genome.fa.s656.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  75  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14409731--14410063	51	6.6	50	81	7	343	37	18	13	31	1.89
14410070--14410098	2	14.5	2	100	0	58	0	48	0	51	1.00
14421544--14421573	3	10.0	3	92	0	51	33	3	0	63	1.11
14423462--14423527	3	22.0	3	100	0	132	33	33	0	33	1.58
14424350--14425224	278	3.1	277	89	1	1288	40	19	16	23	1.91
14425792--14426191	145	2.8	142	76	8	369	41	12	13	33	1.82
14428462--14428507	18	2.5	19	89	10	78	28	13	15	43	1.83
14428526--14428557	8	4.0	8	95	0	55	75	3	0	21	0.95
14429995--14430041	21	2.2	21	84	0	58	8	19	2	70	1.24
14431048--14431172	44	2.9	44	84	1	153	56	10	6	26	1.56
14431844--14431887	17	2.8	16	80	10	54	54	11	11	22	1.68
14431861--14431928	22	3.0	22	91	2	109	60	8	4	26	1.46
14431900--14431962	32	2.0	33	87	6	94	63	6	4	25	1.38
14437692--14437732	20	2.1	19	86	13	57	43	0	0	56	0.99
14442912--14442940	12	2.4	12	100	0	58	17	24	17	41	1.90
14454324--14454350	14	1.9	14	100	0	54	70	14	0	14	1.17
14454324--14454370	22	2.1	22	84	0	58	65	14	0	19	1.26
14457736--14458412	62	10.9	62	67	18	286	37	12	13	36	1.82
14457732--14458046	123	2.6	118	85	4	420	37	12	13	36	1.83
14458161--14458396	67	3.7	63	74	11	194	38	11	13	36	1.82
14459023--14459049	2	13.5	2	100	0	54	48	0	0	51	1.00
14460069--14460103	2	17.5	2	93	0	61	48	2	0	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14461654--14465029	180	19.0	177	72	11	1498	39	7	10	42	1.69
14462257--14462293	18	2.0	19	89	5	58	29	5	5	59	1.42
14462518--14462550	17	2.0	17	88	5	50	48	0	12	39	1.40
14462295--14462601	155	2.0	154	80	1	346	38	7	11	41	1.71
14462449--14465029	180	14.4	181	75	6	1797	39	7	10	41	1.68
14462449--14469493	361	19.4	358	71	10	3042	39	7	10	42	1.68
14462510--14469493	538	12.8	536	73	11	3097	39	7	10	42	1.68
14465211--14469493	180	23.7	180	77	6	3341	39	7	10	42	1.68
14465214--14469505	181	23.8	180	77	7	3277	39	7	10	42	1.68
14465214--14469505	361	11.9	358	76	7	3292	39	7	10	42	1.68
14469511--14469569	16	3.6	16	76	17	66	49	1	13	35	1.52
14469240--14469791	297	1.9	296	80	4	655	41	7	10	40	1.68
14469542--14470124	181	3.2	177	81	5	591	40	7	11	40	1.70
14470512--14471333	181	4.6	182	76	6	581	41	9	9	39	1.71
14471357--14474825	181	19.2	180	69	12	994	40	8	9	41	1.67
14471357--14472452	361	3.1	359	79	6	988	41	7	9	41	1.66
14471653--14473370	925	1.9	927	78	6	1913	40	8	10	41	1.69
14472593--14474834	360	6.3	357	76	7	1460	40	8	9	41	1.68
14474920--14475232	166	1.9	165	81	8	384	42	7	9	40	1.65
14474864--14478477	542	6.8	535	76	9	2480	40	8	9	41	1.67
14474857--14478477	716	5.1	711	75	9	2551	40	8	9	41	1.67
14475076--14478533	181	19.3	180	75	8	2347	40	8	9	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14480867--14480901	16	2.2	16	94	0	61	42	11	14	31	1.81
14484400--14487307	181	15.9	179	72	10	1511	41	9	8	40	1.67
14484400--14486637	361	6.2	360	71	11	907	41	9	8	40	1.67
14485579--14485663	42	2.0	42	90	0	134	25	12	12	48	1.78
14486637--14486698	28	2.2	28	82	0	88	37	19	8	35	1.81
14487255--14487360	53	2.0	53	88	0	158	33	11	7	47	1.68
14486907--14487703	413	1.9	415	82	6	1001	41	9	7	41	1.66
14487334--14488687	180	7.6	179	76	8	1071	42	10	7	39	1.68
14487954--14488738	357	2.2	359	79	8	784	42	11	7	37	1.70
14490371--14490709	181	1.9	182	79	6	393	43	10	8	38	1.69
14490740--14491555	177	4.6	179	78	6	698	39	9	8	42	1.68
14491886--14494523	181	14.6	180	78	6	2158	41	9	8	41	1.67
14491882--14509445	361	48.5	357	70	12	6205	41	10	8	39	1.69
14494055--14495004	485	2.0	474	81	8	1095	42	10	7	38	1.68
14494520--14509445	181	83.1	179	72	10	6936	41	10	8	39	1.69
14494531--14509445	361	41.5	360	73	10	8379	41	10	8	39	1.69
14501177--14501206	14	2.1	14	100	0	60	13	13	6	66	1.43
14501041--14501388	195	1.8	194	81	5	418	40	12	7	39	1.72
14503891--14503920	14	2.1	14	93	0	51	13	16	6	63	1.50
14504886--14505188	150	2.0	150	81	8	348	38	8	12	39	1.74
14505044--14509445	180	24.6	179	72	10	2227	41	9	8	40	1.69
14509555--14509605	18	3.0	17	78	16	61	50	3	3	41	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14509606--14509648	17	2.5	17	96	0	77	41	9	9	39	1.69
14509637--14510058	180	2.3	181	82	8	497	39	7	10	43	1.67
14510366--14510870	176	3.0	162	78	10	460	40	6	10	41	1.67
14510531--14511514	182	5.5	177	76	7	735	38	7	10	43	1.68
14510531--14511475	181	5.2	180	78	7	809	38	7	10	43	1.67
14510531--14519100	362	23.6	360	70	12	2290	40	8	9	41	1.68
14511520--14519120	181	42.3	181	74	7	4762	40	8	9	41	1.68
14511520--14519120	539	14.1	539	75	8	4681	40	8	9	41	1.68
14515077--14515110	16	2.1	16	100	0	68	35	0	11	52	1.38
14517868--14519004	538	2.1	534	79	6	1188	40	7	9	41	1.66
14518323--14518993	358	1.9	356	80	4	805	41	7	8	42	1.64
14519122--14523036	181	22.0	178	73	11	2313	39	8	10	41	1.70
14519122--14523036	358	11.0	354	72	12	2161	39	8	10	41	1.70
14521942--14522614	179	3.8	179	75	9	504	40	8	9	41	1.69
14523520--14524226	58	11.7	57	81	12	740	33	13	8	44	1.74
14523520--14524225	177	3.9	175	87	7	943	33	13	8	44	1.74
14524057--14524081	12	2.1	12	100	0	50	52	0	24	24	1.48
14523999--14524197	70	3.0	70	72	19	199	35	12	11	41	1.78
14523938--14524197	128	2.0	129	93	2	450	34	12	10	43	1.76
14524243--14524327	5	16.6	5	75	18	77	80	1	3	15	0.92
14524243--14524385	22	6.0	23	68	17	78	74	3	4	17	1.11
14524244--14524327	32	2.6	33	88	7	127	79	1	3	15	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14524273--14524335	27	2.4	27	84	10	78	80	0	4	14	0.86
14524279--14524385	16	6.5	15	70	22	56	74	3	3	17	1.11
14524851--14524894	19	2.3	19	84	0	70	45	18	13	22	1.84
14525206--14525323	45	2.7	43	80	9	114	67	7	5	19	1.34
14525317--14525368	15	3.6	14	74	7	52	80	0	11	7	0.89
14525389--14525457	6	11.2	6	77	14	70	78	0	1	20	0.83
14525384--14525457	25	3.1	23	72	27	66	78	0	1	20	0.83
14525383--14525444	31	1.9	33	93	6	110	75	0	1	22	0.88
14525382--14525457	31	2.4	31	86	6	107	77	0	1	21	0.84
14525667--14525793	41	3.0	41	87	2	173	36	22	18	22	1.95
14525767--14525818	25	2.1	25	96	0	95	34	19	21	25	1.96
14525731--14525859	66	2.0	66	96	0	240	36	20	19	24	1.95
14525792--14525987	41	4.8	41	93	0	320	35	22	17	23	1.95
14525705--14525900	107	1.8	107	89	0	311	35	21	18	23	1.95
14525667--14525941	148	1.8	150	88	1	419	36	22	18	23	1.95
14526983--14527043	8	7.6	8	90	7	97	9	13	0	77	1.00
14526983--14527043	17	3.8	16	91	6	97	9	13	0	77	1.00
14526983--14527043	25	2.6	23	89	7	95	9	13	0	77	1.00
14535430--14535999	116	4.9	116	90	3	847	34	12	7	45	1.71
14535430--14535999	236	2.4	234	90	3	903	34	12	7	45	1.71
14535430--14535998	58	9.7	58	84	6	736	34	12	7	44	1.71
14536016--14536101	5	17.6	5	72	20	58	77	2	5	13	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14536015--14536101	30	2.9	29	76	10	86	77	2	6	13	1.08
14536011--14536101	39	2.3	39	83	7	105	76	2	6	14	1.07
14536961--14537079	45	2.7	43	79	7	114	67	5	6	20	1.35
14536961--14537054	21	4.3	20	73	17	73	69	5	6	19	1.30
14537199--14537254	6	9.2	6	84	11	78	78	1	1	17	0.92
14537192--14537255	31	2.2	29	84	13	80	76	1	1	20	0.95
14537199--14537255	17	3.2	17	81	16	71	77	1	1	19	0.95
14537351--14539965	180	14.7	179	73	9	1463	40	8	9	41	1.68
14537701--14537740	17	2.3	18	80	20	50	42	2	10	45	1.51
14537779--14538096	177	1.8	174	84	6	435	42	7	10	39	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127