	0	2	43	1.14
22920549--22920599	27	1.9	27	96	4	95	45	21	0	33	1.52
22920552--22920611	26	2.3	27	85	2	77	50	15	0	35	1.44
22925451--22925587	66	2.0	69	90	4	217	41	21	10	26	1.86
22929723--22929802	41	2.0	41	92	0	133	30	28	5	36	1.78
22934954--22934986	16	2.1	16	94	0	57	51	0	3	45	1.16
22935119--22935426	21	13.8	22	68	21	103	54	0	0	44	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22935052--22935420	33	10.2	35	67	22	110	55	1	0	43	1.12
22935144--22935411	33	8.3	33	72	18	174	55	0	0	43	1.10
22935042--22935411	15	24.9	15	67	21	169	54	1	0	43	1.12
22935437--22935493	15	3.5	15	73	17	51	38	3	1	56	1.27
22935456--22935496	19	2.2	19	86	4	57	36	4	0	58	1.20
22938992--22939022	2	15.5	2	100	0	62	0	51	0	48	1.00
22939611--22939766	52	3.0	52	84	1	179	26	23	8	42	1.82
22939876--22940052	55	3.2	55	63	24	134	27	27	11	33	1.91
22939857--22940081	113	2.0	113	99	0	441	26	27	10	35	1.89
22940799--22940934	52	2.6	52	85	2	184	27	27	6	38	1.81
22940799--22940955	52	3.0	52	83	5	149	27	24	7	40	1.82
22950603--22950632	4	7.5	4	100	0	60	50	23	0	26	1.50
22950796--22950822	2	13.5	2	100	0	54	48	0	0	51	1.00
22951107--22951141	3	11.7	3	100	0	70	34	0	0	65	0.93
22958912--22958960	24	2.0	25	88	4	73	36	2	4	57	1.30
22976962--22977017	18	3.0	20	78	21	68	50	5	0	44	1.25
22976967--22977036	34	2.0	35	81	15	83	51	2	1	44	1.25
22977830--22978006	82	2.2	82	100	0	354	34	11	6	47	1.65
22978610--22978647	2	19.0	2	94	0	67	47	0	2	50	1.15
22978913--22978940	14	2.0	14	100	0	56	50	14	7	28	1.69
22980738--22980801	22	2.8	24	76	9	62	46	0	1	51	1.10
22980810--22980853	23	1.9	23	86	9	63	38	0	2	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22983292--22983351	29	2.1	29	87	6	86	55	1	1	41	1.20
22987419--22987457	20	2.0	19	85	5	51	43	10	2	43	1.52
22991910--22992010	50	2.0	50	100	0	202	40	15	15	27	1.88
22993044--22993077	2	17.5	2	93	6	61	50	0	0	50	1.00
22995399--22995444	21	2.0	24	88	12	71	43	0	34	21	1.53
22995879--22995907	2	14.5	2	100	0	58	48	0	0	51	1.00
22996510--22996540	16	1.9	16	93	0	53	51	0	0	48	1.00
23011126--23011158	15	2.1	16	88	5	50	0	9	3	87	0.63
23011802--23011842	13	3.2	13	82	0	55	60	0	0	39	0.96
23013235--23013259	13	1.9	13	100	0	50	60	0	0	40	0.97
23020995--23021033	20	1.9	21	85	15	55	66	0	2	30	1.05
23021540--23021569	9	3.2	9	95	4	51	63	0	0	36	0.95
23021542--23021571	10	3.1	10	95	4	53	63	0	0	36	0.95
23024478--23024530	4	13.2	4	100	0	106	24	0	24	50	1.49
23028259--23028303	23	1.9	25	82	13	60	62	0	4	33	1.15
23028757--23028797	2	20.5	2	84	0	55	48	0	4	46	1.23
23029637--23029667	9	3.4	9	90	0	53	93	0	0	6	0.35
23038757--23038800	22	1.9	24	90	9	74	52	0	40	6	1.28
23045267--23045301	18	2.1	18	89	10	56	60	0	0	40	0.97
23053719--23053762	19	2.1	22	88	12	67	50	0	0	50	1.00
23067227--23067257	2	15.5	2	100	0	62	48	0	0	51	1.00
23077698--23077739	17	2.4	18	88	4	59	40	0	2	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23082034--23082062	2	14.5	2	100	0	58	48	0	0	51	1.00
23083943--23084060	61	1.9	62	87	5	177	53	5	11	30	1.58
23085088--23085113	2	13.0	2	100	0	52	50	0	0	50	1.00
23087822--23087847	2	13.0	2	100	0	52	50	0	50	0	1.00
23091648--23091676	14	2.0	15	93	6	51	55	3	0	41	1.17
23091673--23091727	28	2.0	28	82	7	67	40	1	0	58	1.09
23092292--23092334	18	2.5	17	82	14	52	11	2	13	72	1.22
23093821--23093867	18	2.6	17	72	21	51	19	2	10	68	1.30
23093858--23093910	22	2.5	20	82	11	54	13	13	9	64	1.50
23094545--23094705	52	3.1	51	78	10	166	40	18	11	29	1.86
23094567--23094708	51	2.8	51	82	3	160	40	19	12	27	1.87
23094842--23094935	47	2.0	49	85	4	129	42	20	11	25	1.86
23094981--23095081	48	2.1	48	83	7	125	42	21	12	22	1.87
23094766--23095086	145	2.2	145	87	4	450	42	20	11	24	1.86
23095007--23095159	81	1.9	81	87	0	225	43	21	13	21	1.87
23095117--23095198	42	2.0	41	85	2	110	41	20	12	25	1.87
23095243--23095552	75	4.1	75	88	0	440	42	16	9	30	1.80
23095732--23095844	35	3.3	35	79	9	126	38	18	13	29	1.89
23096056--23096096	21	1.9	22	85	5	57	17	19	7	56	1.64
23101313--23101372	17	3.7	15	80	12	57	13	0	11	75	1.06
23103166--23103205	17	2.3	18	84	16	57	37	10	0	52	1.35
23104482--23104551	36	1.9	36	94	0	122	30	2	14	52	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23109309--23109365	2	28.5	2	100	0	114	50	0	49	0	1.00
23110531--23110606	38	2.0	38	94	0	134	42	22	19	15	1.89
23110618--23110774	83	2.0	82	91	6	259	38	22	15	22	1.92
23122148--23122188	13	3.3	13	80	6	50	9	0	4	85	0.73
23122164--23122226	21	3.0	21	73	15	58	12	3	7	76	1.13
23123031--23123373	186	1.9	184	84	9	466	46	7	11	35	1.67
23133767--23133806	1	40.0	1	87	0	53	2	2	2	92	0.50
23133758--23133799	22	1.9	22	85	0	57	4	7	2	85	0.80
23133767--23133813	21	2.2	21	81	7	51	8	2	2	87	0.71
23133780--23133996	104	2.1	105	89	1	328	31	13	12	42	1.81
23134013--23134153	42	3.4	42	89	0	210	40	19	14	24	1.90
23134195--23134394	41	5.0	41	81	4	219	41	23	13	22	1.89
23134195--23134395	83	2.5	80	81	8	246	40	23	13	22	1.89
23140852--23140928	38	2.0	38	97	0	145	37	15	31	15	1.89
23141773--23141802	13	2.3	13	94	0	51	66	3	6	23	1.30
23144672--23144714	19	2.3	18	84	4	50	55	0	2	41	1.12
23150243--23150281	20	2.0	20	94	0	69	56	0	5	38	1.22
23155127--23155190	33	2.0	32	84	3	83	45	1	3	50	1.27
23155332--23155369	12	2.8	13	84	15	51	34	0	0	65	0.93
23162800--23162825	6	4.3	6	100	0	52	0	34	0	65	0.93
23163849--23163890	2	21.0	2	90	0	66	54	0	0	45	0.99
23171959--23171997	20	2.0	20	100	0	78	20	0	12	66	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23176133--23176165	17	1.9	17	100	0	66	72	3	12	12	1.23
23176178--23176222	7	6.4	7	97	0	81	57	0	26	15	1.38
23176471--23176517	21	2.2	22	84	3	60	17	6	2	74	1.12
23177955--23177992	18	2.2	18	85	4	51	23	15	10	50	1.75
23178072--23178243	19	9.4	19	70	16	87	24	12	12	50	1.74
23178072--23178282	18	11.6	18	70	14	103	26	12	12	48	1.76
23178072--23178251	37	4.9	37	78	10	135	25	11	12	50	1.74
23178072--23178282	35	5.9	34	77	12	158	26	12	12	48	1.76
23178340--23178434	36	2.6	36	75	8	86	27	10	10	51	1.69
23178418--23178463	17	2.6	18	86	6	67	23	2	13	60	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127