genome.fa.s656.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  21  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4828784--4828834	21	2.4	20	83	9	57	76	5	5	11	1.14
4830992--4831164	90	1.9	91	80	8	201	20	16	11	50	1.76
4831692--4831754	22	2.8	22	75	20	58	74	4	1	19	1.08
4836789--4837274	240	2.0	238	97	0	927	35	11	12	39	1.81
4837801--4837825	12	2.1	12	100	0	50	52	8	0	40	1.31
4842860--4842978	39	2.9	37	73	19	94	29	2	5	63	1.29
4843608--4843654	19	2.5	19	85	0	67	27	29	19	23	1.98
4843977--4844020	15	2.9	15	86	0	52	9	0	4	86	0.70
4843976--4844003	1	28.0	1	100	0	56	0	0	0	100	0.00
4844036--4844354	161	2.0	160	91	2	525	27	15	16	40	1.89
4848032--4848069	13	3.1	13	92	7	62	89	0	10	0	0.49
4848032--4848069	18	2.2	18	90	4	60	89	0	10	0	0.49
4849279--4849776	41	12.1	41	92	3	754	23	17	24	34	1.96
4849783--4849869	1	87.0	1	74	0	66	86	6	0	6	0.72
4849782--4849869	12	7.0	12	82	8	77	85	7	0	6	0.75
4849786--4849869	18	4.6	17	80	5	87	85	7	0	7	0.73
4849783--4849869	33	2.7	32	84	7	106	86	6	0	6	0.72
4850042--4850153	39	2.8	40	74	14	97	29	2	5	62	1.31
4851150--4851193	15	2.9	15	86	0	52	9	0	4	86	0.70
4851149--4851176	1	28.0	1	100	0	56	0	0	0	100	0.00
4851209--4851527	161	2.0	160	92	2	534	27	15	16	40	1.89
4864833--4864882	2	25.0	2	95	0	91	48	2	0	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4866623--4866680	27	2.3	25	83	13	82	43	6	3	46	1.47
4867332--4868054	361	2.0	361	93	1	1245	38	9	10	40	1.73
4868372--4868400	12	2.4	12	100	0	58	65	0	0	34	0.93
4869739--4869807	32	2.2	32	82	15	81	47	2	1	47	1.25
4873443--4873491	25	2.1	25	85	11	68	42	0	0	57	0.99
4873543--4873586	2	22.0	2	85	0	61	50	0	4	45	1.22
4874837--4874866	15	2.1	15	93	6	53	56	0	0	43	0.99
4874837--4874885	14	3.6	14	78	10	57	53	0	2	44	1.12
4875613--4875651	16	2.3	18	86	8	55	56	2	0	41	1.13
4877739--4877811	35	2.1	34	82	10	85	57	4	0	38	1.18
4880522--4880588	30	2.2	30	89	0	98	38	7	14	38	1.75
4887254--4887283	15	2.1	14	93	6	51	43	3	20	33	1.68
4890040--4890070	16	1.9	16	93	0	53	35	3	0	61	1.12
4890164--4890344	73	2.4	72	80	6	166	38	5	6	49	1.51
4890222--4890403	68	2.6	69	81	11	201	37	6	4	51	1.48
4898440--4898473	17	1.9	18	88	5	52	32	11	20	35	1.89
4898440--4898473	18	1.9	17	88	5	50	32	11	20	35	1.89
4898515--4898589	5	12.7	6	77	20	54	18	2	1	77	0.96
4898521--4898580	5	12.6	5	80	16	65	20	3	0	76	0.92
4898521--4898588	23	3.0	23	95	4	120	20	2	0	76	0.92
4898513--4898580	18	4.0	16	81	10	82	19	2	1	76	0.99
4898513--4898588	13	6.5	12	77	20	81	19	2	1	76	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4898513--4898588	23	3.3	23	88	5	109	19	2	1	76	0.98
4900040--4900083	17	2.6	16	82	10	52	79	2	2	15	0.93
4900037--4900081	13	3.5	13	85	8	65	77	2	2	17	0.97
4900520--4900560	21	1.9	22	90	5	66	60	9	7	21	1.52
4900702--4900727	13	2.0	13	100	0	52	30	15	7	46	1.74
4900885--4900999	24	5.3	22	69	18	64	73	0	3	22	1.04
4900811--4900917	47	2.2	52	77	15	122	67	0	6	25	1.21
4900902--4900999	6	16.0	6	74	11	74	73	1	2	23	1.00
4900866--4900978	30	3.7	31	78	11	101	69	0	4	25	1.13
4901878--4901914	18	2.0	19	94	5	67	72	0	5	21	1.04
4905904--4906514	154	3.9	153	90	6	908	38	17	15	29	1.90
4905904--4906513	316	2.0	306	88	5	922	38	17	15	29	1.90
4906509--4906543	1	35.0	1	88	0	52	94	0	5	0	0.32
4906552--4906606	5	10.6	5	80	7	65	3	34	40	21	1.71
4906828--4906869	19	2.3	19	87	4	59	19	21	33	26	1.97
4906897--4906970	31	2.4	31	77	6	87	24	24	22	28	2.00
4907324--4907382	20	2.8	22	81	18	65	64	8	6	20	1.44
4907324--4907382	21	2.8	19	80	16	64	64	8	6	20	1.44
4907446--4907560	3	37.3	3	73	20	64	60	3	0	35	1.13
4907461--4907564	36	2.9	36	78	11	106	59	4	0	35	1.19
4907453--4907553	42	2.4	44	75	11	122	59	3	0	36	1.16
4907761--4907845	1	85.0	1	78	0	80	1	0	10	88	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4907852--4908425	82	7.0	82	88	6	715	36	21	18	23	1.94
4907852--4908425	124	4.6	122	86	7	761	36	21	18	23	1.94
4907852--4908425	206	2.8	204	89	4	854	36	21	18	23	1.94
4909621--4909690	17	4.3	15	74	15	59	5	17	0	77	0.96
4909621--4909661	21	2.0	21	85	4	57	2	14	0	82	0.76
4909644--4909697	19	2.8	20	86	11	76	5	18	0	75	0.98
4909630--4909675	11	4.4	11	78	10	60	2	17	0	80	0.81
4913367--4913974	152	3.9	153	93	3	959	38	17	14	29	1.90
4913969--4914004	1	36.0	1	88	0	54	94	0	5	0	0.31
4914024--4914066	5	8.6	5	89	0	68	0	34	41	23	1.55
4914012--4914073	15	4.0	15	78	4	52	3	32	43	20	1.68
4914285--4914329	19	2.4	18	85	7	63	22	20	31	26	1.98
4914354--4914427	31	2.4	31	79	6	96	22	24	24	28	2.00
4914781--4914840	21	2.9	19	81	16	66	65	8	6	20	1.43
4914794--4914840	20	2.3	22	85	10	64	61	8	8	21	1.51
4914905--4915020	3	37.3	3	75	19	73	61	3	0	35	1.13
4914917--4915007	34	2.5	33	75	21	85	59	4	0	36	1.18
4914905--4915016	28	3.8	30	69	22	85	60	3	0	35	1.14
4916825--4916924	3	34.0	3	73	13	66	62	4	3	31	1.29
4920392--4920453	2	31.5	2	83	3	81	45	0	0	54	0.99
4932654--4932706	27	2.0	26	85	3	70	41	3	7	47	1.50
4932734--4932770	2	19.0	2	94	5	67	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4935252--4935368	62	1.9	59	84	8	155	29	13	12	43	1.82
4935044--4935440	183	2.2	180	78	7	408	33	14	11	40	1.83
4935263--4935590	125	2.6	123	83	8	380	34	13	11	40	1.81
4938151--4938189	15	2.5	16	83	8	53	43	0	5	51	1.24
4938568--4938603	18	1.9	19	88	5	56	52	13	0	33	1.41
4939352--4939401	25	2.0	25	96	0	91	24	8	22	46	1.78
4944643--4944669	14	1.9	14	100	0	54	29	11	14	44	1.80
4947984--4948022	13	3.1	12	85	10	51	76	0	0	23	0.78
4947989--4948020	14	2.2	15	94	5	57	78	0	0	21	0.76
4950555--4950580	3	8.7	3	100	0	52	69	0	0	30	0.89
4951503--4951556	21	2.5	21	90	6	81	22	24	20	33	1.97
4959090--4959163	30	2.5	31	78	8	82	40	5	18	35	1.74
4959580--4959628	25	2.0	25	84	8	64	18	6	2	73	1.14
4959592--4959628	15	2.5	15	86	0	56	13	5	2	78	1.03
4959640--4959669	15	2.0	15	93	0	51	83	0	6	10	0.81
4964356--4964455	3	34.0	3	73	13	66	62	4	3	31	1.29
4967192--4967247	28	2.0	28	96	0	103	23	14	3	58	1.51
4968464--4968502	12	3.2	12	89	7	53	48	5	0	46	1.24
4969414--4969446	17	1.9	17	88	11	50	54	0	0	45	0.99
4970453--4970546	31	3.2	31	61	22	74	40	12	5	41	1.66
4970425--4970703	58	4.6	59	78	14	273	37	12	7	42	1.71
4970727--4970782	5	10.8	5	82	17	62	80	0	1	17	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4970727--4970783	6	9.7	6	83	12	66	80	0	1	17	0.79
4970727--4970794	23	2.9	23	78	8	75	77	0	1	20	0.84
4970805--4970841	3	12.0	3	94	5	65	67	0	0	32	0.91
4970729--4970841	22	5.4	22	68	16	78	71	1	0	25	1.01
4971655--4971785	24	5.6	22	73	17	97	70	0	5	22	1.12
4971654--4971786	44	2.9	43	80	12	122	71	0	5	22	1.11
4971675--4971786	21	5.1	22	74	13	81	71	0	6	21	1.13
4971712--4971810	50	2.0	50	84	6	128	70	0	5	24	1.07
4972008--4972046	16	2.4	16	91	8	62	2	0	7	89	0.56
4972008--4972053	15	3.1	14	84	9	56	4	0	8	86	0.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127