genome.fa.s656.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  68  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13227156--13227225	19	3.7	19	76	12	63	32	2	4	60	1.31
13227951--13227992	21	2.0	21	85	0	57	7	0	14	78	0.95
13228751--13228859	15	6.9	15	74	20	71	26	4	11	56	1.54
13230874--13230915	19	2.3	18	76	8	50	42	0	0	57	0.99
13230895--13230943	13	3.5	13	74	15	53	44	0	2	53	1.12
13230906--13230940	18	1.9	18	88	0	52	51	0	2	45	1.16
13230880--13230943	29	2.2	30	94	2	112	45	0	1	53	1.10
13232826--13232856	7	4.4	7	95	0	53	29	22	16	32	1.95
13233584--13233614	2	15.5	2	100	0	62	51	0	0	48	1.00
13233614--13233638	2	12.5	2	100	0	50	52	0	48	0	1.00
13233956--13233994	2	19.5	2	100	0	78	48	0	51	0	1.00
13235840--13235925	28	3.1	27	76	15	86	18	2	33	45	1.62
13235917--13236015	21	4.6	21	72	12	76	27	0	27	45	1.54
13235955--13236014	7	8.6	7	72	7	50	21	0	30	48	1.51
13235839--13236014	28	6.1	28	69	21	80	23	1	30	45	1.60
13237772--13238036	107	2.5	107	84	1	345	47	14	19	18	1.83
13237835--13239095	107	11.7	107	77	5	785	46	12	20	20	1.83
13238110--13238179	36	1.9	36	82	5	88	52	10	15	21	1.71
13237886--13239096	215	5.6	213	77	7	968	46	12	20	20	1.83
13238111--13238695	108	5.4	109	78	5	354	47	13	19	20	1.82
13239123--13239165	22	2.0	22	95	0	77	32	16	18	32	1.93
13239912--13239998	41	2.1	41	82	0	102	31	16	21	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13246242--13246277	18	2.1	17	90	10	56	0	11	5	83	0.80
13247243--13247267	13	1.9	13	100	0	50	32	0	0	68	0.90
13247880--13247908	13	2.2	13	100	0	58	24	20	13	41	1.89
13248029--13248075	22	2.2	21	92	3	76	12	0	36	51	1.40
13248056--13248241	28	6.5	28	76	13	119	24	0	30	45	1.58
13248144--13248228	7	11.7	7	71	16	57	24	0	32	42	1.55
13248036--13248242	87	2.4	88	82	10	241	23	0	30	45	1.57
13248379--13248422	17	2.9	15	81	15	54	27	0	0	72	0.85
13250012--13250078	35	1.9	35	84	6	91	50	14	17	16	1.78
13250359--13250547	36	5.2	35	68	16	109	49	12	16	21	1.78
13250026--13250914	107	8.3	109	80	3	793	46	13	19	20	1.83
13250026--13250915	216	4.1	215	79	5	791	46	13	19	20	1.83
13251703--13251750	25	1.9	25	100	0	96	43	12	12	31	1.80
13251703--13251763	25	2.4	25	91	0	95	42	11	18	27	1.84
13259897--13259931	15	2.3	15	95	0	61	31	2	11	54	1.51
13260004--13260132	30	4.4	29	78	10	129	20	0	32	45	1.57
13260000--13260133	59	2.3	57	86	8	173	21	0	31	46	1.57
13260051--13260134	13	6.0	13	74	17	62	23	0	30	45	1.53
13260000--13260134	29	4.6	28	75	13	112	22	0	31	45	1.57
13261584--13261617	3	11.3	3	87	0	50	41	0	0	58	0.98
13261584--13261622	12	3.2	12	88	3	51	43	0	2	53	1.14
13272911--13272940	15	2.0	15	93	0	51	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13274103--13274145	20	2.2	20	95	0	77	62	9	4	23	1.44
13274104--13274151	22	2.3	20	89	7	69	66	8	4	20	1.35
13275842--13275924	34	2.5	33	76	5	85	66	7	2	24	1.29
13275853--13275932	6	13.8	6	77	7	76	63	6	2	27	1.31
13275876--13275907	16	2.0	16	93	0	55	71	3	0	25	1.00
13275842--13275932	22	4.0	23	77	7	87	64	6	2	26	1.29
13285793--13285830	17	2.2	17	100	0	76	31	13	13	42	1.82
13289067--13289287	80	2.8	77	81	14	247	51	5	9	33	1.58
13293190--13293237	17	2.8	17	78	15	53	66	0	20	12	1.24
13294392--13294567	46	3.9	45	77	7	162	35	9	14	40	1.78
13294402--13294567	43	3.7	45	78	5	167	34	9	15	40	1.79
13294630--13294758	17	7.6	17	72	6	100	28	17	10	42	1.83
13294641--13294716	33	2.3	33	84	6	91	27	18	10	43	1.83
13294626--13294770	34	4.3	34	75	8	107	31	16	11	41	1.83
13294762--13294853	16	5.6	16	72	11	78	43	11	11	32	1.78
13294974--13295030	17	3.4	17	76	9	62	33	17	7	42	1.76
13294946--13295029	34	2.5	34	82	0	96	33	16	8	41	1.78
13295032--13295105	22	3.3	22	68	22	55	29	9	12	48	1.72
13296576--13296624	25	1.9	26	87	4	73	34	0	2	63	1.06
13306117--13306142	13	2.0	13	100	0	52	38	7	23	30	1.83
13308290--13308358	23	2.9	24	82	6	77	33	0	0	66	0.92
13308304--13308358	25	2.2	25	87	6	76	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13308695--13308724	10	3.1	10	95	4	53	36	0	0	63	0.95
13308697--13308726	9	3.2	9	95	4	51	36	0	0	63	0.95
13314525--13314580	28	2.0	28	86	13	80	48	1	0	50	1.11
13324391--13324417	2	13.5	2	100	0	54	51	0	0	48	1.00
13326661--13326848	98	1.9	97	97	1	358	41	6	10	42	1.64
13327007--13327157	50	3.0	50	84	2	194	37	8	17	37	1.80
13327626--13327682	26	2.1	28	84	12	75	19	5	1	73	1.11
13327628--13327691	12	5.1	12	74	23	51	20	6	1	71	1.15
13331699--13331728	11	2.9	10	90	9	51	76	0	23	0	0.78
13332640--13332985	118	2.9	118	77	2	257	20	23	10	45	1.83
13333289--13333347	17	3.4	18	79	6	77	33	13	13	38	1.84
13333247--13333463	86	2.5	87	81	2	249	31	14	13	40	1.84
13333934--13334080	51	2.8	52	83	5	174	40	8	12	39	1.72
13334549--13334641	19	4.8	19	74	11	66	18	4	1	76	1.01
13334561--13334632	6	10.7	7	76	18	57	20	2	1	75	1.01
13336574--13336606	18	1.9	17	88	11	50	54	0	6	39	1.25
13338228--13338514	62	4.8	59	77	15	265	32	13	8	46	1.72
13338419--13338506	27	3.2	27	64	17	72	37	14	5	42	1.70
13338238--13338534	118	2.5	119	75	17	319	32	12	7	47	1.70
13338593--13338663	11	6.2	11	73	14	54	78	5	1	14	0.99
13338634--13338660	10	2.7	10	100	0	54	77	7	0	14	0.97
13338981--13339026	19	2.4	19	85	7	58	23	21	32	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13339988--13340081	50	1.9	48	95	4	170	36	21	17	25	1.94
13339901--13340134	42	5.5	42	84	13	291	36	22	17	23	1.95
13339905--13340147	131	1.8	130	92	4	407	37	21	18	22	1.94
13341190--13341296	7	14.7	7	85	9	135	13	17	0	68	1.27
13341181--13341297	15	7.9	15	80	10	102	12	17	0	68	1.26
13345366--13345651	59	4.7	60	84	9	339	33	13	7	45	1.72
13345733--13345781	20	2.5	19	84	12	64	81	4	2	12	0.91
13346183--13346225	20	2.2	20	86	0	59	9	25	32	32	1.88
13347164--13347211	21	2.2	24	85	14	68	6	8	2	83	0.88
13347339--13347382	22	2.0	22	82	8	54	45	18	15	20	1.85
13350211--13350412	100	2.0	101	90	0	316	36	20	11	31	1.88
13352458--13352491	16	2.1	16	88	0	50	73	2	8	14	1.19
13353954--13353992	21	2.0	20	85	10	53	35	0	5	58	1.20
13354209--13354251	3	14.3	3	100	0	86	32	0	0	67	0.91
13355173--13355235	19	3.2	19	80	10	72	46	0	0	53	1.00
13355169--13355232	32	2.0	32	81	6	76	48	0	0	51	1.00
13355204--13355279	29	2.5	32	81	16	90	50	0	0	50	1.00
13355196--13355254	24	2.4	25	77	5	68	49	0	0	50	1.00
13355711--13355772	30	2.1	30	81	6	72	38	0	0	61	0.96
13364425--13364462	2	19.0	2	100	0	76	50	0	0	50	1.00
13366658--13366683	11	2.4	11	100	0	52	57	7	0	34	1.27
13380870--13380913	21	2.2	20	87	4	61	27	0	6	65	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13380925--13381005	38	2.0	40	84	11	105	46	0	1	51	1.08
13380925--13381005	40	2.0	40	86	11	114	46	0	1	51	1.08
13384750--13384804	24	2.3	23	82	14	67	18	0	9	72	1.10
13384799--13384836	19	2.1	19	85	9	53	50	5	5	39	1.48
13387311--13387383	35	2.1	35	82	10	87	42	9	8	39	1.67
13390021--13390057	19	2.0	19	89	5	58	18	13	5	62	1.50
13391667--13391692	2	13.0	2	100	0	52	50	0	0	50	1.00
13398715--13398765	19	2.6	19	79	14	59	50	0	0	49	1.00
13398760--13398794	18	1.9	18	88	11	54	57	8	0	34	1.29
13402691--13402721	11	2.8	11	95	0	53	48	3	9	38	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127