Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  97  of  127  ( 15156 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18322934--18322979
24
2.0
23
91
8
76
52
13
4
30
1.59
18322941--18322990
24
2.1
23
89
10
75
56
12
4
28
1.54
18324271--18324344
12
6.3
12
71
12
64
64
9
1
24
1.31
18324272--18324347
18
4.4
17
73
14
66
64
7
1
26
1.29
18324309--18324356
18
2.7
18
90
3
71
62
8
0
29
1.24
18324302--18324356
24
2.4
22
85
11
74
63
7
0
29
1.21
18324759--18324988
65
3.5
65
72
14
229
36
7
16
40
1.76
18324743--18325032
133
2.2
133
96
1
519
38
7
16
37
1.78
18325001--18325118
17
6.9
17
73
6
87
38
13
15
33
1.86
18325024--18325069
18
2.7
18
86
6
60
39
19
17
23
1.92
18325423--18325494
32
2.3
31
85
2
99
38
15
6
38
1.74
18325349--18325462
46
2.5
46
77
5
115
44
16
5
33
1.70
18325476--18325549
23
3.2
23
73
17
73
44
17
4
33
1.68
18325455--18325697
46
5.3
45
79
7
197
40
14
6
38
1.72
18325477--18325642
91
1.8
91
85
2
235
42
15
6
36
1.71
18325983--18326038
25
2.2
25
100
0
112
44
16
12
26
1.83
18326064--18326110
24
2.0
24
87
8
69
38
21
12
27
1.90
18326845--18326887
18
2.4
17
85
14
52
4
9
0
86
0.71
18326746--18327005
145
1.8
143
82
8
339
26
16
5
51
1.65
18330258--18330305
21
2.3
21
96
0
87
62
12
4
20
1.46
18331637--18331690
20
2.7
19
85
5
72
48
9
7
35
1.63
18331729--18331770
19
2.3
19
88
12
61
64
9
2
23
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18331850--18331911
24
2.6
24
85
7
83
53
11
3
32
1.53
18332005--18332073
36
1.9
36
88
5
104
76
5
2
14
1.08
18331981--18332078
11
8.9
11
71
17
53
74
5
3
17
1.13
18331982--18332072
6
15.5
6
70
19
50
75
5
2
16
1.08
18332005--18332078
18
4.2
17
74
19
62
77
5
4
13
1.10
18332041--18332085
23
1.9
23
86
4
63
77
2
6
13
1.05
18332241--18332270
15
1.9
16
93
6
53
13
33
0
53
1.40
18332785--18332836
23
2.2
24
86
3
70
15
3
5
75
1.14
18341614--18341700
4
21.8
4
69
12
54
67
6
2
22
1.26
18343703--18343735
16
2.1
16
88
5
50
51
24
3
21
1.62
18352369--18352413
16
2.8
16
83
10
56
53
8
20
17
1.70
18355475--18355515
11
3.8
11
83
3
57
70
0
0
29
0.87
18362177--18362225
26
2.0
25
84
8
64
77
6
14
2
1.05
18369164--18369204
13
3.1
13
83
16
57
19
2
2
75
1.03
18369156--18369214
19
3.0
19
80
9
64
20
3
1
74
1.05
18369226--18369298
4
18.8
4
71
10
53
27
4
1
67
1.17
18369226--18369293
19
3.5
20
76
13
70
26
4
1
67
1.18
18370181--18370205
9
2.8
9
100
0
50
20
0
8
72
1.10
18370308--18370647
59
5.6
60
84
6
384
43
6
12
37
1.69
18370366--18370458
29
3.2
29
64
24
68
40
4
13
40
1.65
18374574--18374665
42
2.1
43
84
7
116
76
0
15
8
1.02
18374599--18374664
35
1.9
34
84
9
89
78
0
15
6
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18375868--18375926
22
2.7
22
86
5
75
37
8
20
33
1.83
18376447--18376653
42
5.0
41
78
11
174
22
16
21
39
1.92
18376488--18376788
84
3.5
84
83
6
338
23
16
20
39
1.92
18376476--18376818
126
2.6
127
79
11
322
23
15
20
39
1.92
18376539--18376818
42
6.4
45
79
10
296
23
16
20
39
1.92
18377026--18377067
21
2.0
20
95
4
75
19
2
0
78
0.86
18377022--18377076
26
2.1
26
83
12
69
20
1
0
78
0.85
18377083--18377133
4
13.5
4
79
8
54
25
3
0
70
1.04
18377083--18377139
14
4.1
14
82
8
64
26
3
0
70
1.03
18377084--18377149
25
2.7
24
77
13
64
27
3
1
68
1.13
18377201--18377230
8
3.6
8
95
4
51
13
0
0
86
0.57
18378043--18378127
9
8.9
9
70
23
50
22
1
4
71
1.11
18378138--18378256
62
1.9
62
89
3
186
51
4
11
32
1.58
18378153--18378319
62
2.7
61
85
8
196
47
4
11
35
1.62
18382195--18382250
26
2.1
27
80
9
62
57
1
10
30
1.43
18391045--18391085
18
2.3
19
83
12
59
39
26
0
34
1.57
18392970--18392998
14
2.0
15
93
6
51
55
6
0
37
1.27
18393154--18393215
28
2.2
28
88
0
88
32
11
3
53
1.53
18395962--18396018
26
2.2
25
79
11
62
56
22
5
15
1.60
18396329--18396420
45
2.0
45
100
0
184
60
6
13
19
1.54
18397099--18397139
21
1.9
22
85
5
57
65
0
0
34
0.93
18397989--18398062
29
2.6
29
89
2
114
33
5
1
59
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18398099--18398185
31
2.8
31
72
18
74
47
6
8
37
1.60
18406748--18406811
3
22.3
3
80
15
73
31
1
0
67
1.00
18406747--18406815
36
2.0
34
91
5
111
31
2
0
65
1.08
18406804--18406888
26
3.3
26
87
8
113
30
3
2
63
1.24
18407150--18407175
11
2.4
11
100
0
52
38
0
7
53
1.30
18407603--18407646
3
14.7
3
88
9
63
27
2
0
70
0.99
18407710--18408050
58
5.9
57
87
5
447
45
4
10
39
1.59
18407710--18408050
116
3.0
116
88
4
496
45
4
10
39
1.59
18418648--18418751
1
104.0
1
72
0
64
84
0
4
10
0.76
18418647--18418740
8
12.0
8
87
7
131
82
0
4
12
0.80
18418647--18418751
15
6.9
15
89
6
142
83
0
4
11
0.78
18418649--18418740
23
4.0
23
84
11
125
83
0
4
11
0.78
18419770--18419950
41
4.4
42
84
8
212
24
12
16
47
1.80
18419770--18419973
82
2.5
84
81
13
212
24
13
17
45
1.84
18419842--18419973
41
3.2
40
84
4
158
25
12
19
41
1.87
18420151--18420193
6
7.5
6
84
5
54
13
0
11
74
1.07
18420151--18420194
16
2.6
16
85
7
61
13
0
11
75
1.06
18420228--18420281
21
2.5
22
90
6
83
24
5
1
68
1.21
18420540--18420586
22
2.1
23
88
4
69
36
2
10
51
1.49
18421017--18421240
58
3.9
58
85
8
305
46
4
9
38
1.59
18421017--18421240
117
1.9
114
89
4
342
46
4
9
38
1.59
18421263--18421359
46
2.1
47
86
7
137
53
6
8
31
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18422465--18422520
27
2.0
28
82
6
69
28
3
8
58
1.45
18424933--18424984
20
2.6
19
85
8
68
48
0
0
51
1.00
18425815--18425854
3
13.7
3
94
5
73
67
0
0
32
0.91
18428615--18428651
2
18.5
2
100
0
74
48
0
0
51
1.00
18430527--18430588
21
3.0
20
86
4
81
35
17
0
46
1.49
18434228--18434270
19
2.1
21
91
8
72
46
0
0
53
1.00
18435290--18435346
26
2.2
26
81
3
71
33
15
7
43
1.74
18435483--18435898
9
42.7
9
65
15
80
56
7
1
33
1.38
18435520--18435566
10
4.8
10
76
5
51
65
6
2
25
1.27
18435482--18435626
20
7.4
20
73
9
77
55
6
0
36
1.32
18435621--18435686
20
3.3
19
87
10
96
62
7
1
28
1.32
18435624--18435695
21
3.5
21
88
9
96
59
8
1
30
1.35
18435722--18435759
19
1.9
19
89
5
58
50
10
0
39
1.37
18435736--18435823
32
2.7
33
71
7
90
59
6
4
29
1.44
18435858--18435928
27
2.8
24
80
10
61
63
2
0
33
1.09
18435858--18435928
26
2.7
25
82
6
70
63
2
0
33
1.09
18436010--18436042
14
2.3
15
89
5
50
81
6
0
12
0.85
18436074--18436107
10
3.3
10
88
8
50
76
2
0
20
0.92
18436104--18436149
20
2.2
21
77
14
51
56
0
0
43
0.99
18436118--18436186
31
2.3
30
82
12
79
40
2
1
55
1.24
18436556--18436580
11
2.3
11
100
0
50
52
0
8
40
1.31
18436484--18436606
9
12.8
9
68
14
50
39
0
7
52
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18436565--18436626
28
2.2
28
85
2
88
58
0
3
38
1.15
18436625--18436672
20
2.5
19
83
12
55
41
0
2
56
1.11
18436727--18436791
20
3.3
19
84
4
85
33
1
4
60
1.27
18436730--18436795
10
7.0
9
74
14
53
36
1
4
57
1.28
18436816--18436866
19
2.8
18
85
5
66
41
3
1
52
1.31
18436816--18436878
9
6.7
9
78
8
63
39
3
3
53
1.33
18437202--18437257
27
2.1
27
83
6
69
48
0
1
50
1.11
18437590--18437640
21
2.4
21
90
0
84
56
0
3
39
1.18
18437737--18437796
28
2.4
25
77
20
70
53
0
0
46
1.00
18437744--18437842
28
3.3
30
77
16
100
54
0
0
45
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127