genome.fa.s656.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  91  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17182974--17183012	14	2.7	14	80	4	51	12	17	0	69	1.19
17187270--17187973	47	14.0	50	78	11	617	27	12	21	38	1.89
17187477--17187973	50	9.7	55	77	13	264	26	13	21	38	1.90
17187532--17187973	50	8.8	49	78	11	425	26	13	21	38	1.91
17187551--17187793	105	2.3	103	85	6	330	27	12	22	37	1.91
17187270--17187962	145	4.6	147	78	12	617	27	12	21	38	1.89
17188140--17188211	19	3.7	18	78	12	72	66	4	5	23	1.30
17188170--17188217	19	2.6	19	87	9	64	70	4	6	18	1.25
17190677--17190733	25	2.3	24	82	8	69	26	3	1	68	1.15
17199102--17199162	32	1.9	32	83	6	79	50	0	4	44	1.23
17203577--17203640	21	3.0	21	86	0	83	31	15	1	51	1.53
17204337--17204369	9	3.8	9	96	4	59	93	0	6	0	0.33
17204336--17204369	1	34.0	1	87	0	50	94	0	5	0	0.32
17204355--17204400	24	2.0	23	82	4	56	73	2	4	19	1.10
17204884--17204932	26	2.0	25	88	8	73	44	4	4	46	1.41
17204879--17204940	24	2.4	24	77	17	63	37	4	3	54	1.38
17207746--17207837	6	15.0	6	72	4	58	30	1	9	58	1.37
17207747--17207829	18	4.5	19	73	11	66	30	1	10	57	1.40
17208531--17208628	24	4.2	24	74	18	73	16	5	3	75	1.11
17208711--17208760	24	2.1	24	81	7	57	34	4	12	50	1.58
17208789--17208842	24	2.2	24	90	0	81	38	3	5	51	1.43
17220100--17220182	42	2.1	40	84	8	107	34	4	16	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17220771--17220824	21	2.6	21	87	0	81	18	22	29	29	1.97
17225544--17225582	21	1.9	21	89	5	62	33	2	17	46	1.62
17226321--17226380	24	2.5	24	86	5	86	23	15	25	36	1.93
17226694--17226834	46	3.1	47	80	4	153	32	4	20	41	1.74
17226693--17226818	47	2.7	47	83	1	155	31	3	23	41	1.72
17227015--17227065	16	3.1	16	75	5	57	23	9	19	47	1.79
17227009--17227083	33	2.2	34	81	6	82	30	9	14	45	1.77
17227456--17227494	15	2.4	16	83	12	53	17	7	17	56	1.64
17228988--17229067	6	12.7	6	71	17	56	17	1	2	78	0.92
17228982--17229022	12	3.3	12	86	6	55	12	7	0	80	0.90
17228988--17229024	19	1.9	19	94	0	65	13	2	0	83	0.74
17228988--17229067	15	5.7	14	75	15	67	17	1	2	78	0.92
17228994--17229067	14	5.1	14	77	8	60	17	1	2	78	0.94
17229001--17229053	21	2.6	21	90	3	81	15	0	3	81	0.83
17229144--17229207	24	2.7	23	87	2	92	32	3	10	53	1.52
17229243--17229299	24	2.4	24	90	0	87	36	7	8	47	1.62
17229656--17229689	18	1.9	18	88	5	52	44	0	0	55	0.99
17229651--17229695	18	2.3	20	75	21	51	42	0	4	53	1.21
17232234--17232268	8	4.2	8	89	7	52	80	0	0	20	0.72
17232234--17232268	9	4.1	9	92	7	56	80	0	0	20	0.72
17232234--17232268	17	2.1	17	94	0	61	80	0	0	20	0.72
17232215--17232282	31	2.2	31	87	7	95	77	1	2	17	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17233733--17233810	17	4.6	17	77	6	77	37	15	20	26	1.92
17233694--17233817	51	2.4	51	89	1	176	36	15	19	29	1.92
17233543--17233766	86	2.6	85	80	2	218	35	12	19	32	1.89
17233746--17233811	34	1.9	34	84	6	89	34	15	19	30	1.93
17234005--17234357	110	3.2	111	77	3	311	39	14	23	22	1.90
17234156--17234359	111	1.8	111	84	2	275	40	14	24	20	1.90
17233997--17234359	55	6.6	54	75	7	212	39	14	23	22	1.90
17239174--17239217	16	2.6	17	85	3	63	63	0	11	25	1.27
17240875--17240932	30	2.0	29	83	10	73	68	3	6	20	1.27
17242212--17242275	33	1.9	33	84	6	85	43	10	10	34	1.75
17242296--17242338	19	2.3	19	87	0	59	44	18	0	37	1.50
17243007--17243069	17	3.7	17	84	0	90	47	25	1	25	1.61
17243252--17243296	21	2.1	21	84	8	56	44	4	15	35	1.67
17249541--17249601	32	1.9	32	87	12	90	62	14	0	22	1.32
17249620--17249787	59	2.8	59	76	7	171	57	18	1	22	1.49
17249726--17249779	23	2.4	22	76	11	56	59	18	1	20	1.47
17252062--17252101	20	2.0	21	85	5	55	30	5	10	55	1.54
17257255--17257298	22	2.0	23	82	13	56	43	2	15	38	1.60
17260696--17260919	120	1.9	119	85	6	308	34	11	6	47	1.66
17260652--17260999	59	6.0	58	78	11	254	33	11	7	47	1.68
17260874--17260985	56	2.0	57	85	5	156	31	13	8	47	1.72
17262771--17262997	42	5.4	42	84	1	233	45	18	12	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17263100--17263184	41	2.1	41	90	0	134	32	15	10	41	1.81
17263501--17263585	21	4.0	21	89	0	134	36	14	7	42	1.72
17263947--17263990	23	1.9	23	90	0	70	27	20	4	47	1.69
17264839--17264873	16	2.1	16	89	5	52	2	11	0	85	0.69
17264849--17264890	9	4.8	9	85	5	50	4	9	0	85	0.72
17264850--17264890	8	4.7	9	82	14	50	4	9	0	85	0.73
17268888--17269193	59	5.2	58	77	8	264	33	11	6	48	1.66
17270933--17271196	41	6.4	41	78	9	225	44	19	12	24	1.84
17271013--17271196	42	4.4	42	89	3	264	45	21	11	21	1.83
17272060--17272103	23	1.9	23	86	9	63	27	25	2	45	1.65
17272967--17273004	7	5.3	7	87	6	58	15	15	0	68	1.22
17272952--17273004	15	3.6	15	85	10	65	13	16	0	69	1.18
17272997--17273033	17	2.2	17	90	0	56	8	16	5	70	1.30
17276316--17276343	10	2.8	10	100	0	56	82	0	7	10	0.85
17277146--17277324	56	3.2	55	81	12	188	33	11	5	49	1.63
17279810--17279846	19	1.9	19	94	0	65	54	0	16	29	1.43
17279943--17279976	5	6.8	5	86	0	50	2	32	2	61	1.26
17283401--17283427	5	5.4	5	100	0	54	40	0	18	40	1.51
17284344--17284376	16	2.1	16	88	11	50	57	0	39	3	1.14
17291163--17291207	22	2.0	22	87	8	65	82	2	6	8	0.93
17291184--17291226	9	4.7	9	83	16	61	79	2	9	9	1.03
17291184--17291226	17	2.3	19	84	15	63	79	2	9	9	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17291182--17291233	28	1.9	26	88	7	77	80	1	7	9	0.97
17291185--17291234	19	2.7	19	90	6	77	78	4	8	10	1.09
17291160--17291234	19	3.9	19	75	12	73	77	4	8	10	1.11
17292592--17293184	43	13.8	43	77	7	438	26	13	15	44	1.83
17299926--17299963	17	2.2	17	95	0	67	39	10	10	39	1.74
17300141--17300277	41	3.3	40	69	18	111	40	2	8	48	1.45
17300154--17300273	40	3.0	40	69	6	107	44	2	5	47	1.40
17300361--17300446	42	2.0	42	82	4	102	36	6	10	46	1.65
17300324--17300466	21	6.8	21	70	7	85	32	6	10	50	1.63
17301948--17302004	30	1.9	30	85	7	80	36	8	10	43	1.70
17301974--17302032	22	2.7	22	86	0	73	42	16	3	37	1.66
17302907--17303010	7	15.4	7	75	7	63	23	1	31	43	1.65
17302943--17303005	28	2.2	28	82	0	72	28	1	28	41	1.65
17302973--17303019	21	2.2	21	88	0	67	29	2	23	44	1.65
17303561--17303605	4	11.2	4	90	0	63	48	28	2	20	1.61
17305950--17305981	12	2.7	12	95	0	55	43	6	9	40	1.62
17311016--17311326	129	2.4	129	82	5	360	46	9	21	22	1.79
17312587--17312746	80	2.0	80	82	4	198	42	15	12	30	1.83
17313182--17313242	18	3.3	18	72	19	54	83	3	8	4	0.89
17313450--17313575	64	2.0	64	85	0	171	38	27	13	19	1.90
17313683--17313788	23	4.7	23	66	2	79	31	23	17	27	1.97
17313672--17313788	45	2.6	45	86	1	153	30	23	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17314178--17314336	6	26.5	6	78	14	150	81	15	0	3	0.83
17314185--17314351	29	6.1	27	77	15	157	80	14	1	2	0.89
17314185--17314332	1	148.0	1	64	0	53	81	14	0	3	0.81
17318624--17318669	11	4.4	11	81	8	51	52	2	19	26	1.58
17318698--17318740	11	3.7	11	76	11	50	2	16	0	81	0.79
17318698--17318762	24	2.8	24	75	15	64	4	16	1	76	1.02
17323601--17323632	12	2.7	12	100	0	64	25	28	12	34	1.92
17325300--17325333	9	3.8	9	92	0	59	5	11	0	82	0.83
17325289--17325331	18	2.3	18	88	4	59	11	13	0	74	1.07
17325298--17325348	9	5.7	9	81	6	50	3	9	3	82	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127