genome.fa.s656.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  107  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19838257--19838302	22	2.0	23	87	4	67	50	0	0	50	1.00
19838320--19838384	32	2.1	31	85	2	85	53	0	0	46	1.00
19845492--19845545	14	4.1	13	77	18	58	1	12	7	77	1.05
19845494--19845538	22	2.0	22	83	8	56	2	11	4	82	0.91
19845492--19845548	25	2.3	25	81	6	71	1	12	7	78	1.01
19845517--19845556	14	2.9	13	85	10	53	0	12	12	75	1.06
19848331--19848355	12	2.1	12	100	0	50	68	0	8	24	1.16
19850546--19850609	23	2.8	22	79	11	67	10	3	6	79	1.02
19850999--19851053	17	3.2	17	83	16	62	7	0	9	83	0.81
19850999--19851072	22	3.2	22	83	9	78	8	1	9	81	0.94
19851243--19851470	104	2.2	102	85	2	294	33	14	15	36	1.88
19851444--19851514	22	3.2	22	78	4	72	29	12	21	36	1.90
19851739--19851796	22	2.6	22	83	5	73	34	10	20	34	1.87
19851756--19851808	22	2.4	21	84	9	70	33	13	22	30	1.92
19851344--19851977	148	4.3	147	77	4	571	34	14	15	35	1.88
19852959--19852989	15	2.1	15	93	0	53	32	22	12	32	1.92
19853754--19853783	9	3.3	9	95	0	51	53	0	3	43	1.17
19855140--19855181	21	2.0	21	81	9	50	42	21	16	19	1.89
19856945--19857032	29	3.0	29	78	6	79	23	4	28	43	1.73
19857339--19857368	16	1.9	15	93	6	51	40	3	10	46	1.54
19860869--19860926	13	4.2	14	78	8	57	39	1	1	56	1.19
19861014--19861609	63	9.7	59	73	11	337	37	9	4	48	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19861034--19861314	61	4.6	59	79	9	264	37	7	3	51	1.47
19863092--19863136	22	2.0	22	84	16	58	33	0	13	53	1.40
19863472--19863576	52	2.0	52	90	0	165	35	9	9	45	1.69
19865511--19865560	26	1.9	26	92	8	84	22	12	10	56	1.65
19865701--19865753	18	2.9	18	78	13	56	33	5	1	58	1.32
19866754--19866807	27	2.0	27	85	3	72	46	3	1	48	1.30
19867400--19867521	59	2.0	63	88	6	189	48	4	8	38	1.55
19868836--19868905	24	3.0	24	71	23	67	38	0	0	61	0.96
19868827--19868918	46	2.0	45	85	10	125	36	0	0	63	0.95
19869551--19869602	21	2.5	21	81	6	52	57	1	1	38	1.21
19872476--19872518	11	3.9	11	78	0	50	23	0	27	48	1.51
19872606--19872643	18	2.2	17	86	9	51	52	5	21	21	1.66
19872553--19872699	52	2.8	52	82	2	170	42	5	24	27	1.76
19873156--19873236	40	2.0	40	97	0	153	33	14	22	29	1.94
19873219--19873299	31	2.6	30	84	3	99	32	20	22	24	1.98
19873627--19873666	11	3.6	11	86	0	62	20	0	30	50	1.49
19873693--19873849	52	3.0	52	83	3	165	41	8	23	26	1.83
19877627--19877653	2	13.5	2	100	0	54	51	48	0	0	1.00
19889060--19889114	25	2.3	24	87	9	85	40	14	23	21	1.90
19889060--19889121	25	2.6	25	84	5	83	40	12	22	24	1.89
19891978--19892029	21	2.4	21	96	3	95	50	0	0	50	1.00
19891993--19892055	27	2.4	26	77	12	65	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19897589--19897647	27	2.2	27	81	6	66	47	0	5	47	1.24
19898289--19898327	17	2.2	17	86	4	51	53	7	2	35	1.43
19901217--19901277	2	30.5	2	93	0	95	47	0	4	47	1.23
19904694--19904720	2	13.5	2	100	0	54	51	0	0	48	1.00
19905339--19905374	18	2.0	18	100	0	72	27	22	22	27	1.99
19907908--19907957	17	2.9	17	77	14	57	72	6	6	16	1.25
19910138--19910309	34	5.2	32	69	18	104	46	13	18	21	1.83
19910085--19910324	65	3.7	65	80	1	239	45	10	20	22	1.82
19910607--19910640	9	3.8	9	88	0	50	38	5	23	32	1.79
19913284--19913335	18	2.8	19	78	18	65	25	0	3	71	1.03
19913732--19913852	15	7.9	15	71	16	70	47	30	0	21	1.57
19913735--19913849	16	7.4	16	72	8	76	47	30	0	20	1.56
19918432--19918461	14	2.2	13	94	5	51	73	6	0	20	1.05
19919470--19919513	17	2.5	17	81	3	52	72	11	2	13	1.21
19934024--19934079	27	2.1	27	100	0	112	57	3	7	32	1.43
19949740--19949765	13	2.0	13	100	0	52	15	7	0	76	0.99
19956283--19956325	19	2.3	19	88	8	61	20	13	44	20	1.86
19956283--19956311	9	3.0	10	90	10	51	20	10	48	20	1.79
19970548--19970573	1	26.0	1	100	0	52	100	0	0	0	0.00
19971311--19971360	19	2.6	19	81	9	57	70	4	0	26	1.05
19977061--19977117	28	2.0	28	86	6	80	43	12	0	43	1.41
19977631--19977671	21	2.0	21	85	9	57	31	0	9	58	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19977644--19977707	30	2.1	30	82	8	76	28	1	7	62	1.32
19984812--19984844	2	17.5	2	87	12	52	48	0	0	51	1.00
19986309--19986347	18	2.1	19	85	4	53	74	2	20	2	1.06
19989014--19989057	21	2.0	22	86	4	63	50	2	2	45	1.27
20001525--20001622	33	3.2	33	68	24	106	40	14	5	39	1.68
20001501--20001622	57	2.1	57	93	0	208	42	12	4	40	1.61
20011186--20011252	28	2.4	28	82	7	73	43	1	1	53	1.19
20011438--20011472	16	2.1	17	89	5	54	57	0	5	37	1.23
20012583--20012612	13	2.3	13	94	0	51	76	3	6	13	1.11
20019345--20019399	28	2.0	26	82	10	65	30	9	9	50	1.65
20027588--20027650	33	1.9	33	83	6	83	33	17	0	49	1.47
20028859--20028902	18	2.4	18	84	0	61	31	0	0	68	0.90
20029739--20029797	30	2.0	30	83	6	75	47	3	10	38	1.54
20029973--20030038	27	2.5	27	85	7	82	57	0	3	39	1.14
20029977--20030038	31	2.1	30	85	11	85	58	0	3	38	1.15
20030201--20030233	17	1.9	17	93	0	57	66	3	12	18	1.36
20032490--20032514	12	2.1	12	100	0	50	56	8	24	12	1.62
20033654--20033678	13	1.9	13	100	0	50	20	0	0	80	0.72
20034285--20034482	104	1.9	103	94	1	351	22	12	13	51	1.74
20039817--20039860	22	2.0	22	100	0	88	40	13	13	31	1.84
20045796--20045820	2	12.5	2	100	0	50	48	0	0	52	1.00
20056722--20056748	6	4.5	6	100	0	54	14	0	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20059364--20059861	247	2.0	248	93	1	847	37	20	15	26	1.93
20061567--20061648	40	2.0	40	88	0	119	28	18	12	41	1.86
20064885--20064915	2	15.5	2	100	0	62	51	0	0	48	1.00
20068968--20069021	20	2.8	20	94	2	92	70	14	0	14	1.17
20071308--20071371	22	2.9	22	80	15	62	34	0	1	64	1.03
20074836--20074877	21	2.1	20	82	8	50	66	0	11	21	1.23
20076271--20076330	30	2.0	30	83	9	77	61	13	10	15	1.56
20079857--20079900	22	2.0	22	86	0	61	36	11	9	43	1.72
20083318--20083360	21	2.0	22	90	4	70	30	9	16	44	1.79
20088196--20088252	16	3.5	15	75	15	51	63	3	1	31	1.22
20088195--20088273	34	2.4	33	82	12	101	63	5	2	29	1.29
20088289--20088350	21	2.7	23	78	14	65	70	11	1	16	1.23
20090737--20090771	13	2.6	14	86	13	56	60	0	0	40	0.97
20090834--20090881	19	2.5	21	83	16	68	52	0	0	47	1.00
20090823--20090881	19	3.0	21	80	16	63	54	0	0	45	0.99
20093671--20093801	18	7.1	20	67	22	58	29	2	3	65	1.19
20093789--20093819	12	2.6	12	100	0	62	12	0	0	87	0.55
20093926--20093969	17	2.6	16	82	7	52	22	6	0	70	1.11
20094343--20094387	19	2.3	20	81	11	58	20	28	20	31	1.97
20094746--20094896	11	13.2	11	69	9	63	15	3	4	76	1.07
20094746--20094893	12	11.2	12	69	18	71	14	3	4	77	1.07
20094787--20094890	9	10.8	9	69	19	59	16	2	3	76	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20094833--20094903	6	11.7	6	76	18	58	14	4	1	80	0.93
20094828--20094893	18	3.7	18	81	6	89	13	4	1	80	0.94
20094828--20094890	10	7.0	9	74	13	58	12	4	1	80	0.93
20094830--20094903	29	2.7	29	83	10	84	13	5	1	79	0.96
20094920--20095420	58	8.8	56	85	9	607	45	5	12	35	1.66
20094913--20095420	117	4.5	114	84	10	645	46	6	12	35	1.66
20095338--20095420	26	3.2	26	64	16	73	42	4	14	38	1.67
20099306--20099355	8	6.2	8	77	13	50	82	0	14	4	0.82
20099308--20099336	11	2.6	11	100	0	58	93	0	6	0	0.36
20099324--20099357	17	2.1	16	88	5	50	76	0	17	5	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127