genome.fa.s656.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  74  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14275974--14276097	28	4.4	28	79	5	97	50	28	1	20	1.58
14275967--14276115	29	5.2	28	76	8	95	48	28	1	21	1.58
14276088--14276144	16	3.6	16	70	13	55	43	29	1	24	1.64
14276073--14276145	31	2.4	31	86	2	94	47	28	1	21	1.59
14276135--14276187	21	2.5	21	80	14	65	52	32	1	13	1.51
14277550--14277576	11	2.5	11	100	0	54	44	0	0	55	0.99
14280879--14280922	22	2.0	22	81	0	52	70	2	18	9	1.24
14283472--14283787	155	2.0	155	96	0	587	37	20	16	25	1.93
14290193--14290626	49	9.0	50	78	7	387	26	10	20	43	1.83
14290202--14290625	98	4.4	97	78	9	438	26	10	19	43	1.83
14290871--14290917	18	2.7	18	87	9	62	27	0	0	72	0.85
14290868--14290925	25	2.3	25	84	3	71	27	0	0	72	0.85
14290890--14290924	18	1.9	18	88	0	52	25	0	0	74	0.82
14292126--14292520	206	1.9	203	79	9	444	45	8	10	35	1.68
14294432--14294525	25	3.4	25	68	25	64	48	7	6	37	1.57
14294406--14294638	59	4.0	56	78	15	231	47	6	9	36	1.61
14294739--14294917	79	2.3	79	87	6	256	48	6	10	35	1.63
14294525--14294859	133	2.6	130	80	8	360	51	5	7	35	1.55
14297385--14297433	21	2.3	21	82	10	64	73	0	2	24	0.94
14297410--14297443	14	2.3	15	90	5	52	79	0	2	17	0.86
14298190--14298226	18	2.1	18	89	0	56	62	0	2	35	1.10
14299579--14299604	9	2.9	9	100	0	52	92	0	7	0	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14300996--14301028	10	3.4	10	91	4	50	90	9	0	0	0.44
14301469--14301528	25	2.4	24	81	13	68	48	1	5	45	1.34
14302048--14302076	14	2.1	14	100	0	58	44	0	27	27	1.54
14305027--14305055	5	5.8	5	100	0	58	82	0	0	17	0.66
14305387--14305426	13	3.1	14	82	13	50	47	0	0	52	1.00
14305384--14305425	15	2.8	15	78	10	50	50	0	0	50	1.00
14307235--14307287	3	17.7	3	96	0	97	32	1	0	66	1.03
14308028--14308067	21	2.0	20	85	5	53	32	10	2	55	1.47
14308195--14308278	20	4.2	20	71	14	59	30	5	7	55	1.51
14308410--14309179	219	3.5	213	74	12	609	30	10	6	53	1.59
14309383--14310183	222	3.7	215	76	10	689	29	10	6	53	1.60
14308441--14310506	929	2.2	937	80	5	2243	30	10	6	52	1.62
14310586--14310623	17	2.2	18	85	4	51	31	5	2	60	1.33
14308700--14311145	929	2.6	925	78	7	2287	30	11	6	51	1.63
14310707--14311213	221	2.3	220	78	3	522	30	14	6	48	1.67
14313498--14313557	24	2.5	24	79	10	61	21	3	3	71	1.15
14313494--14313682	4	46.8	4	66	16	54	26	4	3	65	1.26
14313534--14313674	75	1.9	75	81	14	175	28	4	3	63	1.29
14313619--14313713	22	4.5	22	81	9	99	29	5	0	65	1.14
14313619--14313707	41	2.1	41	87	2	124	30	5	0	64	1.17
14314040--14314104	31	2.1	32	88	2	96	23	13	16	46	1.83
14314654--14314927	59	4.7	58	88	4	408	41	6	13	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14314654--14314922	117	2.3	118	92	3	445	42	5	13	39	1.68
14318133--14318178	15	3.1	15	96	0	83	19	28	6	45	1.75
14325817--14325843	12	2.2	12	100	0	54	7	0	0	92	0.38
14326460--14326622	40	4.1	40	86	5	197	22	14	22	40	1.90
14326466--14326657	84	2.3	83	83	8	225	24	15	22	38	1.92
14326476--14326657	40	4.4	40	85	5	170	24	15	21	37	1.93
14326516--14326701	42	4.4	43	82	9	165	24	15	21	38	1.92
14326587--14326717	45	3.0	45	80	5	126	24	12	19	42	1.87
14326948--14327072	4	32.2	4	72	9	73	30	3	3	63	1.26
14326937--14326979	12	3.5	12	87	3	50	30	2	0	67	1.03
14326948--14327062	18	6.4	19	71	18	86	30	2	3	63	1.24
14326960--14327070	42	2.6	40	83	8	114	29	3	3	63	1.29
14326937--14327070	22	6.2	22	76	13	109	30	3	2	62	1.27
14327008--14327091	42	2.0	42	86	4	116	32	5	0	61	1.20
14327982--14328128	76	1.9	76	91	2	242	41	5	14	38	1.69
14331900--14331998	27	3.4	26	69	24	74	36	10	18	35	1.84
14336338--14336393	16	3.4	16	78	7	58	5	10	7	76	1.14
14336430--14336481	25	2.1	25	100	0	104	42	26	11	19	1.85
14338963--14338998	17	2.1	18	89	5	56	58	0	5	36	1.22
14339808--14339865	21	2.7	23	82	15	63	17	1	3	77	0.99
14340925--14340961	8	4.5	8	90	6	56	81	0	0	18	0.70
14342506--14342552	24	2.0	24	86	0	67	27	14	8	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14345441--14345491	10	5.5	10	77	15	56	82	0	11	5	0.83
14345448--14345515	13	5.5	12	76	11	66	83	0	10	5	0.79
14345448--14345523	10	7.5	10	74	12	57	81	0	11	6	0.86
14345440--14345557	43	2.7	44	75	16	109	77	0	15	7	0.99
14345432--14345546	17	7.1	17	75	17	95	78	0	13	7	0.96
14346651--14346731	22	3.8	21	78	4	90	38	8	12	40	1.74
14347150--14347181	15	2.1	15	94	0	55	25	9	18	46	1.79
14347264--14347699	44	9.8	44	80	9	361	25	11	17	46	1.81
14347279--14347699	87	4.8	88	78	7	261	25	11	17	46	1.81
14347928--14347971	13	2.9	15	80	19	56	18	0	4	77	0.94
14347932--14347963	14	2.3	15	89	10	50	18	0	3	78	0.89
14353546--14353607	4	16.5	4	74	12	51	17	4	1	75	1.05
14353546--14353620	37	2.0	37	89	5	116	18	6	1	73	1.12
14359411--14359469	15	4.0	15	72	12	59	79	1	16	1	0.89
14359418--14359474	29	1.9	31	89	7	91	78	3	15	1	0.96
14359417--14359467	14	3.6	13	74	25	50	80	1	15	1	0.89
14359420--14359513	25	3.8	24	71	10	73	74	4	18	3	1.12
14365026--14365074	20	2.5	20	83	12	57	51	4	0	44	1.20
14366559--14366584	10	2.6	10	100	0	52	26	23	23	26	2.00
14367607--14367645	20	2.0	19	85	5	51	46	12	7	33	1.71
14381047--14381357	156	2.0	155	85	1	426	29	24	9	36	1.87
14384041--14384234	59	3.3	59	82	3	207	21	3	19	56	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14388165--14388240	31	2.5	31	84	4	91	56	14	5	23	1.58
14388358--14388418	22	2.7	22	89	2	95	59	9	3	27	1.45
14389527--14390346	53	15.4	53	75	8	461	38	15	16	29	1.89
14389527--14390231	71	9.9	70	74	7	325	39	15	16	28	1.89
14389527--14390361	18	46.9	18	77	2	515	38	15	16	29	1.89
14390420--14390520	45	2.2	44	86	8	132	43	8	8	38	1.67
14390420--14390535	45	2.6	45	77	14	130	42	9	8	39	1.68
14390651--14390708	22	2.6	22	81	15	66	39	8	8	43	1.66
14391184--14391322	71	2.0	70	86	1	197	43	14	13	28	1.84
14392090--14392119	11	2.6	12	94	5	53	0	13	0	86	0.57
14392766--14392805	16	2.6	15	88	4	53	0	10	2	87	0.63
14396496--14396991	144	3.5	140	79	7	409	40	14	14	29	1.86
14396636--14396991	144	2.5	144	82	5	432	41	14	14	30	1.86
14397706--14397804	35	2.8	36	78	9	121	55	18	15	11	1.68
14397673--14397841	71	2.4	70	80	9	184	52	16	16	14	1.75
14397708--14397933	36	6.3	35	74	12	131	51	13	17	16	1.76
14397952--14398025	36	2.1	36	82	10	89	55	12	17	14	1.69
14397973--14398091	36	3.5	35	75	18	133	56	12	15	15	1.68
14398115--14398211	36	2.7	35	76	6	95	55	15	12	16	1.69
14398041--14398241	108	1.9	108	81	6	246	53	12	16	17	1.73
14398184--14398353	36	4.8	36	79	2	119	55	12	15	16	1.70
14398333--14398519	35	5.3	35	76	11	141	46	16	21	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14398500--14398560	18	3.2	17	72	20	50	50	6	22	19	1.70
14398767--14398871	49	2.1	49	89	0	156	48	22	18	10	1.78
14398816--14399677	36	24.4	36	71	10	289	50	15	17	16	1.78
14399117--14399375	106	2.4	106	82	3	279	52	17	16	13	1.75
14399138--14399501	107	3.4	107	78	6	315	51	17	16	14	1.77
14399574--14399704	35	3.7	36	79	5	115	50	9	21	18	1.75
14399647--14399726	35	2.3	35	91	0	124	46	6	26	21	1.75
14402613--14402669	25	2.3	25	100	0	114	36	15	0	47	1.46
14407558--14408064	278	1.8	278	92	0	861	40	19	16	23	1.91
14408626--14409007	145	2.6	143	81	6	414	44	12	12	30	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127