genome.fa.s656.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  105  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19473597--19473643	21	2.2	21	81	7	60	10	8	0	80	0.89
19473596--19473631	17	2.0	19	89	10	58	8	8	0	83	0.82
19482553--19482615	29	2.2	29	85	2	83	17	1	26	53	1.52
19483034--19483063	6	4.8	6	95	4	51	3	13	0	83	0.77
19483186--19483261	27	2.9	26	88	5	118	30	3	6	59	1.41
19483186--19483250	14	4.9	14	73	15	59	29	4	7	58	1.46
19484801--19485340	139	3.9	139	81	2	609	27	10	10	51	1.69
19485807--19485853	18	2.5	20	80	16	64	61	0	2	36	1.08
19485809--19485860	18	2.8	19	82	11	63	67	0	1	30	1.02
19489857--19489896	5	7.6	5	88	5	53	17	2	0	80	0.83
19490800--19490850	12	4.4	12	82	9	54	19	0	9	70	1.14
19490887--19491249	192	1.9	193	80	7	434	46	7	10	35	1.65
19491361--19491414	27	1.9	28	81	7	65	48	3	7	40	1.49
19498313--19498459	50	2.9	50	80	2	150	30	10	16	42	1.82
19498428--19498601	71	2.4	74	76	8	189	31	13	12	43	1.81
19498854--19499020	43	3.9	41	78	10	140	33	13	13	38	1.85
19498881--19499020	43	3.3	43	82	6	142	35	13	14	37	1.85
19499715--19499775	29	2.1	28	87	3	86	16	3	26	54	1.58
19500613--19500691	26	3.0	26	78	8	88	32	2	7	56	1.41
19502174--19502207	5	6.8	5	86	0	50	2	32	0	64	1.08
19502472--19502516	19	2.4	19	100	0	90	4	24	4	66	1.29
19504801--19504826	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19505118--19505191	29	2.6	29	82	6	96	43	9	4	43	1.56
19505421--19505456	11	3.4	11	92	7	65	27	0	0	72	0.85
19507153--19507177	2	12.5	2	100	0	50	52	0	0	48	1.00
19514599--19514631	14	2.3	15	89	5	50	27	0	9	63	1.24
19514614--19514806	58	3.3	58	82	4	244	36	7	5	50	1.54
19514492--19514748	132	2.0	129	83	7	331	35	6	6	52	1.53
19514785--19514833	16	3.0	16	75	3	53	32	2	0	65	1.04
19515761--19515826	5	11.0	6	73	20	50	77	3	1	18	0.98
19515768--19515810	21	2.1	20	87	12	61	79	4	0	16	0.90
19515768--19515827	28	2.1	28	82	11	70	78	3	1	16	0.97
19516009--19516236	85	2.7	85	83	4	291	41	22	12	23	1.88
19516004--19516236	127	1.8	126	85	5	326	42	22	12	22	1.87
19516009--19516262	42	6.0	42	82	9	250	41	22	12	24	1.87
19516541--19516888	114	3.1	114	91	2	574	34	16	14	35	1.88
19516977--19517098	38	3.1	38	67	15	104	36	17	10	36	1.84
19516954--19517226	79	3.4	79	90	0	420	33	17	11	37	1.86
19517012--19517067	21	2.7	21	80	2	69	37	14	8	39	1.77
19517091--19517139	21	2.4	20	82	3	62	36	16	10	36	1.82
19517091--19517146	20	2.7	21	83	2	69	35	17	8	37	1.82
19517170--19517465	21	14.0	21	71	11	167	36	13	9	39	1.78
19517212--19517396	100	1.8	104	84	5	261	36	16	8	38	1.79
19517081--19517369	142	2.0	143	86	0	400	34	17	10	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19517314--19517486	21	7.6	23	73	14	110	38	12	8	41	1.73
19517311--19517496	46	4.1	44	81	8	196	38	13	8	39	1.75
19518562--19518641	24	3.4	23	75	18	76	3	20	0	76	0.94
19518576--19518629	9	6.1	9	75	12	58	0	14	0	85	0.61
19518539--19518641	35	2.8	37	75	19	110	4	19	0	75	0.97
19518572--19518637	24	3.0	21	81	16	80	1	16	0	81	0.76
19519583--19519626	17	2.6	17	88	0	61	31	4	2	61	1.28
19519740--19519771	10	3.2	10	90	0	55	0	12	0	87	0.54
19519740--19519771	16	1.9	17	93	6	57	0	12	0	87	0.54
19520051--19520100	25	2.0	24	84	7	64	34	6	18	42	1.74
19520803--19521378	59	9.7	59	84	5	725	43	7	14	33	1.75
19523894--19524231	56	5.9	56	82	7	378	36	9	4	49	1.56
19523901--19524241	115	3.0	114	83	5	422	36	9	4	49	1.56
19524668--19524749	41	2.0	41	95	0	146	40	20	13	25	1.89
19525713--19525859	44	3.3	43	84	3	179	45	20	10	23	1.82
19526049--19526083	15	2.2	16	90	5	54	37	17	17	28	1.92
19526351--19526443	25	3.9	24	69	17	77	37	11	10	39	1.77
19526355--19526460	46	2.3	46	85	6	151	37	12	10	39	1.77
19526355--19526460	21	4.7	21	69	17	61	37	12	10	39	1.77
19526524--19526586	22	2.9	22	88	2	92	33	17	12	36	1.88
19526524--19526711	21	9.0	21	71	17	104	35	17	10	37	1.84
19526426--19526690	101	2.6	101	87	3	370	34	16	11	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19527862--19527961	9	10.7	9	77	16	105	10	14	0	76	1.03
19527844--19527961	18	7.1	16	70	18	73	9	15	0	75	1.04
19527862--19527961	29	3.5	29	83	10	118	10	14	0	76	1.03
19527931--19527973	19	2.4	17	81	11	59	11	23	0	65	1.25
19527862--19527947	20	4.5	20	78	12	101	10	12	0	76	1.01
19531848--19532028	60	3.0	59	77	10	195	33	12	6	48	1.67
19532005--19532202	59	3.4	56	80	9	200	36	9	4	49	1.54
19532025--19532201	59	3.1	57	82	5	230	37	9	3	49	1.54
19535302--19535346	19	2.3	20	85	11	58	77	11	0	11	0.99
19536194--19536260	5	12.8	5	74	22	50	79	4	0	16	0.90
19536193--19536233	15	2.7	15	85	7	57	80	2	0	17	0.82
19536192--19536261	6	12.0	6	76	14	67	78	4	0	17	0.90
19536192--19536261	18	4.0	16	81	17	77	78	4	0	17	0.90
19537235--19537296	17	3.6	17	81	12	56	33	27	1	37	1.67
19538360--19538427	34	2.0	34	97	0	127	26	13	5	54	1.61
19541041--19541323	59	4.6	58	77	11	255	46	7	12	33	1.69
19546525--19546594	22	3.3	21	68	8	61	34	8	20	37	1.83
19546624--19546662	20	2.0	20	84	0	51	41	15	15	28	1.87
19547132--19547402	87	3.2	82	86	9	357	25	12	19	42	1.86
19547132--19547369	129	1.8	129	90	1	379	25	12	19	42	1.86
19547132--19547402	42	6.4	41	84	8	339	25	12	19	42	1.86
19548741--19548786	12	4.0	11	83	8	56	71	2	15	10	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19548741--19548787	23	2.0	23	83	4	58	72	2	14	10	1.21
19548754--19548823	18	4.0	17	75	21	56	78	5	8	7	1.09
19548761--19548815	15	3.8	14	77	18	51	80	7	7	5	1.04
19548767--19548815	15	3.5	13	82	17	55	81	8	6	4	0.97
19550839--19550874	13	2.7	13	86	4	54	80	5	13	0	0.88
19551119--19551267	23	6.6	23	73	5	115	30	20	18	30	1.96
19551087--19551268	68	2.7	67	79	4	186	30	23	17	29	1.96
19551157--19551267	22	5.0	22	75	7	89	30	20	19	28	1.97
19551275--19551321	23	2.0	23	91	0	76	34	25	10	29	1.90
19552442--19552725	70	4.0	70	73	5	198	19	17	12	50	1.78
19552486--19552599	35	3.3	35	76	2	113	20	14	12	53	1.72
19552555--19552667	35	3.2	35	79	0	118	20	22	12	45	1.84
19552799--19552997	69	2.8	69	80	7	222	18	27	12	42	1.86
19552792--19552997	35	5.9	35	79	6	204	18	27	12	41	1.86
19553078--19553120	18	2.4	18	88	3	70	72	4	0	23	1.04
19554902--19554930	2	15.0	2	92	7	51	48	0	51	0	1.00
19554905--19554930	13	2.0	13	100	0	52	46	0	53	0	1.00
19555037--19555110	37	2.0	37	100	0	148	18	18	21	40	1.91
19555874--19555967	8	12.6	8	76	13	69	48	24	3	23	1.65
19555876--19555951	7	10.4	7	79	10	66	47	23	3	25	1.69
19555874--19555954	16	5.5	15	80	14	89	46	23	3	25	1.68
19555883--19556028	15	9.9	15	75	13	90	49	26	2	21	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19555930--19556054	44	2.8	43	80	12	137	49	25	3	21	1.64
19559191--19559238	22	2.2	22	85	7	62	33	27	10	29	1.90
19559385--19559452	23	3.0	23	82	6	68	27	22	14	35	1.93
19559405--19559452	23	2.1	23	92	0	78	25	22	16	35	1.95
19559543--19559600	22	2.6	23	77	5	64	31	20	8	39	1.83
19561177--19561243	19	3.1	22	70	29	54	13	5	7	73	1.24
19561267--19561418	61	2.5	62	80	13	156	46	11	8	34	1.70
19562372--19562477	31	3.5	31	81	13	98	58	1	0	38	1.15
19562410--19562519	40	2.7	41	79	9	111	58	0	1	39	1.15
19562432--19562524	39	2.3	38	80	8	105	62	1	2	34	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127