genome.fa.s656.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  30  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6235960--6236011	25	2.2	24	83	10	63	48	5	0	46	1.26
6237837--6237870	12	2.8	12	86	0	50	44	2	0	52	1.16
6238200--6238238	18	2.0	20	85	9	55	51	10	2	35	1.50
6238485--6238517	2	16.5	2	93	0	57	48	0	0	51	1.00
6242061--6242094	17	2.0	17	100	0	68	41	17	11	29	1.85
6243305--6243347	21	2.0	22	82	13	54	34	16	0	48	1.46
6243678--6243736	26	2.3	26	81	0	64	33	5	0	61	1.18
6258644--6258680	19	1.9	19	88	0	56	32	0	0	67	0.91
6259316--6259371	22	2.5	22	83	13	71	50	0	1	48	1.11
6259751--6259792	16	2.6	16	78	14	50	66	0	0	33	0.92
6260014--6260061	21	2.3	20	72	10	51	75	4	8	12	1.18
6260276--6260315	19	2.0	20	85	4	55	67	2	2	27	1.16
6260276--6260314	20	2.0	20	84	0	51	69	2	2	25	1.14
6260278--6260365	16	5.2	17	76	14	69	76	2	1	20	0.97
6260307--6260365	16	3.8	15	82	8	73	81	1	0	16	0.78
6260935--6260983	24	2.0	24	88	0	71	46	0	2	51	1.12
6268655--6268713	20	3.2	19	78	19	63	33	0	3	62	1.12
6268768--6268809	15	2.8	15	85	7	50	52	2	0	45	1.13
6268729--6268818	19	4.9	18	70	22	62	52	3	1	43	1.25
6268730--6268806	37	2.2	35	82	11	95	49	3	1	45	1.28
6268777--6268823	23	2.0	24	88	12	71	53	4	0	42	1.20
6269475--6269553	27	2.9	28	75	22	94	44	3	0	51	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6272811--6272844	16	2.2	15	89	5	50	38	0	0	61	0.96
6273254--6273286	17	1.9	17	93	0	57	42	9	3	45	1.51
6273844--6273900	29	1.9	30	89	3	89	61	0	1	36	1.07
6275786--6275811	12	2.2	12	100	0	52	0	0	7	92	0.39
6277665--6277717	21	2.4	23	81	9	65	66	3	3	26	1.26
6281195--6281315	61	2.0	61	100	0	242	27	14	14	42	1.85
6287224--6287253	2	15.0	2	100	0	60	50	0	0	50	1.00
6288518--6288565	24	2.0	24	84	8	62	68	2	0	29	1.01
6289052--6289132	38	2.1	38	81	4	92	76	1	3	18	1.00
6289052--6289132	7	10.7	7	70	19	56	76	1	3	18	1.00
6289340--6289380	19	2.1	20	90	4	66	56	0	14	29	1.39
6293648--6293906	130	2.0	129	97	0	491	45	14	15	24	1.84
6295296--6295355	27	2.2	29	80	14	74	43	0	3	53	1.17
6295309--6295356	14	3.5	13	75	10	51	39	0	4	56	1.19
6296001--6296146	49	3.0	48	78	12	158	45	1	3	50	1.27
6297451--6297489	20	2.0	20	94	0	69	38	15	20	25	1.92
6298969--6299000	2	16.0	2	93	0	55	50	3	0	46	1.17
6300318--6300404	30	3.0	28	80	8	95	58	4	1	35	1.26
6300341--6300399	26	2.2	27	81	3	66	55	6	1	35	1.36
6304617--6304661	14	3.3	13	84	9	63	0	17	6	75	1.01
6305456--6305509	26	2.1	26	92	0	90	51	7	3	37	1.48
6307344--6307414	35	2.0	35	94	0	124	63	8	9	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6313658--6313690	16	2.1	16	94	0	57	48	30	0	21	1.50
6319566--6319620	29	1.9	29	85	3	76	54	0	0	45	0.99
6320291--6320352	24	2.8	22	81	13	65	58	0	0	41	0.98
6321975--6322035	27	2.3	27	97	0	113	44	11	9	34	1.74
6324753--6324844	45	2.0	45	95	0	166	29	25	13	32	1.93
6326686--6326784	50	1.9	53	83	8	132	38	1	5	55	1.29
6330128--6330377	128	2.0	128	86	4	353	34	12	22	30	1.91
6332095--6332142	21	2.3	21	96	0	87	60	0	27	12	1.32
6335511--6336296	406	1.9	404	90	2	1245	36	18	14	30	1.91
6339537--6339584	22	2.2	22	81	7	62	47	0	2	50	1.12
6345321--6345364	6	7.5	6	87	5	63	0	52	13	34	1.41
6345331--6345363	17	1.9	17	100	0	66	0	48	18	33	1.48
6346469--6346494	2	13.0	2	100	0	52	50	0	0	50	1.00
6347093--6347139	16	2.9	17	82	14	55	51	0	0	48	1.00
6347094--6347129	18	1.9	18	88	5	54	52	0	0	47	1.00
6350536--6350732	97	2.0	97	85	1	261	30	21	18	28	1.97
6354144--6354195	22	2.4	23	84	9	65	80	3	15	0	0.85
6360948--6361011	29	2.2	30	80	11	78	51	3	1	43	1.26
6360948--6361011	15	4.3	15	69	16	53	51	3	1	43	1.26
6360982--6361028	23	2.0	23	84	8	60	53	6	2	38	1.39
6361695--6361754	28	2.1	28	96	0	111	28	10	0	61	1.28
6367219--6367252	14	2.5	13	86	9	50	41	11	0	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6367424--6367532	54	2.0	55	80	8	125	44	7	9	38	1.64
6373978--6374030	22	2.4	22	90	0	79	47	1	9	41	1.47
6373978--6374042	22	3.0	22	83	0	67	47	3	9	40	1.51
6374153--6374215	22	2.8	23	76	7	67	50	1	6	41	1.37
6374155--6374237	11	7.5	11	70	5	60	49	2	4	43	1.37
6374243--6374301	22	2.8	20	78	14	55	57	5	6	30	1.46
6374336--6374396	22	2.8	22	82	7	72	52	6	6	34	1.53
6374565--6374623	22	2.7	22	81	0	64	44	1	13	40	1.54
6374564--6374623	11	5.5	11	72	7	50	43	1	13	41	1.54
6374645--6374721	22	3.5	22	73	7	75	48	9	6	36	1.61
6374733--6374815	22	3.8	22	81	0	76	44	12	7	36	1.69
6375113--6375188	23	3.4	22	81	3	89	55	3	6	34	1.44
6375203--6375338	45	3.0	43	74	17	118	48	7	8	36	1.61
6375153--6375366	22	9.6	22	71	14	116	50	7	7	35	1.58
6375432--6375474	21	2.0	22	82	13	54	48	2	9	39	1.48
6375440--6375530	22	4.2	21	73	9	67	43	3	10	41	1.56
6375549--6375677	66	2.0	66	80	6	145	45	5	10	37	1.62
6375601--6375685	22	3.9	22	76	3	73	43	4	12	38	1.64
6375686--6375747	22	2.8	22	76	13	65	43	4	8	43	1.55
6376010--6376058	20	2.4	21	80	16	59	34	10	14	40	1.79
6375969--6376061	21	4.5	21	74	15	86	40	10	8	39	1.71
6382749--6382860	41	2.7	41	88	1	152	47	8	8	35	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6383533--6383599	22	3.0	23	78	8	75	17	10	5	65	1.43
6389157--6389234	39	2.0	39	92	0	129	17	12	3	65	1.41
6389758--6389800	22	2.0	22	90	4	70	46	11	6	34	1.67
6393713--6393756	22	2.0	22	90	0	70	43	11	11	34	1.77
6394126--6394332	109	1.9	109	90	2	335	40	15	17	26	1.90
6398784--6398828	16	2.9	16	80	9	58	33	0	0	66	0.92
6408991--6409061	37	1.9	37	97	0	133	40	25	14	19	1.89
6411722--6411771	25	2.1	24	85	7	66	56	8	18	18	1.65
6411916--6411959	22	2.0	22	90	0	70	43	11	11	34	1.77
6412329--6412535	109	1.9	109	90	2	335	40	16	17	26	1.90
6417478--6417515	16	2.3	17	90	4	60	34	0	0	65	0.93
6417470--6417524	27	2.0	27	86	6	76	30	0	0	69	0.89
6417480--6417521	14	2.8	15	82	10	50	33	0	0	66	0.92
6419896--6419930	17	2.1	17	88	0	52	65	0	0	34	0.93
6427617--6427687	37	1.9	37	97	0	133	40	25	12	21	1.88
6430725--6430757	15	2.2	15	89	10	50	3	18	0	78	0.87
6431171--6431222	20	2.5	20	79	14	61	38	1	0	59	1.08
6432674--6432720	20	2.3	20	88	0	76	8	23	0	68	1.17
6433960--6434043	44	1.9	44	85	0	114	46	1	4	47	1.31
6434974--6435018	18	2.5	19	76	20	51	60	0	4	35	1.17
6435263--6435323	29	2.2	29	82	5	81	45	6	3	44	1.46
6437620--6437651	8	4.0	8	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6440166--6440191	2	13.0	2	100	0	52	50	0	0	50	1.00
6446028--6446084	24	2.4	23	77	5	60	47	3	5	43	1.43
6448057--6448119	31	2.1	29	82	5	72	46	4	3	46	1.40
6464802--6464845	15	2.9	15	83	6	54	54	4	0	40	1.21
6464900--6464927	14	2.0	14	100	0	56	57	0	0	42	0.99
6464912--6464960	26	1.9	26	87	4	73	57	0	0	42	0.99
6465892--6465951	13	4.5	13	72	2	57	45	1	0	53	1.10
6467374--6467418	24	1.9	23	86	4	63	40	22	13	24	1.90
6472178--6472237	30	2.1	28	87	6	84	53	0	3	43	1.17
6472178--6472248	28	2.4	30	86	6	92	53	1	2	42	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127