genome.fa.s656.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  46  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9105447--9105572	60	2.1	60	89	0	189	40	11	27	20	1.86
9109994--9110051	28	2.0	29	86	3	82	50	1	0	48	1.11
9110406--9110447	15	2.8	15	75	13	50	52	2	0	45	1.13
9113380--9113481	53	1.9	53	82	7	127	31	12	7	48	1.70
9115219--9115272	5	10.8	5	81	18	60	22	0	3	74	0.98
9119682--9119724	13	3.4	12	78	12	50	4	11	0	83	0.78
9128705--9128743	12	3.2	12	78	7	51	15	12	0	71	1.14
9133056--9133811	49	15.4	49	79	6	721	28	10	19	41	1.85
9133056--9133814	196	3.9	194	83	5	807	28	10	19	41	1.85
9133989--9134043	12	4.5	12	80	8	58	21	5	0	72	1.04
9134008--9134049	15	3.1	14	86	10	52	16	9	0	73	1.08
9134026--9134068	18	2.3	18	88	4	59	4	20	0	74	1.00
9138080--9138131	21	2.5	20	87	6	77	48	0	0	51	1.00
9138134--9138166	14	2.4	14	90	10	50	57	0	0	42	0.98
9144450--9144502	26	2.0	26	85	0	70	35	9	1	52	1.45
9144664--9144798	10	13.8	10	69	20	54	56	4	2	37	1.32
9144681--9144725	22	2.0	22	83	8	56	64	6	0	28	1.19
9144762--9144798	19	1.9	19	94	0	65	51	0	2	45	1.15
9144769--9145225	10	47.3	10	66	16	121	34	3	5	57	1.37
9144819--9144969	28	5.3	27	77	15	112	29	4	3	62	1.31
9144832--9144941	19	5.7	18	72	14	69	28	5	2	63	1.30
9144819--9145040	58	3.8	56	74	17	157	30	4	3	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9145098--9145228	19	6.3	20	72	17	63	38	0	3	57	1.17
9145917--9145946	12	2.5	12	100	0	60	50	26	0	23	1.50
9151283--9151325	12	3.3	13	87	6	52	58	13	9	18	1.62
9151285--9151325	14	3.1	14	86	10	59	60	12	9	17	1.57
9152197--9152242	23	2.0	23	82	0	56	73	17	2	6	1.14
9152710--9152745	17	2.1	17	90	10	56	22	0	2	75	0.94
9160222--9160267	6	7.3	6	85	9	56	60	0	36	2	1.09
9160224--9160266	8	5.4	8	85	0	50	58	0	39	2	1.11
9160655--9161367	360	2.0	359	95	0	1291	35	14	17	32	1.90
9165013--9165042	15	1.9	16	93	6	53	70	3	0	26	1.03
9178861--9178936	33	2.2	34	84	9	93	51	7	3	36	1.50
9179466--9179503	19	2.0	20	89	5	60	23	2	0	73	0.95
9189722--9189769	24	2.0	24	100	0	96	33	20	29	16	1.95
9191449--9191535	30	3.0	29	71	19	74	45	14	10	28	1.78
9191493--9191553	30	2.0	31	87	9	90	40	18	9	31	1.83
9202050--9202091	18	2.2	20	84	12	54	59	0	4	35	1.19
9204394--9204433	18	2.1	18	86	9	53	72	5	0	22	1.04
9205222--9205267	12	3.8	12	82	0	56	63	0	0	36	0.95
9205467--9205526	28	2.1	30	84	6	79	70	3	16	10	1.29
9206232--9206266	17	2.1	16	89	5	52	77	5	17	0	0.96
9213841--9214039	3	69.0	3	68	15	82	27	5	3	64	1.30
9213876--9213933	26	2.3	25	84	3	71	31	5	1	62	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9213959--9214023	11	6.8	10	75	19	59	23	4	1	70	1.14
9213963--9214040	8	10.9	7	73	21	56	21	3	1	73	1.07
9213959--9214032	5	14.2	5	72	13	60	21	4	1	72	1.08
9213971--9214030	14	4.4	14	80	17	72	21	3	1	73	1.07
9213979--9214036	11	5.5	11	76	15	50	20	1	1	75	0.97
9215028--9215074	24	2.0	23	84	8	60	74	0	0	25	0.82
9219339--9219430	8	11.6	8	72	15	66	75	1	10	13	1.11
9219338--9219392	25	2.2	24	87	3	74	80	1	7	10	0.99
9219339--9219422	23	3.6	23	78	3	78	75	1	9	14	1.11
9220549--9220600	21	2.5	21	96	0	95	34	5	17	42	1.73
9220574--9220625	27	1.9	27	92	0	86	30	7	13	48	1.71
9220747--9220940	66	3.0	66	75	11	200	39	5	13	41	1.69
9220857--9220895	21	1.9	21	89	5	62	43	5	12	38	1.65
9221210--9221241	15	2.1	15	94	0	55	59	6	15	18	1.57
9221325--9221398	17	4.6	16	75	12	80	39	10	10	39	1.75
9221325--9221398	31	2.3	33	81	9	98	39	10	10	39	1.75
9221363--9221407	17	2.6	18	85	3	65	37	11	11	40	1.76
9221834--9221884	16	3.5	16	75	20	58	23	7	0	68	1.15
9221829--9221927	27	3.6	27	86	6	119	23	8	1	67	1.23
9221887--9221929	19	2.4	18	81	11	52	25	6	0	67	1.15
9221848--9221922	38	2.0	38	84	5	98	21	6	1	70	1.17
9221786--9221929	3	47.3	3	69	21	52	25	6	3	64	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9222114--9222403	138	2.0	142	85	7	390	45	5	19	30	1.72
9227913--9227988	22	3.5	21	73	5	62	42	10	14	32	1.80
9228100--9228197	45	2.2	44	83	3	115	35	17	5	41	1.71
9228100--9228197	22	4.4	22	71	13	74	35	17	5	41	1.71
9229556--9229585	15	2.0	15	93	0	51	63	6	13	16	1.50
9230308--9230363	27	2.1	27	93	0	94	41	25	1	32	1.66
9230681--9230737	24	2.4	23	82	5	60	33	14	8	43	1.76
9234408--9234466	31	1.9	30	83	16	77	62	8	8	20	1.49
9235278--9235362	44	2.0	43	92	2	143	58	14	8	18	1.60
9244907--9245400	176	2.8	175	91	4	769	51	10	5	33	1.58
9244899--9245488	87	6.6	87	81	9	615	51	9	5	33	1.57
9246906--9246938	17	2.0	17	88	5	50	69	9	9	12	1.36
9248221--9248256	14	2.6	14	91	8	56	77	0	11	11	0.99
9248215--9248256	15	2.9	15	82	13	52	76	0	14	9	1.02
9248443--9248478	3	11.7	3	94	5	63	66	0	0	33	0.92
9248664--9248751	39	2.3	37	78	9	104	43	4	13	38	1.65
9262003--9262036	18	1.9	17	94	5	59	91	0	8	0	0.43
9263581--9263642	32	1.9	33	83	9	83	67	0	9	22	1.19
9263858--9263884	1	27.0	1	100	0	54	100	0	0	0	0.00
9264168--9264198	16	1.9	16	93	0	53	54	19	3	22	1.58
9265387--9265431	20	2.2	20	84	4	54	20	22	2	55	1.54
9268643--9268734	24	3.8	23	74	17	71	41	7	13	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9268668--9268745	24	3.3	23	75	10	68	41	7	12	38	1.72
9268643--9268745	48	2.1	49	82	8	122	41	6	12	38	1.70
9269608--9269632	12	2.1	12	100	0	50	16	16	8	60	1.58
9270340--9270395	24	2.4	23	80	11	69	30	3	5	60	1.36
9271303--9271336	2	17.0	2	87	0	50	50	2	2	44	1.32
9271446--9271500	21	2.6	21	83	13	69	34	7	12	45	1.70
9271718--9271762	17	2.6	17	82	3	54	53	6	0	40	1.27
9271728--9271761	18	1.9	17	88	5	50	55	8	0	35	1.31
9271642--9271852	102	2.1	103	81	4	239	48	10	5	34	1.62
9272992--9273058	28	2.3	31	89	7	104	53	1	0	44	1.09
9272987--9273037	10	5.4	10	75	11	54	52	0	0	47	1.00
9273084--9273162	28	2.8	28	74	3	68	54	5	2	37	1.36
9277200--9277225	3	8.7	3	100	0	52	69	0	0	30	0.89
9282433--9282464	16	2.0	16	93	0	55	34	0	0	65	0.93
9282435--9282474	15	2.6	16	88	4	55	40	0	0	60	0.97
9283014--9283123	16	6.7	16	71	20	68	47	0	0	50	1.13
9283258--9283304	13	3.2	16	77	16	50	42	6	4	46	1.48
9283255--9283304	14	3.4	15	73	13	50	44	6	4	46	1.47
9286219--9286249	2	15.5	2	93	0	53	48	0	0	51	1.00
9294234--9294279	10	4.5	10	83	2	56	43	2	52	2	1.25
9295538--9295585	2	24.0	2	95	0	87	0	52	0	47	1.00
9299402--9299429	13	2.2	13	100	0	56	7	21	7	64	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9299547--9299571	8	3.1	8	100	0	50	12	0	0	88	0.53
9302552--9302594	14	2.9	14	79	6	50	79	0	16	4	0.90
9304060--9304444	189	2.0	189	89	2	594	31	11	10	45	1.75
9308830--9308864	17	2.1	17	94	0	61	25	17	5	51	1.67
9309084--9309109	12	2.2	12	100	0	52	26	0	7	65	1.20
9313165--9313416	66	3.8	66	80	5	233	46	10	9	33	1.71
9313314--9313370	21	2.7	21	83	8	71	45	5	8	40	1.58
9313160--9313459	66	4.5	64	79	5	210	45	9	9	35	1.69
9313422--9313513	23	4.1	23	77	6	73	42	7	7	42	1.62
9313535--9313616	23	3.6	23	76	1	85	45	9	14	30	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127