genome.fa.s656.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  85  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16271931--16271963	15	2.2	15	94	0	57	27	0	12	60	1.32
16271966--16272047	27	3.0	27	80	7	85	17	2	29	51	1.58
16271983--16272061	21	3.8	21	83	8	90	13	3	32	49	1.61
16272185--16272232	21	2.7	16	72	27	51	22	0	37	39	1.55
16272036--16272208	28	6.1	30	69	18	104	15	2	35	46	1.58
16272222--16272310	14	6.2	14	75	5	88	21	1	28	49	1.57
16272222--16272310	43	2.1	43	83	8	110	21	1	28	49	1.57
16272222--16272310	29	3.1	28	81	3	97	21	1	28	49	1.57
16272439--16272477	3	13.3	3	83	5	53	33	2	0	64	1.08
16272436--16272470	17	2.1	17	94	0	61	37	2	0	60	1.12
16273771--16273806	10	3.6	10	96	0	63	11	0	0	88	0.50
16273761--16273807	19	2.4	20	82	3	60	10	6	2	80	0.96
16274075--16274155	37	2.2	37	81	0	99	48	18	19	13	1.81
16274155--16274199	22	2.0	22	82	0	54	33	15	20	31	1.93
16274550--16274619	22	3.2	22	83	4	88	37	15	18	28	1.92
16274682--16274734	22	2.4	22	90	0	88	28	18	26	26	1.98
16274976--16275068	41	2.3	41	88	1	143	36	15	12	35	1.85
16275375--16275404	15	2.0	15	93	0	51	43	13	23	20	1.86
16275388--16275439	26	2.0	26	85	7	70	28	15	21	34	1.94
16276816--16276883	1	68.0	1	76	0	55	2	2	7	86	0.75
16276817--16276883	28	2.4	27	85	7	82	2	2	7	86	0.76
16283447--16283487	21	1.9	22	90	5	66	17	2	24	56	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16283448--16283499	21	2.5	19	80	17	59	13	1	28	55	1.49
16283475--16283660	29	6.5	28	73	13	121	18	1	31	48	1.58
16283475--16283586	7	15.9	7	68	15	52	16	2	32	49	1.59
16283481--16283660	28	6.3	27	75	17	107	18	1	31	48	1.58
16283606--16283717	15	7.7	15	67	16	58	22	0	29	47	1.57
16283481--16283643	58	2.8	56	76	13	154	17	1	31	49	1.58
16283665--16283724	14	4.2	14	71	12	50	21	1	26	50	1.59
16283604--16283724	44	2.8	43	79	9	129	22	0	28	47	1.57
16283852--16283917	3	22.3	3	90	3	107	33	1	0	65	1.02
16284011--16284054	21	2.1	21	86	0	61	22	4	2	70	1.17
16284025--16284086	20	3.4	18	81	14	74	29	1	4	64	1.23
16287525--16287559	6	5.8	6	90	10	54	17	2	0	80	0.84
16287525--16287554	11	2.6	11	94	5	51	16	0	0	83	0.65
16287523--16287559	17	2.1	18	95	5	67	18	2	0	78	0.87
16288029--16288068	4	9.8	4	83	5	53	25	2	0	72	0.97
16288018--16288068	21	2.3	22	80	6	68	23	1	0	74	0.92
16292597--16292635	20	1.9	21	94	5	71	84	2	12	0	0.72
16294313--16294379	34	2.0	34	82	5	82	35	11	11	40	1.79
16294552--16294603	17	3.0	17	77	5	59	30	17	17	34	1.93
16294985--16295358	43	8.7	43	78	7	364	28	16	13	42	1.85
16296141--16296176	17	2.1	17	94	0	63	25	5	0	69	1.10
16296137--16296170	17	1.9	18	88	5	52	26	2	0	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16296184--16296217	16	2.1	16	88	0	50	58	0	0	41	0.98
16303900--16303932	12	2.6	13	85	4	50	45	24	6	24	1.75
16308306--16308332	10	2.7	10	100	0	54	51	18	0	29	1.46
16319038--16319065	3	9.3	3	100	0	56	67	0	0	32	0.91
16319998--16320057	21	2.9	21	75	2	50	80	5	10	5	1.02
16320974--16321017	12	3.4	14	79	20	51	79	0	9	11	0.93
16321589--16325334	862	4.4	853	77	8	3054	36	15	12	35	1.85
16328646--16331138	861	2.9	853	77	6	2195	36	15	13	34	1.86
16331795--16331857	20	3.2	20	68	19	51	55	12	1	30	1.47
16331902--16331982	24	3.2	24	68	19	74	55	8	4	30	1.51
16331833--16331989	52	3.0	52	78	10	160	56	9	3	30	1.49
16331922--16332164	32	8.0	32	66	19	126	51	12	6	29	1.66
16331961--16332078	56	2.1	55	88	3	173	55	10	5	29	1.55
16332134--16332199	20	3.1	20	72	16	60	51	10	6	31	1.61
16332154--16332295	24	6.1	24	72	16	102	52	10	4	32	1.55
16332147--16332295	45	3.3	45	81	13	155	53	10	4	32	1.53
16332239--16332284	20	2.2	20	88	3	65	56	10	2	30	1.46
16332234--16332311	21	3.6	21	69	11	59	56	10	2	30	1.46
16332172--16332309	24	5.9	25	72	19	75	54	10	3	31	1.51
16332899--16332931	17	1.9	17	93	0	57	6	15	3	75	1.11
16333269--16333631	42	8.4	43	71	10	238	36	19	13	30	1.91
16333335--16333442	50	2.2	50	81	6	121	33	19	14	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16333292--16333472	92	1.9	94	86	6	262	34	20	13	30	1.92
16333648--16333852	85	2.4	85	85	3	261	40	17	13	29	1.87
16333637--16333852	42	5.1	43	81	3	233	39	18	12	29	1.88
16335286--16335326	20	2.2	20	86	8	59	4	12	0	82	0.81
16335286--16335341	26	2.2	26	83	6	69	7	10	1	80	0.97
16335286--16335344	18	3.2	18	81	13	59	6	10	1	81	0.94
16335298--16335345	19	2.5	19	83	6	62	8	6	2	83	0.88
16335810--16335908	49	2.0	49	88	0	144	18	16	24	41	1.89
16338223--16338334	56	2.0	56	98	0	215	18	20	19	41	1.91
16341234--16341291	20	2.9	20	75	10	64	48	12	6	32	1.67
16341415--16341476	24	2.6	24	85	7	90	53	9	3	33	1.50
16341485--16341659	52	3.3	49	71	19	138	54	10	4	30	1.53
16341556--16341756	32	6.8	32	66	24	131	51	12	5	29	1.64
16341588--16341626	21	1.9	19	85	10	51	53	7	5	33	1.51
16341487--16341683	107	1.8	108	85	3	281	52	12	5	29	1.60
16341673--16341784	22	5.6	19	72	20	63	54	13	5	26	1.60
16341455--16341709	107	2.3	112	74	13	276	53	11	5	29	1.58
16341739--16341784	23	2.0	23	91	4	76	60	10	4	23	1.47
16341798--16341925	32	4.2	32	72	20	103	49	10	8	31	1.68
16341730--16341863	20	7.2	20	64	23	69	52	11	6	29	1.63
16341659--16341944	55	5.2	55	84	1	367	51	12	7	29	1.67
16343403--16343456	25	2.1	26	89	3	83	31	1	9	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16343464--16343519	24	2.3	24	81	6	69	32	5	14	48	1.66
16343525--16343574	23	2.3	22	80	10	59	32	8	10	50	1.65
16343496--16343651	55	2.8	54	84	9	208	28	5	12	53	1.62
16343525--16343579	20	2.6	21	75	18	51	30	7	9	52	1.60
16343603--16343772	20	9.4	20	61	22	61	28	6	12	52	1.63
16343599--16343685	32	2.7	32	92	1	138	28	5	11	54	1.59
16343545--16343733	87	2.2	87	92	1	308	28	5	12	53	1.60
16343685--16343881	32	6.4	32	73	14	153	27	6	13	53	1.63
16343630--16343804	56	3.1	56	85	2	219	29	6	11	53	1.61
16343833--16343874	21	2.0	20	90	4	66	26	4	11	57	1.54
16343810--16343886	33	2.4	33	88	2	111	24	5	14	55	1.59
16343837--16343907	33	2.2	33	87	5	99	25	7	15	52	1.68
16343894--16343936	20	2.2	19	87	4	59	39	4	6	48	1.51
16349290--16349334	22	2.0	22	95	0	81	35	6	15	42	1.73
16349576--16349630	1	55.0	1	79	0	56	89	0	3	7	0.60
16349578--16349630	8	6.6	8	91	8	74	88	0	3	7	0.61
16349576--16349633	12	5.0	12	80	4	66	87	0	5	6	0.65
16349578--16349630	17	3.2	16	84	10	72	88	0	3	7	0.61
16351084--16351596	42	12.1	42	85	4	624	27	14	19	37	1.91
16351084--16351596	169	3.0	168	89	3	746	27	14	19	37	1.91
16352361--16352424	31	2.1	31	90	0	101	25	7	14	53	1.67
16352391--16352446	20	2.6	22	80	8	62	28	5	12	53	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16352392--16352674	55	5.2	55	82	5	342	28	6	12	52	1.63
16352499--16352542	23	2.0	23	86	4	63	34	9	6	50	1.61
16352547--16352609	21	3.0	20	81	6	81	28	4	9	57	1.51
16352547--16352609	20	3.0	20	81	6	81	28	4	9	57	1.51
16352392--16352674	108	2.6	110	82	5	349	28	6	12	52	1.63
16352392--16352739	55	6.3	54	78	10	302	28	5	12	53	1.60
16352664--16352811	32	4.9	32	71	22	131	29	4	12	54	1.57
16352610--16352814	88	2.3	88	91	4	333	29	4	12	52	1.60
16352696--16352746	24	2.3	23	80	12	63	31	5	9	52	1.58
16352392--16352746	163	2.2	162	79	9	382	28	5	12	53	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127