genome.fa.s656.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  71  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13762998--13763043	20	2.3	20	88	0	65	19	65	2	13	1.37
13765798--13765849	23	2.3	23	82	0	68	46	1	1	50	1.23
13766252--13766293	2	21.0	2	100	0	84	50	0	0	50	1.00
13766721--13766748	2	14.0	2	100	0	56	50	0	0	50	1.00
13767087--13767163	22	3.5	21	69	20	59	37	0	3	58	1.17
13769991--13770174	62	3.0	62	91	0	289	41	10	4	42	1.60
13770098--13770137	18	2.2	18	86	0	53	55	2	5	37	1.35
13770190--13770326	9	14.2	9	73	15	73	72	5	1	20	1.14
13770195--13770250	17	3.4	17	80	9	80	82	0	1	16	0.76
13770198--13770256	32	1.9	30	90	10	93	81	0	3	15	0.82
13770275--13770317	3	14.0	3	86	13	61	65	4	0	30	1.13
13770283--13770329	15	3.4	14	80	17	53	70	2	0	27	0.99
13771132--13771316	22	7.6	22	70	19	102	58	2	5	32	1.34
13771168--13771268	18	5.3	18	68	17	62	60	1	4	32	1.29
13771127--13771314	77	2.5	76	89	5	283	59	2	5	32	1.33
13771224--13771358	10	12.3	10	66	23	51	60	2	4	31	1.31
13771185--13771367	101	1.8	102	79	12	216	60	2	4	31	1.32
13771306--13771379	34	2.2	34	78	9	80	67	1	4	27	1.16
13771558--13771801	42	6.1	40	76	12	187	38	20	14	26	1.91
13775755--13775874	59	2.0	59	96	0	222	25	23	10	41	1.85
13780102--13780133	15	2.1	15	94	0	55	40	0	31	28	1.57
13783380--13783555	61	2.9	62	87	5	234	39	9	5	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13783576--13783606	6	5.3	6	92	7	55	83	0	0	16	0.64
13783576--13783606	11	2.7	12	95	5	55	83	0	0	16	0.64
13784457--13784684	24	9.2	24	71	16	155	60	1	4	33	1.28
13784494--13784594	18	5.3	18	68	17	62	60	1	4	32	1.29
13784456--13784648	77	2.6	74	89	5	291	60	1	5	32	1.28
13784581--13784683	34	3.5	31	76	17	103	60	1	2	34	1.23
13784551--13784709	7	22.4	7	71	17	82	63	1	3	30	1.23
13784550--13784698	56	2.6	55	73	17	133	61	2	4	32	1.26
13785911--13785941	1	31.0	1	100	0	62	100	0	0	0	0.00
13787009--13787055	20	2.3	21	85	3	60	38	0	36	25	1.56
13791333--13791357	6	4.2	6	100	0	50	32	0	0	68	0.90
13797948--13797981	18	1.9	18	94	5	61	55	2	0	41	1.15
13799807--13799896	44	2.0	44	91	0	144	32	10	24	33	1.88
13799820--13799913	44	2.1	44	86	0	125	35	10	21	32	1.88
13803273--13803313	20	2.0	20	100	0	82	46	19	9	24	1.80
13806908--13807008	32	3.1	33	74	20	86	29	17	23	28	1.97
13819218--13819271	18	3.1	16	82	15	63	59	3	0	37	1.15
13827385--13827420	2	18.0	2	94	0	63	50	2	0	47	1.15
13827888--13827922	18	1.9	18	88	0	52	68	0	5	25	1.11
13829938--13829964	14	1.9	14	100	0	54	48	0	7	44	1.31
13830493--13830547	27	2.0	29	85	7	78	49	3	0	47	1.19
13830754--13830793	17	2.5	16	88	8	55	42	0	5	52	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13830801--13830838	18	2.1	19	90	5	60	60	0	0	39	0.97
13836636--13836661	2	13.0	2	100	0	52	50	0	0	50	1.00
13837053--13837098	19	2.6	19	86	10	62	50	0	0	50	1.00
13838390--13838452	27	2.3	26	76	10	65	47	1	0	50	1.10
13841161--13841190	15	1.9	16	93	6	53	73	3	0	23	0.98
13841468--13841506	19	2.1	19	90	9	62	71	0	2	25	0.98
13841468--13841507	20	2.1	19	90	4	62	72	0	2	25	0.97
13841700--13841733	3	11.3	3	100	0	68	35	0	0	64	0.94
13848365--13848395	2	15.5	2	100	0	62	51	0	48	0	1.00
13852576--13852644	2	34.5	2	86	0	93	43	2	4	49	1.37
13852578--13852642	22	3.0	22	88	0	103	43	3	4	49	1.39
13857708--13857763	8	7.1	8	80	8	62	57	0	1	41	1.09
13859054--13859106	24	2.3	22	76	20	54	69	0	0	30	0.88
13859310--13859353	24	1.9	22	86	9	61	29	2	0	68	1.02
13860339--13860393	6	8.7	6	80	11	56	80	5	1	12	0.97
13860306--13860367	12	5.6	11	77	7	56	75	3	4	16	1.10
13861441--13861470	1	30.0	1	100	0	60	0	0	0	100	0.00
13867698--13867857	82	2.0	82	91	0	257	25	20	21	32	1.98
13867946--13868174	112	2.0	112	94	0	395	14	28	28	27	1.96
13871905--13871932	2	14.0	2	100	0	56	50	0	0	50	1.00
13878327--13878385	29	2.0	29	84	12	77	47	1	0	50	1.11
13885963--13885995	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13889323--13889400	41	1.9	41	97	0	147	20	29	16	33	1.95
13889364--13890294	369	2.5	372	95	2	1687	16	35	25	22	1.95
13890283--13891519	619	2.0	618	98	0	2388	23	24	27	24	2.00
13895811--13895853	21	2.0	21	100	0	86	13	37	27	20	1.91
13895813--13895859	21	2.2	21	92	0	76	14	40	25	19	1.90
13900236--13901032	395	2.0	395	91	2	1303	30	13	9	46	1.74
13903567--13903651	30	2.8	30	89	0	125	52	1	2	43	1.21
13903620--13903664	23	2.0	23	95	0	81	53	0	0	46	1.00
13903587--13903690	52	2.0	53	88	5	158	55	1	0	41	1.17
13905107--13905178	32	2.2	32	97	0	135	47	11	18	23	1.80
13910908--13910953	24	1.9	24	95	0	83	30	13	28	28	1.94
13916139--13916221	41	2.0	40	82	11	98	48	0	8	43	1.33
13916743--13916797	23	2.4	23	84	0	74	36	0	5	58	1.21
13916779--13916856	26	2.9	27	78	14	83	50	0	1	48	1.09
13916839--13916879	6	7.2	6	83	5	50	70	0	0	29	0.87
13916837--13916876	16	2.4	16	91	4	62	67	0	0	32	0.91
13917068--13917093	13	2.0	13	100	0	52	0	0	15	84	0.62
13917432--13917506	39	1.9	39	86	5	107	37	10	13	38	1.79
13919029--13919066	14	2.6	15	83	4	51	55	0	0	44	0.99
13919464--13919498	2	18.0	2	94	5	63	51	0	0	48	1.00
13920917--13920943	2	13.5	2	100	0	54	48	0	0	51	1.00
13923244--13923287	21	2.2	19	84	12	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13923248--13923312	30	2.2	29	83	5	78	56	0	1	41	1.08
13923274--13923334	24	2.6	23	85	15	88	54	0	1	44	1.10
13925834--13925886	26	2.0	26	100	0	106	47	3	15	33	1.63
13932104--13932165	25	2.5	23	75	19	63	38	3	3	54	1.32
13932688--13932720	18	1.9	18	88	11	52	36	6	15	42	1.71
13933285--13933315	15	2.1	15	100	0	62	38	6	0	54	1.26
13933549--13933593	16	3.0	15	81	9	56	20	8	2	68	1.27
13933251--13933920	223	3.0	222	80	4	631	22	10	10	56	1.64
13933251--13933844	223	2.7	222	81	3	642	23	9	9	57	1.60
13933712--13933741	14	2.1	15	93	6	53	16	6	3	73	1.18
13934085--13934119	16	2.1	18	89	10	56	17	0	5	77	0.96
13934095--13934144	18	2.8	17	82	8	55	12	2	6	80	0.98
13937547--13937587	21	2.0	21	85	9	57	39	4	12	43	1.63
13939910--13940061	65	2.3	65	80	6	171	57	9	8	24	1.57
13943656--13943684	10	2.7	11	94	5	51	55	0	27	17	1.42
13944704--13944754	19	2.7	19	87	0	75	41	35	1	21	1.65
13944820--13944861	18	2.3	18	87	0	57	54	38	0	7	1.28
13945358--13945425	28	2.5	27	76	11	68	54	2	8	33	1.47
13949943--13949976	12	2.8	12	91	8	52	11	8	0	79	0.94
13957399--13957457	27	2.2	27	84	6	75	33	25	1	38	1.66
13957811--13958038	114	2.0	114	88	1	341	24	30	4	40	1.74
13957954--13958020	33	2.0	33	91	0	107	22	29	4	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13960541--13960569	15	1.9	15	100	0	58	51	0	13	34	1.42
13960570--13960626	26	2.2	26	90	0	87	24	7	12	56	1.61
13961843--13961886	18	2.3	18	84	11	52	61	2	0	36	1.09
13967929--13969158	356	3.5	355	86	2	1573	35	11	15	37	1.84
13973413--13973454	21	2.0	21	85	4	57	16	9	7	66	1.42
13977645--13977692	22	2.2	21	81	3	60	75	6	0	18	1.01
13977663--13977705	16	2.6	17	85	10	54	74	9	0	16	1.06
13977646--13977705	17	3.6	16	82	8	59	75	8	0	16	1.04
13978592--13978636	15	2.9	15	83	3	54	77	4	0	17	0.92
13978595--13978652	16	3.7	15	80	11	55	75	5	0	18	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127