genome.fa.s656.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  24  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5324140--5324227	42	2.1	41	95	2	158	34	26	17	22	1.96
5324074--5324205	67	2.0	66	96	1	246	36	28	16	18	1.93
5324033--5324227	108	1.8	107	95	1	354	36	26	16	21	1.94
5325376--5325444	16	4.9	15	77	13	67	5	17	0	76	0.97
5325380--5325410	8	3.9	8	91	0	53	9	16	0	74	1.07
5325396--5325438	9	4.7	9	80	13	52	2	13	0	83	0.74
5325396--5325442	21	2.3	20	78	7	51	2	14	0	82	0.75
5325428--5325470	19	2.3	19	84	15	63	6	20	0	72	1.08
5329307--5329688	57	6.7	57	86	6	526	35	13	7	43	1.72
5329411--5329496	27	3.1	28	64	29	76	36	11	8	44	1.71
5329307--5329687	111	3.4	113	88	7	565	35	13	7	43	1.73
5329451--5329691	119	2.0	119	90	1	376	33	14	7	45	1.71
5329713--5329804	19	4.8	20	71	26	65	77	1	6	15	1.03
5329717--5329801	6	13.7	6	68	19	50	77	1	5	15	1.01
5329717--5329795	31	2.5	33	82	17	96	77	1	6	15	1.03
5329717--5329765	16	3.1	15	80	11	53	79	0	4	16	0.88
5330365--5330421	26	2.2	27	84	6	73	40	17	7	35	1.77
5330711--5330810	30	3.2	30	81	13	105	65	2	9	24	1.32
5330773--5330856	26	3.3	25	76	15	66	71	1	2	25	1.05
5330803--5330885	17	4.8	17	77	18	66	68	3	0	27	1.06
5330821--5330883	25	2.8	23	80	17	62	65	3	0	31	1.09
5330788--5330883	8	12.6	8	72	16	53	65	3	1	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5332461--5332490	1	30.0	1	93	0	51	0	0	3	96	0.21
5333943--5333986	2	22.0	2	100	0	88	50	0	0	50	1.00
5334601--5334694	47	2.0	46	83	2	116	35	11	19	34	1.88
5335176--5335224	16	3.1	16	78	21	59	75	4	18	2	1.06
5335711--5335741	2	15.5	2	100	0	62	51	0	0	48	1.00
5336559--5336619	27	2.3	26	78	10	70	49	0	0	50	1.00
5336836--5336865	14	2.1	14	93	0	51	23	0	0	76	0.78
5338479--5338503	9	2.8	9	100	0	50	36	0	0	64	0.94
5339531--5339586	23	2.5	22	77	11	60	53	1	0	44	1.11
5342398--5342431	6	5.8	6	93	6	61	67	14	0	17	1.23
5342398--5342431	11	2.9	12	91	8	61	67	14	0	17	1.23
5342468--5342849	56	6.7	57	86	7	517	35	13	7	43	1.71
5342877--5342964	5	16.8	5	72	23	58	77	1	4	17	1.00
5342878--5342919	9	4.8	9	77	16	52	78	0	0	21	0.75
5342877--5342957	15	5.5	15	70	24	66	77	1	3	17	0.97
5342877--5342964	11	7.8	11	71	18	65	77	1	4	17	1.00
5343525--5343582	26	2.2	28	82	14	70	37	15	8	37	1.78
5343870--5343966	29	3.2	29	77	13	90	63	3	9	23	1.38
5343956--5343998	17	2.4	18	84	7	61	74	2	0	23	0.93
5343993--5344023	3	10.7	3	93	6	55	67	0	0	32	0.91
5343977--5344026	20	2.5	20	87	6	66	70	0	0	30	0.88
5348329--5348361	16	2.1	16	88	11	50	75	6	18	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5348334--5348371	13	2.9	13	88	0	58	81	2	15	0	0.80
5348867--5348901	2	17.5	2	100	0	70	51	0	0	48	1.00
5349720--5349780	27	2.3	26	78	10	70	49	0	0	50	1.00
5349967--5350031	24	2.9	23	75	6	62	32	1	1	64	1.12
5351128--5351170	20	2.2	19	83	4	50	27	6	4	60	1.43
5353906--5353961	16	3.6	16	70	2	51	60	1	0	37	1.07
5353891--5353957	30	2.2	32	83	5	84	55	1	0	43	1.09
5353955--5353979	12	2.1	12	100	0	50	68	0	0	32	0.90
5355286--5355456	61	2.8	61	89	0	252	26	7	28	37	1.83
5355487--5355528	20	2.0	20	86	4	57	33	0	0	66	0.92
5355560--5355594	15	2.4	15	95	4	63	42	0	0	57	0.99
5356053--5356081	4	7.2	4	100	0	58	75	0	0	24	0.80
5356749--5356779	15	2.1	15	100	0	62	25	19	0	54	1.44
5357773--5357839	32	2.1	31	86	13	91	34	0	5	59	1.22
5357796--5357839	16	2.8	16	79	6	54	36	0	4	59	1.18
5359800--5359905	39	2.7	40	75	19	105	30	0	6	63	1.20
5359807--5359920	35	3.3	34	72	20	94	31	0	6	61	1.26
5359924--5359960	14	2.4	17	86	13	53	16	5	2	75	1.10
5359882--5360006	57	2.2	57	80	11	130	28	4	3	64	1.30
5360817--5360844	13	2.2	13	100	0	56	14	0	7	78	0.95
5360804--5360844	21	2.0	20	90	4	64	9	0	9	80	0.91
5360935--5361513	57	9.7	57	85	9	716	46	7	12	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5360915--5361513	239	2.5	235	88	6	857	46	7	12	33	1.70
5362295--5362348	17	3.1	16	79	12	54	68	1	3	25	1.16
5365173--5365219	24	2.0	24	86	0	67	40	4	0	55	1.19
5366612--5366680	34	2.0	34	86	5	95	36	1	5	56	1.32
5367007--5367069	26	2.4	26	79	15	67	53	0	0	46	1.00
5367037--5367079	19	2.3	19	87	0	59	58	0	0	41	0.98
5367016--5367118	41	2.5	40	77	16	106	51	0	0	46	1.14
5369819--5369863	16	2.6	18	86	10	58	73	0	8	17	1.08
5374642--5374694	27	2.0	27	88	0	79	22	13	24	39	1.90
5375981--5376087	32	3.3	32	80	3	126	50	9	1	38	1.46
5376351--5376443	32	2.9	32	81	0	114	32	5	7	54	1.51
5376537--5376595	30	2.0	29	80	9	66	45	1	1	50	1.21
5376672--5376715	19	2.2	20	88	4	63	50	0	4	45	1.22
5377926--5377965	17	2.3	17	86	4	53	27	5	2	65	1.27
5379931--5379973	14	3.1	14	74	12	52	46	13	11	27	1.78
5382126--5382234	52	2.1	52	87	3	157	43	5	7	44	1.55
5382612--5382887	153	1.8	154	88	4	425	44	6	4	43	1.51
5386635--5386702	34	2.0	34	100	0	136	32	20	20	26	1.97
5396244--5396301	21	2.6	22	86	8	82	53	0	0	46	1.00
5396255--5396324	22	3.2	21	82	8	59	57	0	0	42	0.99
5401171--5401245	32	2.4	32	84	2	89	49	1	0	49	1.09
5401255--5401289	18	1.9	18	88	0	52	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5402508--5402614	30	3.6	29	75	8	92	47	1	9	41	1.46
5405683--5405725	23	1.9	22	90	4	68	58	0	0	41	0.98
5416071--5417318	357	3.5	356	84	2	1533	36	11	14	37	1.83
5424919--5425133	99	2.2	99	79	6	220	34	17	16	31	1.92
5431627--5431662	3	12.0	3	100	0	72	33	0	0	66	0.92
5433726--5433751	8	3.2	8	100	0	52	73	0	0	26	0.84
5434983--5435007	2	12.5	2	100	0	50	52	0	0	48	1.00
5435314--5435353	20	2.0	20	85	14	55	55	0	0	45	0.99
5437071--5437136	34	1.9	35	87	3	98	42	12	9	36	1.74
5444676--5444703	2	14.0	2	100	0	56	0	50	0	50	1.00
5444703--5444735	2	16.5	2	100	0	66	48	51	0	0	1.00
5446451--5446490	2	20.0	2	94	0	71	52	0	0	47	1.00
5457954--5458018	34	1.9	34	87	6	96	44	6	12	36	1.67
5461473--5461535	32	1.9	33	87	3	92	38	1	7	52	1.40
5464004--5464471	231	2.0	231	97	0	873	26	15	16	41	1.88
5474123--5474166	22	2.0	21	82	13	52	38	0	4	56	1.20
5475341--5475375	16	2.2	16	90	5	54	65	0	2	31	1.07
5481775--5481804	11	2.7	11	94	0	51	46	10	16	26	1.78
5485615--5485648	3	11.3	3	87	0	50	26	38	35	0	1.57
5485614--5485648	12	2.9	12	100	0	70	25	40	34	0	1.56
5486557--5486587	13	2.4	13	100	0	62	41	0	9	48	1.36
5493863--5493909	22	2.1	22	100	0	94	38	40	0	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5498054--5498081	5	5.6	5	100	0	56	64	0	35	0	0.94
5503827--5503933	34	3.1	34	80	5	135	30	15	17	35	1.92
5504771--5504826	21	2.7	20	75	8	58	41	28	1	28	1.66
5509383--5509417	2	17.5	2	93	0	61	0	0	54	45	0.99
5513139--5513167	13	2.1	14	93	6	51	82	0	0	17	0.66
5514351--5514390	2	20.5	2	84	5	55	45	0	0	55	0.99
5514629--5514674	21	2.2	21	88	7	67	34	0	2	63	1.07
5514768--5514807	16	2.7	14	88	7	53	55	0	0	45	0.99
5514773--5514809	16	2.3	16	90	0	56	56	0	0	43	0.99
5514770--5514817	14	3.3	14	80	11	51	60	0	0	39	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127