genome.fa.s656.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  28  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5976521--5976697	65	2.7	66	81	4	171	23	19	9	47	1.78
5976585--5976763	66	2.7	66	81	3	191	22	19	9	48	1.77
5976749--5976876	43	3.0	43	82	5	163	24	13	18	43	1.86
5978285--5978320	6	5.8	6	93	6	63	0	16	0	83	0.65
5978285--5978320	19	1.9	19	94	5	65	0	16	0	83	0.65
5978316--5978389	8	9.4	8	88	5	89	16	0	10	72	1.10
5978500--5978528	3	9.7	3	100	0	58	31	0	0	68	0.89
5978580--5978636	19	2.9	21	74	15	75	33	5	10	50	1.59
5982365--5982415	27	1.9	26	92	4	84	52	17	9	19	1.72
5983003--5983027	9	2.8	9	100	0	50	32	12	20	36	1.89
5983069--5983109	19	2.2	19	100	0	82	19	24	14	41	1.89
5985869--5986285	59	6.9	59	86	9	512	31	13	8	46	1.73
5987697--5987800	1	104.0	1	78	0	91	5	0	6	87	0.67
5987697--5987800	14	7.4	13	82	16	102	5	0	6	87	0.67
5987728--5987800	7	10.7	7	92	4	107	0	0	9	90	0.46
5987697--5987800	21	4.9	20	81	17	106	5	0	6	87	0.67
5987808--5988249	41	10.9	41	93	5	719	37	22	17	22	1.94
5987808--5988249	80	5.5	80	95	3	741	37	22	17	22	1.94
5987808--5988249	159	2.7	160	94	5	750	37	22	17	22	1.94
5989459--5989488	6	4.8	6	92	8	51	0	16	0	83	0.65
5989432--5989489	8	8.1	7	88	7	66	5	15	0	79	0.90
5989458--5989508	15	3.4	15	81	5	59	3	17	0	78	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5989465--5989515	15	3.3	15	81	13	59	5	19	0	74	1.02
5993327--5993600	58	4.7	57	90	2	422	33	13	7	44	1.72
5993327--5993600	115	2.4	114	90	4	424	33	13	7	44	1.72
5993363--5993728	127	3.0	124	86	6	432	31	12	7	47	1.69
5993602--5993726	58	2.1	60	92	2	209	31	12	8	48	1.71
5993686--5993778	43	2.2	43	90	7	145	33	15	5	46	1.68
5993712--5993940	62	3.8	58	83	10	241	34	13	6	44	1.71
5993729--5993940	60	3.5	60	89	8	310	33	15	7	43	1.74
5993628--5993838	105	2.0	101	87	9	302	32	14	7	45	1.72
5993729--5993947	57	3.7	58	88	8	284	33	14	7	44	1.73
5994399--5994443	19	2.4	19	85	7	56	24	22	33	20	1.97
5994465--5994514	26	1.9	26	88	8	75	18	24	26	32	1.97
6000078--6000128	27	1.9	26	92	4	84	52	17	9	19	1.72
6002680--6002739	10	6.3	10	74	16	56	78	0	10	11	0.97
6002680--6002739	20	3.1	20	81	13	72	78	0	10	11	0.97
6003739--6003910	41	4.1	41	93	1	281	23	16	24	34	1.95
6003918--6003975	7	8.7	7	79	9	52	84	12	1	1	0.78
6003919--6003978	10	5.9	10	77	16	61	85	11	1	1	0.76
6004185--6004262	21	3.5	21	65	14	50	28	1	5	65	1.22
6004164--6004314	83	1.8	81	81	8	189	29	0	5	64	1.20
6004143--6004281	74	1.9	72	80	11	158	25	1	5	66	1.22
6004252--6004312	20	3.2	18	81	13	61	32	0	3	63	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6005252--6005291	16	2.6	16	88	4	55	15	0	0	85	0.61
6005318--6005398	11	7.7	10	72	23	60	16	6	1	76	1.05
6005318--6005398	5	15.4	5	74	21	60	16	6	1	76	1.05
6005330--6005401	27	2.6	28	83	12	80	16	5	1	76	1.05
6005365--6005413	20	2.3	21	86	13	66	18	8	0	73	1.07
6005323--6005408	32	2.7	32	82	10	97	17	6	1	74	1.10
6005359--6005409	24	2.0	24	85	11	66	19	7	0	72	1.08
6005426--6006124	119	5.9	119	86	7	913	43	8	12	36	1.73
6005426--6006124	58	11.7	58	84	7	827	43	8	12	36	1.73
6005440--6006122	177	3.8	177	90	5	995	43	8	12	35	1.73
6016654--6016699	16	3.0	16	79	17	53	28	0	8	63	1.24
6017238--6017304	31	2.2	31	81	10	75	28	22	20	28	1.99
6017248--6017306	31	1.9	31	86	6	84	27	22	22	28	1.99
6017861--6018500	118	5.3	117	87	9	821	45	7	12	33	1.71
6017852--6018500	243	2.7	241	86	9	853	45	7	12	33	1.71
6022331--6022408	17	4.5	17	78	9	52	78	1	14	6	1.01
6022344--6022411	17	4.0	17	74	11	59	79	1	13	5	0.98
6023650--6023937	42	7.0	42	86	8	398	23	18	20	37	1.94
6023944--6024015	16	4.4	16	89	3	90	88	6	0	4	0.61
6023944--6024015	17	4.3	17	83	1	83	88	6	0	4	0.61
6023944--6024007	1	64.0	1	80	0	74	90	4	0	4	0.54
6024104--6024147	20	2.2	20	92	8	72	22	29	27	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6024211--6024329	16	7.2	17	70	16	56	29	0	6	63	1.19
6027938--6027968	14	2.2	14	94	0	53	80	3	0	16	0.83
6027999--6028174	59	3.0	57	84	9	237	33	14	8	43	1.75
6027999--6028406	119	3.3	120	71	12	364	36	11	9	42	1.73
6028183--6028213	14	2.2	14	94	0	53	80	3	3	12	0.95
6027928--6028462	249	2.2	247	89	6	827	41	8	9	40	1.69
6028246--6028414	58	2.8	60	82	9	229	33	12	8	45	1.73
6029514--6029556	3	14.3	3	90	9	70	67	0	0	32	0.91
6029515--6029556	16	2.5	18	92	7	63	66	0	0	33	0.92
6029613--6029652	17	2.4	17	87	8	55	82	0	17	0	0.67
6029613--6029653	18	2.4	17	87	4	55	82	0	17	0	0.66
6029823--6029883	24	2.5	24	81	5	70	6	0	11	81	0.85
6029845--6029888	12	3.8	12	79	11	56	0	0	11	88	0.51
6029846--6029888	22	2.0	22	90	0	68	0	0	11	88	0.52
6029895--6030305	41	10.0	41	94	3	679	36	23	17	22	1.94
6029895--6030305	83	5.0	82	95	3	679	36	23	17	22	1.94
6029895--6030305	124	3.3	123	93	4	679	36	23	17	22	1.94
6031532--6031581	9	5.8	9	79	11	52	8	12	0	80	0.92
6031532--6031562	8	3.9	8	95	0	53	9	9	0	80	0.90
6031540--6031590	19	2.7	18	76	8	57	5	13	0	80	0.89
6031540--6031606	27	2.5	27	82	4	73	5	16	0	77	0.95
6036495--6036544	21	2.4	22	74	16	52	46	0	4	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6038379--6038411	13	2.5	13	90	9	50	78	12	0	9	0.95
6044745--6044963	58	3.7	59	83	8	295	34	14	8	42	1.75
6045001--6045041	21	1.9	22	95	5	75	75	0	9	14	1.04
6044978--6045050	21	3.9	18	73	18	69	75	0	6	17	1.02
6045928--6045960	16	2.1	16	94	0	57	84	3	0	12	0.72
6046009--6046062	22	2.5	22	85	8	67	64	1	3	29	1.21
6046042--6046102	26	2.3	26	85	0	86	62	1	4	31	1.26
6046143--6046202	15	4.4	14	78	19	56	65	0	5	30	1.14
6046143--6046208	8	9.4	7	73	17	57	65	1	4	28	1.21
6046230--6046287	8	7.6	8	76	7	50	79	1	0	18	0.82
6046180--6046287	15	7.0	14	71	19	56	73	1	2	22	1.06
6046132--6046287	22	6.5	23	68	14	84	71	1	3	23	1.09
6046217--6046280	33	1.9	34	84	9	87	75	1	0	23	0.90
6046466--6046860	42	9.1	42	78	12	372	38	19	16	24	1.92
6046466--6046859	132	3.0	128	88	4	560	39	19	17	24	1.92
6046467--6046854	86	4.5	85	81	9	392	39	18	16	25	1.91
6047842--6047886	16	2.8	16	83	16	65	11	6	0	82	0.84
6047838--6047897	22	2.8	21	77	5	66	8	6	0	85	0.76
6058279--6058552	59	4.6	57	83	8	318	35	15	6	42	1.74
6058279--6058575	118	2.5	116	82	5	364	35	14	7	42	1.74
6058595--6058654	21	2.9	21	87	7	79	75	0	10	15	1.05
6059028--6059066	19	2.1	19	90	0	60	30	20	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6059191--6059233	19	2.3	19	84	8	52	44	6	13	34	1.72
6059200--6059243	19	2.3	19	96	0	79	40	4	15	38	1.68
6059517--6059546	8	3.9	8	91	8	53	90	0	0	10	0.47
6059518--6059546	15	1.9	15	100	0	58	89	0	0	10	0.48
6059595--6059643	22	2.3	22	86	10	66	63	2	6	28	1.30
6059696--6059729	10	3.4	10	88	11	52	82	0	17	0	0.67
6059736--6059855	7	17.3	7	73	18	60	66	0	4	28	1.15
6059760--6059794	15	2.5	15	90	9	56	68	0	5	25	1.11
6062012--6062044	13	2.5	13	90	9	50	78	15	0	6	0.93
6065470--6065526	1	57.0	1	80	0	60	3	7	0	89	0.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127