genome.fa.s656.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  53  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10504374--10504416	20	2.2	20	86	0	59	62	2	0	34	1.08
10504374--10504416	10	4.3	10	84	0	50	62	2	0	34	1.08
10504497--10504564	21	3.4	20	74	15	61	39	5	2	51	1.41
10504495--10504572	39	2.0	39	87	5	113	37	5	5	52	1.46
10504511--10504572	19	3.2	19	81	4	79	35	4	4	54	1.43
10504583--10504626	21	2.1	21	83	8	54	29	2	15	52	1.55
10504753--10504811	19	3.0	20	80	7	66	45	1	1	50	1.21
10504751--10504813	10	6.3	10	80	7	74	42	1	1	53	1.19
10504759--10504823	19	3.3	18	74	16	58	43	1	3	52	1.26
10507689--10507729	21	1.9	22	95	5	75	31	7	0	60	1.24
10507960--10508028	23	3.1	22	75	12	79	43	8	2	44	1.50
10507918--10508033	43	2.7	43	85	4	137	41	10	4	43	1.58
10507962--10508029	20	3.2	21	66	16	50	45	8	2	42	1.50
10507830--10508150	173	1.8	175	85	2	450	43	10	7	38	1.67
10507960--10508391	131	3.3	132	78	4	390	43	10	6	39	1.65
10508092--10508406	132	2.4	132	77	2	330	42	10	6	40	1.66
10508597--10508660	30	2.1	30	88	5	94	34	3	17	45	1.64
10508894--10508961	31	2.2	31	97	0	127	26	10	11	51	1.70
10509494--10509652	64	2.5	64	80	2	176	38	10	10	40	1.74
10510888--10510924	17	2.2	17	90	0	56	13	0	2	83	0.74
10511923--10511969	18	2.8	16	87	9	58	14	0	4	80	0.85
10511930--10511984	18	3.2	17	77	15	51	20	1	7	70	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10513690--10513777	16	5.4	16	73	8	52	39	7	7	44	1.63
10514183--10514321	58	2.4	59	82	7	169	40	16	5	37	1.73
10517441--10517471	13	2.4	13	94	0	53	25	6	12	54	1.62
10518136--10518182	25	1.9	24	83	12	60	68	2	2	27	1.13
10518311--10518372	16	3.5	17	80	8	63	54	1	0	43	1.09
10518331--10518372	19	2.2	19	87	8	59	52	2	0	45	1.13
10518676--10518704	14	2.0	15	93	6	51	34	0	0	65	0.93
10519838--10519882	14	3.0	15	80	9	56	51	11	0	37	1.38
10520470--10520507	17	2.2	17	95	0	67	18	23	13	44	1.85
10526275--10526462	92	2.1	91	85	4	254	25	19	17	37	1.93
10530020--10530087	31	2.2	31	100	0	136	33	29	5	30	1.81
10530037--10530088	15	3.4	15	70	15	52	36	30	3	28	1.75
10531305--10531352	21	2.2	22	92	3	80	52	0	2	45	1.12
10531626--10531658	14	2.4	14	85	5	50	54	3	0	42	1.15
10533194--10533225	16	2.1	16	94	5	57	78	0	0	21	0.76
10533530--10533581	23	2.2	23	82	3	68	44	0	3	51	1.19
10535819--10535859	15	2.9	15	86	10	52	60	0	0	39	0.96
10538096--10538138	20	2.2	20	95	0	77	32	2	48	16	1.58
10538739--10538772	8	4.5	8	85	14	54	67	0	0	32	0.91
10545167--10545229	29	2.1	31	91	5	103	44	14	6	34	1.70
10548655--10549126	239	1.9	242	92	3	788	33	17	22	26	1.96
10562900--10562971	33	2.2	33	85	9	94	40	0	1	58	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10563061--10563102	15	2.9	15	78	3	50	52	4	0	42	1.22
10567554--10567621	29	2.3	30	80	7	77	42	14	4	38	1.66
10578498--10578591	47	2.0	47	85	4	127	26	29	19	24	1.98
10581383--10581421	3	13.3	3	94	5	71	69	0	30	0	0.89
10582617--10582651	18	1.9	18	88	0	52	28	28	0	42	1.56
10584698--10584754	30	1.9	30	85	0	78	45	0	1	52	1.11
10584727--10584778	22	2.5	22	90	6	81	50	0	1	48	1.12
10587952--10588010	29	2.2	25	76	21	66	40	0	0	59	0.97
10588230--10588468	61	3.9	60	77	7	207	41	5	14	39	1.68
10588249--10588308	25	2.3	26	80	5	68	40	3	15	41	1.63
10588357--10588495	61	2.3	60	83	7	156	43	4	13	38	1.64
10588660--10588710	16	3.1	16	78	16	50	39	1	3	54	1.30
10601128--10601178	26	2.0	26	100	0	102	52	11	15	19	1.73
10603706--10603924	43	5.0	43	78	11	214	42	15	16	25	1.88
10603716--10603910	42	4.5	41	78	10	160	41	16	15	26	1.88
10603893--10603985	43	2.2	43	84	0	114	37	17	22	22	1.94
10604781--10605033	90	2.8	90	74	8	226	36	18	9	35	1.83
10607446--10607477	16	2.0	16	100	0	64	18	25	12	43	1.85
10607691--10607721	2	15.5	2	93	0	53	45	0	3	51	1.17
10607689--10607724	8	4.5	8	92	0	54	41	0	8	50	1.33
10610750--10610791	22	1.9	22	85	9	59	73	2	7	16	1.15
10610768--10610796	12	2.3	13	94	5	51	79	0	6	13	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10616403--10616444	3	14.0	3	94	0	75	33	0	2	64	1.07
10617600--10617654	27	2.0	27	100	0	110	41	14	10	32	1.81
10617607--10617664	27	2.3	26	88	8	84	44	15	10	29	1.79
10617826--10617859	10	3.4	10	91	0	59	61	0	0	38	0.96
10617984--10618008	12	2.1	12	100	0	50	60	0	8	32	1.26
10620067--10620091	13	1.9	13	100	0	50	36	0	0	64	0.94
10630281--10630334	3	18.0	3	100	0	108	33	0	0	66	0.92
10634311--10634365	25	2.2	26	83	3	67	47	3	12	36	1.59
10638602--10638649	21	2.3	21	89	3	71	14	0	10	75	1.06
10638616--10638691	35	2.2	33	79	9	80	17	1	9	72	1.17
10638896--10638974	22	3.5	22	89	5	106	29	20	21	29	1.98
10638960--10639231	88	3.1	88	85	2	332	39	16	20	22	1.92
10639132--10639340	109	1.9	110	86	2	296	37	17	22	22	1.94
10639043--10639525	197	2.4	198	82	2	578	38	16	21	22	1.93
10639405--10639450	22	2.1	22	91	0	74	32	17	21	28	1.96
10639319--10639636	110	2.9	110	81	0	366	38	15	21	23	1.92
10639545--10639723	88	2.0	88	85	2	243	39	17	19	22	1.92
10639727--10639780	22	2.5	22	81	0	63	29	11	29	29	1.91
10639627--10640005	132	2.9	132	87	1	519	39	15	22	22	1.92
10639848--10639912	22	3.0	22	79	4	60	33	12	24	29	1.92
10639869--10640134	110	2.4	109	82	2	302	37	15	21	25	1.93
10640090--10640138	22	2.2	22	88	0	71	32	12	20	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10640443--10640530	41	2.1	41	87	8	126	32	11	19	36	1.87
10642239--10642297	20	3.0	19	83	14	75	0	10	6	83	0.82
10642252--10642288	17	2.2	16	90	4	56	0	10	0	89	0.49
10642263--10642288	11	2.4	11	100	0	52	0	7	0	92	0.39
10642255--10642295	17	2.3	19	83	8	50	0	9	4	85	0.73
10642855--10642886	11	2.9	11	100	0	64	0	9	0	90	0.45
10646656--10646733	26	3.0	26	90	0	129	37	16	15	30	1.90
10648826--10648869	16	2.8	16	86	6	54	15	4	31	47	1.66
10650304--10650345	22	2.0	21	85	4	57	4	4	7	83	0.91
10650304--10650358	29	2.0	27	85	7	74	9	3	5	81	0.95
10650356--10650380	13	1.9	13	100	0	50	12	0	16	72	1.13
10650591--10650638	14	3.4	14	82	5	51	72	4	4	18	1.17
10652745--10652781	12	3.2	12	85	11	51	43	0	0	56	0.99
10654489--10654535	18	2.6	17	78	12	58	59	0	0	40	0.97
10655400--10655434	18	2.1	18	89	10	56	74	0	0	25	0.82
10656235--10656276	18	2.3	19	91	4	68	54	7	0	38	1.28
10656459--10656523	19	3.5	19	77	8	62	55	9	1	33	1.41
10656498--10656622	64	1.9	65	81	1	153	51	8	2	38	1.45
10656498--10656622	32	3.9	33	75	5	130	51	8	2	38	1.45
10659468--10659498	2	15.5	2	93	0	53	51	3	0	45	1.17
10660559--10660588	14	2.1	15	93	6	53	63	0	30	6	1.20
10662891--10662927	18	2.1	18	89	0	56	21	32	5	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10663482--10663554	37	2.0	37	83	0	92	67	6	8	17	1.39
10679516--10679540	2	12.5	2	100	0	50	0	48	0	52	1.00
10679540--10679571	2	17.0	2	87	12	50	53	0	0	46	1.00
10680004--10680051	3	16.0	3	100	0	96	66	0	0	33	0.92
10681061--10681112	21	2.4	21	84	9	61	46	1	3	48	1.31
10681060--10681111	20	2.4	22	81	9	63	48	1	3	46	1.31
10681567--10681617	26	2.0	26	88	0	75	35	23	17	23	1.95
10683398--10683424	2	13.5	2	100	0	54	51	0	0	48	1.00
10687988--10688032	19	2.4	19	85	10	58	0	13	4	82	0.82
10690309--10690339	15	2.1	15	93	0	53	12	3	3	80	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127