Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  110  of  127  ( 15156 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20523129--20523193
21
3.1
21
84
4
87
35
21
0
43
1.53
20524033--20524069
19
1.9
19
88
0
56
43
0
24
32
1.55
20525230--20525262
2
16.5
2
100
0
66
51
0
0
48
1.00
20525685--20525721
13
2.7
14
91
4
58
72
0
2
24
0.97
20527464--20527520
22
2.7
21
81
10
62
17
3
5
73
1.16
20527563--20527641
3
25.7
3
73
19
56
29
5
0
65
1.13
20527522--20527628
38
2.8
38
76
16
98
34
6
0
57
1.31
20527505--20527628
20
6.1
20
73
15
85
33
5
1
59
1.30
20527618--20527662
12
3.6
12
84
6
54
15
2
2
80
0.92
20528180--20528224
19
2.3
20
85
7
58
57
0
42
0
0.98
20528483--20528564
3
26.7
3
80
16
64
24
1
0
74
0.89
20528486--20528568
7
11.7
7
79
16
91
24
1
0
74
0.89
20528478--20528565
21
4.1
21
82
16
110
22
1
0
76
0.86
20528476--20528565
24
3.8
23
81
10
110
22
1
0
76
0.85
20528594--20528644
6
8.7
6
81
12
54
13
3
0
82
0.81
20528594--20528644
22
2.2
24
82
10
61
13
3
0
82
0.81
20528602--20528644
12
3.9
11
85
8
61
13
4
0
81
0.84
20528673--20529136
66
7.7
61
78
15
322
43
6
12
37
1.67
20528673--20529132
126
3.8
124
79
13
418
44
5
12
37
1.66
20528972--20529072
51
2.0
51
82
7
125
48
4
13
32
1.64
20529778--20529827
13
3.8
13
86
0
73
24
36
16
24
1.94
20529771--20529831
26
2.3
26
97
0
113
22
36
16
24
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20532832--20532876
21
2.2
21
84
4
56
24
4
2
68
1.19
20534303--20534830
60
8.9
58
84
6
598
44
5
11
37
1.65
20534303--20534829
118
4.5
118
83
6
649
44
5
11
37
1.64
20534591--20534627
16
2.2
17
90
4
58
37
2
0
59
1.12
20534590--20534627
15
2.4
16
82
13
51
39
2
0
57
1.12
20539627--20539683
26
2.2
26
84
12
73
70
0
17
12
1.17
20541478--20541665
41
4.4
41
83
10
200
23
12
21
42
1.87
20541529--20541665
47
3.0
47
90
6
205
21
11
21
45
1.83
20541696--20541817
41
3.0
41
88
0
181
24
17
20
37
1.93
20541832--20541870
17
2.4
16
83
8
51
87
2
5
5
0.75
20543514--20543901
59
6.6
59
84
8
454
44
5
12
37
1.65
20543494--20543901
119
3.5
119
85
5
524
44
5
11
37
1.65
20543514--20543901
178
2.2
173
85
8
516
44
5
12
37
1.65
20544745--20544814
10
7.0
10
73
20
58
74
0
18
7
1.04
20544746--20544814
20
3.5
20
73
11
70
73
0
18
7
1.05
20544737--20544800
31
2.0
31
85
14
87
71
0
18
9
1.12
20546588--20546754
41
4.1
40
83
5
156
27
13
20
37
1.91
20546588--20547037
82
5.5
82
79
10
277
26
15
21
36
1.93
20546675--20547081
42
9.9
41
83
8
445
25
14
22
37
1.92
20546680--20547081
82
4.9
80
83
7
436
25
14
22
37
1.93
20546879--20547097
41
5.1
44
81
6
199
24
15
21
38
1.92
20547272--20547314
4
10.5
4
80
14
52
20
2
2
74
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20547359--20547398
20
2.0
20
90
0
62
35
5
0
60
1.19
20547367--20547406
20
2.0
20
85
5
53
37
5
0
57
1.21
20547414--20547448
12
3.2
11
88
11
54
14
0
2
82
0.77
20548273--20548344
4
20.5
4
86
11
65
25
1
0
73
0.91
20548315--20548340
3
8.7
3
100
0
52
30
0
0
69
0.89
20548369--20548428
5
11.8
5
77
22
63
16
3
0
80
0.85
20548370--20548428
6
10.3
6
77
12
54
15
3
0
81
0.82
20548445--20548606
59
2.7
61
89
7
249
46
4
10
37
1.60
20548504--20548830
107
2.9
109
81
9
371
46
5
11
36
1.63
20548631--20548954
60
5.4
59
80
12
276
43
5
11
39
1.65
20548764--20548895
66
2.0
66
95
1
239
40
6
11
41
1.68
20548614--20548952
122
2.8
122
82
10
360
44
5
11
38
1.64
20554675--20554699
2
12.5
2
100
0
50
0
0
48
52
1.00
20556442--20556466
2
12.5
2
100
0
50
52
0
0
48
1.00
20562523--20562553
15
2.0
16
93
6
55
19
6
3
70
1.22
20562663--20562697
13
2.5
15
81
18
56
37
0
11
51
1.38
20564675--20564861
89
2.1
89
84
2
241
26
6
13
54
1.63
20564765--20564816
26
2.0
26
84
0
68
21
9
11
57
1.62
20570698--20570779
26
3.2
26
87
0
110
30
4
14
50
1.64
20570928--20571180
129
2.0
128
89
0
389
29
10
15
45
1.78
20575195--20575371
74
2.4
72
84
7
230
48
7
8
35
1.63
20575277--20575484
112
1.8
112
81
7
260
46
6
9
37
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20575523--20575579
18
2.8
22
72
22
61
50
7
3
38
1.46
20575524--20575603
40
2.0
41
87
7
119
50
7
3
38
1.49
20575229--20575606
185
2.0
185
80
8
412
48
7
7
37
1.59
20578351--20578421
28
2.4
29
80
13
83
49
2
2
45
1.31
20581056--20581093
6
6.3
6
100
0
76
15
0
0
84
0.63
20582032--20582060
2
14.5
2
100
0
58
51
0
0
48
1.00
20584579--20584631
27
1.9
28
85
11
74
24
7
5
62
1.44
20586615--20586658
21
2.0
22
83
12
56
31
0
4
63
1.14
20588579--20588613
18
1.9
18
88
0
52
42
0
0
57
0.99
20591495--20591549
28
2.0
27
82
3
65
34
3
0
61
1.13
20592455--20592481
2
13.5
2
100
0
54
51
0
0
48
1.00
20594125--20594168
23
1.9
23
82
17
56
43
4
0
52
1.22
20595018--20595070
27
1.9
28
85
11
74
24
7
5
62
1.44
20598024--20598098
31
2.5
30
88
2
105
36
0
6
57
1.25
20600229--20600290
29
2.2
28
80
5
72
50
9
1
38
1.45
20601770--20601827
28
2.1
28
83
6
73
37
1
5
55
1.33
20605668--20606175
246
2.1
244
89
4
776
29
8
12
49
1.71
20607387--20607417
2
16.0
2
93
6
55
48
0
0
51
1.00
20612675--20612773
42
2.3
43
77
11
105
44
0
4
51
1.20
20613550--20613586
19
1.9
19
88
0
56
40
5
5
48
1.49
20631586--20631622
16
2.2
17
90
4
58
8
10
0
81
0.89
20632994--20633019
13
2.0
13
100
0
52
53
0
0
46
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20636331--20636510
89
2.0
89
97
0
342
23
13
17
45
1.84
20641953--20641990
2
18.5
2
89
5
58
5
50
0
44
1.24
20653288--20653317
6
5.0
6
91
0
51
20
66
0
13
1.24
20662693--20662777
28
3.0
27
79
5
80
44
0
4
50
1.22
20662757--20662798
18
2.3
19
88
8
61
45
0
0
54
0.99
20663378--20663425
23
2.1
23
88
7
71
41
2
0
56
1.11
20663530--20663568
20
2.0
20
90
10
62
35
23
7
33
1.83
20663752--20663789
16
2.4
16
86
8
51
47
0
0
52
1.00
20669506--20669543
2
19.0
2
88
0
58
47
2
2
47
1.30
20669543--20669585
2
21.5
2
100
0
86
51
0
48
0
1.00
20670009--20670095
33
2.6
33
81
3
95
31
8
13
47
1.72
20676956--20677025
35
2.0
35
100
0
140
28
25
2
42
1.69
20677312--20677344
17
1.9
17
100
0
66
45
6
24
24
1.75
20679872--20680462
306
1.9
306
81
5
712
36
13
13
35
1.85
20685079--20685141
30
2.1
30
85
2
83
39
6
3
50
1.44
20686210--20686238
3
9.7
3
100
0
58
68
0
0
31
0.89
20696153--20696196
22
2.0
22
95
0
79
31
11
13
43
1.80
20700039--20700082
22
2.0
22
95
0
79
31
11
13
43
1.80
20702496--20702521
12
2.2
12
100
0
52
42
26
15
15
1.87
20703574--20703618
22
2.0
22
100
0
90
51
0
0
48
1.00
20703573--20703624
22
2.5
21
88
11
81
51
0
0
48
1.00
20718337--20718381
22
2.0
22
95
0
81
26
11
24
37
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20718961--20719014
17
3.2
16
80
15
65
44
0
0
55
0.99
20718950--20719042
33
3.0
33
86
7
115
44
1
1
53
1.14
20718990--20719053
28
2.3
28
86
5
94
43
3
0
53
1.16
20718971--20719048
28
2.6
28
86
10
93
46
2
0
51
1.14
20724727--20724877
75
2.0
75
93
0
257
27
11
23
37
1.90
20728516--20728558
2
21.5
2
95
0
77
51
0
0
48
1.00
20728659--20728686
2
14.0
2
100
0
56
50
0
0
50
1.00
20728531--20728792
128
2.0
128
98
0
506
35
14
16
34
1.89
20730828--20730879
12
4.3
12
73
9
52
76
3
3
15
1.07
20731167--20731198
17
1.9
17
93
6
57
65
0
6
28
1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127