genome.fa.s656.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  33  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6844724--6844847	29	4.1	30	68	20	89	58	0	2	39	1.11
6844801--6844852	22	2.4	21	72	15	52	69	0	1	28	0.99
6855134--6855167	10	3.5	10	88	8	52	32	0	0	67	0.91
6855205--6855244	13	3.1	13	81	0	53	57	0	0	42	0.98
6855170--6855249	33	2.5	33	73	20	78	57	2	0	40	1.12
6856946--6856998	12	4.5	12	80	17	58	64	0	0	35	0.94
6856947--6857001	24	2.3	23	79	14	67	63	0	0	36	0.95
6859804--6859978	61	2.9	61	78	8	167	45	8	5	40	1.59
6860381--6860430	24	2.2	24	85	7	68	58	8	2	32	1.39
6862456--6862538	40	2.0	40	84	6	105	66	4	25	3	1.28
6871635--6871714	35	2.2	36	78	8	92	62	3	5	28	1.33
6873777--6873860	42	2.0	42	84	11	111	33	4	5	55	1.45
6873900--6874103	112	1.8	113	80	7	245	38	7	4	49	1.52
6875136--6875175	18	2.2	18	86	0	53	37	2	0	60	1.11
6876266--6876313	15	3.1	15	82	17	55	60	0	2	37	1.09
6880632--6880788	52	3.0	53	87	5	189	40	8	23	27	1.83
6881274--6881358	31	2.7	31	85	0	116	28	20	24	27	1.99
6881644--6881675	11	2.9	11	95	0	55	25	0	28	46	1.53
6881700--6881856	52	3.0	53	85	3	203	39	7	23	29	1.82
6883048--6883092	23	2.0	23	86	8	65	48	8	15	26	1.74
6887862--6887895	17	2.0	17	100	0	68	47	17	5	29	1.71
6889029--6889068	18	2.3	17	86	4	53	50	15	10	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6889332--6889579	112	2.2	111	78	8	243	35	10	5	49	1.59
6889456--6889540	42	2.1	40	82	6	100	36	16	3	43	1.65
6890728--6890767	18	2.2	18	86	0	53	37	2	0	60	1.11
6891858--6891898	17	2.6	16	85	14	59	58	0	0	41	0.98
6895927--6895989	2	31.5	2	100	0	126	0	50	0	49	1.00
6898232--6898270	20	2.0	20	94	0	69	15	5	5	74	1.17
6898271--6898301	15	2.1	15	100	0	62	45	6	12	35	1.68
6900860--6900886	12	2.2	12	100	0	54	66	0	7	25	1.17
6901254--6901278	2	12.5	2	100	0	50	48	0	0	52	1.00
6903715--6903753	19	2.0	20	85	14	55	71	17	0	10	1.12
6906491--6906544	25	2.2	25	89	0	81	40	12	11	35	1.79
6906890--6906976	21	4.2	20	77	10	68	36	6	11	44	1.67
6907018--6907088	22	3.2	22	76	7	81	35	2	8	53	1.46
6907146--6907185	20	2.0	20	85	9	55	52	0	5	42	1.23
6912142--6912184	21	2.2	20	87	8	61	34	0	2	62	1.08
6914972--6915011	21	2.0	20	85	14	55	67	15	0	17	1.23
6917287--6917318	10	3.2	10	95	0	55	50	6	0	43	1.27
6917411--6917538	21	6.0	21	72	8	71	35	7	10	46	1.67
6917547--6917644	21	4.6	21	73	5	79	36	6	7	50	1.55
6917547--6917651	22	4.9	21	74	5	84	36	5	7	50	1.55
6917709--6917748	20	2.0	20	85	9	55	52	0	5	42	1.23
6922611--6922663	11	4.6	11	77	9	52	52	1	0	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6922683--6922716	16	2.1	16	88	5	50	76	2	5	14	1.09
6922718--6922757	10	4.2	10	79	20	50	30	0	2	67	1.04
6926063--6926090	14	2.0	14	100	0	56	42	0	0	57	0.99
6930709--6930756	2	24.0	2	100	0	96	50	0	0	50	1.00
6931193--6931236	21	2.0	22	87	12	65	65	2	2	29	1.16
6931536--6931591	25	2.2	25	93	0	94	42	10	14	32	1.80
6931759--6931803	2	23.0	2	86	4	56	48	6	0	44	1.29
6933242--6933333	42	2.2	42	94	0	157	23	19	23	32	1.97
6938915--6938971	24	2.4	24	87	0	87	52	10	12	24	1.70
6939373--6939402	2	15.0	2	100	0	60	50	0	0	50	1.00
6939515--6939678	86	1.9	86	97	0	310	48	20	7	22	1.75
6941422--6941448	1	27.0	1	100	0	54	100	0	0	0	0.00
6942118--6942142	12	2.1	12	100	0	50	16	16	68	0	1.22
6943934--6944003	22	3.3	20	73	13	61	40	4	0	55	1.19
6952052--6952099	20	2.4	19	76	10	51	33	4	0	62	1.14
6952263--6952329	34	1.9	35	82	8	84	20	2	10	65	1.36
6952375--6952430	21	2.7	21	85	0	67	26	3	1	67	1.16
6952738--6952762	6	4.2	6	100	0	50	0	16	0	84	0.63
6954047--6954113	19	3.6	18	72	8	62	25	7	10	56	1.59
6954301--6954354	12	4.2	12	80	17	56	61	0	3	35	1.14
6962443--6962475	3	11.0	3	100	0	66	66	0	33	0	0.92
6963385--6963422	12	3.1	12	92	3	58	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6963385--6963432	22	2.0	25	84	11	66	41	2	0	56	1.11
6963443--6963489	25	1.9	24	91	4	76	38	0	0	61	0.96
6964518--6964560	22	2.0	22	90	0	68	72	4	6	16	1.24
6964929--6964959	14	2.2	14	94	0	53	41	0	3	54	1.16
6968411--6968455	20	2.3	19	80	3	54	66	0	4	28	1.11
6970754--6970790	18	2.1	18	94	0	65	27	24	24	24	2.00
6973354--6973394	13	3.2	13	82	0	55	39	0	0	60	0.96
6973542--6973569	2	14.0	2	100	0	56	50	0	0	50	1.00
6975485--6975530	24	1.9	24	86	8	67	36	2	2	58	1.22
6975717--6975757	19	2.1	20	86	4	57	34	4	0	60	1.18
6976542--6976608	30	2.2	30	91	0	107	29	10	5	53	1.59
6979546--6979647	43	2.4	43	93	0	168	54	7	7	29	1.57
6979581--6979652	15	4.9	15	69	19	62	56	8	5	29	1.51
6980425--6980485	24	2.5	24	75	5	59	60	1	3	34	1.23
6980655--6980701	24	1.9	24	86	4	67	55	2	2	40	1.24
6980645--6980701	24	2.4	24	82	8	64	56	1	1	40	1.20
6981269--6981311	22	1.9	23	90	4	70	37	0	2	60	1.10
6982989--6983031	12	3.8	11	82	14	52	30	0	0	69	0.88
6982998--6983022	13	1.9	13	100	0	50	28	0	0	72	0.86
6983016--6983058	22	2.0	20	82	8	50	37	2	0	60	1.10
6983112--6983153	21	2.0	21	95	0	75	45	9	14	30	1.77
6983201--6983232	12	2.6	13	85	14	50	75	0	0	25	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6984056--6984106	22	2.3	23	82	3	68	35	1	1	60	1.19
6987514--6987566	24	2.2	25	80	16	67	45	3	0	50	1.19
6990172--6990487	133	2.3	138	82	8	401	46	5	9	39	1.58
6990372--6990469	29	3.2	30	65	17	76	47	4	10	37	1.56
6990345--6990527	58	3.1	58	79	9	192	46	5	9	38	1.59
6990374--6990534	62	2.7	60	84	7	211	47	4	9	37	1.59
6991517--6991562	22	2.1	22	100	0	92	45	8	8	36	1.66
6992015--6992129	35	3.3	35	65	19	94	48	2	10	38	1.51
6991987--6992124	70	2.0	70	97	0	258	44	4	11	39	1.61
6992818--6992845	7	4.0	7	100	0	56	57	0	0	42	0.99
6995582--6995628	20	2.5	20	86	10	64	72	4	2	21	1.12
6998366--6998416	15	3.5	14	76	7	57	58	1	0	39	1.09
6998366--6998420	22	2.5	22	74	8	58	56	1	0	41	1.10
7001466--7001498	14	2.3	15	89	5	50	42	3	0	54	1.15
7003777--7003805	4	7.5	4	92	7	51	0	0	24	75	0.80
7007931--7008173	79	3.0	78	83	5	297	18	11	17	52	1.73
7019642--7019681	21	1.9	21	89	0	62	37	10	2	50	1.50
7021353--7021385	16	2.1	17	88	11	52	63	6	12	18	1.48
7021581--7021625	22	2.0	22	87	8	65	51	0	0	48	1.00
7022814--7022854	21	2.0	21	90	0	64	78	7	9	4	1.10
7023410--7023454	22	2.0	22	86	4	63	73	4	15	6	1.21
7024304--7024365	12	5.0	13	71	13	51	45	0	1	53	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7024304--7024364	23	2.6	22	80	17	61	44	0	1	54	1.10
7024621--7024649	13	2.3	13	94	5	51	48	0	0	51	1.00
7030380--7030520	42	3.5	38	72	18	99	53	2	1	42	1.21
7031115--7031157	19	2.3	19	88	4	61	41	0	2	55	1.12
7033162--7033194	17	1.9	17	88	11	50	36	0	0	63	0.95
7033151--7033202	27	1.9	27	84	7	70	36	1	0	61	1.07
7040074--7040106	8	4.2	8	92	7	59	60	0	0	39	0.97
7040074--7040106	15	2.1	16	94	5	59	60	0	0	39	0.97
7040318--7040359	21	2.0	21	90	9	68	54	2	0	42	1.13
7050578--7050718	17	8.2	17	70	13	56	36	17	12	34	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127