genome.fa.s656.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  1  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712--746	18	1.9	18	88	0	52	42	5	5	45	1.51
3264--3307	22	2.0	22	90	0	70	25	2	0	72	0.96
3273--3314	22	1.9	22	90	0	66	28	0	0	71	0.86
3273--3366	28	3.7	23	76	18	73	26	2	2	69	1.11
3324--3580	4	64.8	4	66	18	60	26	3	3	66	1.23
3412--3478	26	2.6	25	83	6	89	34	2	1	61	1.20
3419--3490	14	4.8	14	74	14	56	30	4	1	63	1.21
3415--3499	22	3.8	22	80	14	86	31	3	1	63	1.19
3416--3555	43	3.2	42	79	11	124	29	3	2	64	1.25
3554--3582	15	1.9	15	100	0	58	17	0	6	75	1.01
4096--4141	14	3.3	14	80	14	51	52	0	47	0	1.00
4463--4509	12	4.0	12	78	21	55	19	6	0	74	1.03
4460--4509	18	2.8	17	85	14	66	18	6	0	76	0.99
4460--4508	23	2.1	23	85	14	66	18	4	0	77	0.92
4535--4625	29	3.2	27	65	22	69	38	5	16	39	1.72
4647--4681	8	4.2	8	88	3	52	2	8	0	88	0.61
4645--4681	17	2.1	17	90	5	56	2	8	0	89	0.58
7747--7778	15	2.1	16	94	5	57	18	18	6	56	1.62
16029--16197	42	4.0	41	88	4	248	23	18	20	37	1.94
16394--16461	7	9.9	7	88	6	86	30	0	1	67	0.99
16394--16460	26	2.5	26	82	9	64	31	0	1	67	1.00
16404--16456	26	2.0	26	92	0	88	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16567--16680	21	5.4	21	72	16	76	30	6	1	61	1.30
16579--16659	20	3.9	20	75	18	67	28	7	2	61	1.36
16681--16712	16	1.9	17	93	6	57	9	0	9	81	0.88
17559--17947	57	6.7	57	83	10	386	43	8	12	35	1.73
17545--17949	59	7.0	56	83	9	399	44	8	12	35	1.72
17765--17860	31	3.2	30	70	19	92	43	8	9	38	1.67
20998--21030	14	2.2	16	89	10	52	63	0	3	33	1.10
21403--21442	17	2.4	17	87	4	55	32	0	2	65	1.06
27813--27851	2	19.0	2	89	5	60	48	5	0	46	1.24
27813--27861	14	3.4	14	86	8	55	48	4	2	44	1.33
28284--28420	70	2.0	70	82	2	168	41	16	17	24	1.89
31721--31754	18	1.9	18	94	5	61	35	0	5	58	1.22
33916--33951	17	2.1	17	94	0	63	22	11	13	52	1.72
35317--35361	21	2.1	21	84	8	56	22	6	2	68	1.24
35517--35563	21	2.2	21	85	11	60	25	2	0	72	0.96
36946--37213	40	6.7	40	76	8	217	38	18	14	27	1.91
36955--37220	120	2.2	120	87	1	390	38	18	15	28	1.91
43952--44006	18	3.2	18	82	15	71	40	7	3	49	1.48
43464--47292	181	21.3	181	71	11	1715	41	10	8	40	1.68
43444--45508	178	11.5	177	76	8	1459	41	9	8	40	1.69
43464--45517	540	3.8	535	79	8	1795	41	9	8	40	1.69
45757--45885	67	1.9	67	93	0	222	37	11	6	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47185--47540	130	2.9	120	78	10	362	35	9	8	46	1.66
47317--47573	130	2.0	129	89	0	388	36	8	7	47	1.61
47447--49138	182	9.4	180	77	7	1429	42	9	7	40	1.67
47447--49138	543	3.1	530	79	6	1647	42	9	7	40	1.67
47447--49109	718	2.3	719	79	6	1738	42	9	7	40	1.67
48690--49192	182	2.8	180	80	7	425	43	9	7	39	1.66
50212--51038	179	4.7	173	75	9	482	40	9	8	41	1.66
50113--52119	534	3.7	524	76	10	1660	41	9	8	41	1.67
50112--52175	181	11.5	180	71	10	1020	41	9	8	40	1.67
52182--52558	182	2.1	182	80	5	406	41	10	7	40	1.69
52185--53581	181	7.8	176	74	9	682	40	10	9	39	1.72
53423--53726	143	2.1	146	81	7	354	39	11	8	40	1.71
53566--56004	181	13.6	180	75	8	1632	42	9	7	40	1.66
55687--55719	18	1.9	17	88	11	50	42	6	3	48	1.43
55686--55737	17	3.0	17	75	13	52	40	7	1	50	1.42
53630--60781	715	10.1	707	72	11	2693	42	9	8	40	1.67
55716--56556	323	2.6	323	89	0	1243	41	10	8	39	1.70
56364--60785	181	24.6	179	75	6	2943	41	9	8	40	1.67
56364--64954	717	12.0	711	72	11	3108	41	9	8	40	1.68
61173--61497	163	2.0	165	82	4	399	41	8	9	39	1.69
61320--64946	180	19.8	181	70	10	1515	41	10	8	40	1.70
61320--64948	181	19.8	179	69	11	1344	41	10	8	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61578--62467	359	2.5	363	79	4	926	42	10	7	40	1.67
62252--63236	177	5.5	178	74	8	452	41	10	8	40	1.69
63714--64948	361	3.4	363	75	7	798	40	9	9	39	1.71
64633--65244	327	1.9	326	80	6	711	42	10	8	38	1.69
66400--66436	18	2.0	19	89	5	58	59	0	2	37	1.12
66692--66730	19	2.0	21	90	10	64	41	5	10	43	1.61
66131--68515	181	13.3	179	74	8	1430	42	10	7	39	1.69
66131--68508	539	4.4	538	77	7	1955	42	10	7	39	1.69
68982--72666	181	20.6	178	74	9	2344	39	8	9	42	1.68
68982--72619	718	5.1	710	76	8	3019	39	8	9	42	1.68
68981--72639	899	4.1	884	75	9	2377	39	8	9	42	1.68
68985--72601	361	10.1	358	73	11	1169	39	8	9	42	1.68
72512--72812	145	2.1	146	87	3	428	40	7	8	43	1.63
74567--74599	12	2.6	13	85	4	50	3	6	3	87	0.71
74841--74999	65	2.6	59	81	8	174	13	16	10	59	1.60
78640--78705	19	3.4	18	77	10	60	74	1	9	15	1.14
79458--79493	3	12.3	3	94	5	65	66	0	0	33	0.92
79648--79987	177	1.9	176	82	4	425	42	6	8	42	1.61
80123--81767	181	9.2	180	75	7	1258	40	8	9	41	1.67
81821--82182	182	2.0	182	79	2	395	38	9	8	42	1.70
82156--82200	18	2.5	18	100	0	90	37	6	13	42	1.70
82452--85049	180	14.4	178	72	10	1305	41	10	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85113--85613	181	2.8	178	81	4	589	39	7	10	42	1.68
85631--87217	180	8.9	179	76	9	1204	41	9	8	40	1.69
85631--87302	357	4.7	356	75	9	924	40	10	8	40	1.69
87330--88692	181	7.6	180	77	3	1111	42	10	7	40	1.66
87328--88692	361	3.8	359	77	5	1224	42	10	7	40	1.66
88632--88748	56	2.1	56	91	0	189	53	7	3	35	1.46
88648--88735	28	3.1	28	63	18	65	54	7	2	35	1.42
88456--88922	237	2.0	238	80	3	537	44	10	6	38	1.63
88700--89605	180	5.1	177	77	7	704	42	10	8	38	1.70
89837--95019	180	28.5	180	69	14	1681	41	9	8	40	1.68
91398--91602	112	1.8	114	81	4	263	34	13	8	44	1.73
92176--95019	180	16.0	180	73	10	1739	41	9	8	40	1.68
94124--94157	16	2.2	16	90	10	54	67	2	5	23	1.26
94501--94545	24	1.9	24	86	4	65	40	13	2	44	1.56
96078--97300	181	6.8	177	74	8	954	41	9	8	40	1.68
98153--99453	360	3.6	363	76	7	898	41	10	7	40	1.68
98075--99815	177	9.7	180	74	8	840	41	10	7	40	1.68
99906--101531	180	9.0	180	74	7	994	41	10	9	39	1.71
100295--100960	361	1.8	363	79	5	783	40	9	9	40	1.71
101210--101824	327	1.9	326	80	6	735	42	10	8	38	1.69
102979--103015	18	2.0	19	89	5	58	59	0	2	37	1.12
103269--103306	18	2.0	20	90	10	62	39	5	10	44	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102734--105097	181	13.3	177	75	8	1570	42	10	7	39	1.68
105108--105469	179	2.0	179	85	5	482	43	9	8	38	1.67
105550--109237	181	20.6	179	74	8	2197	39	8	9	42	1.68
105550--108857	718	4.6	702	75	9	2220	39	8	9	42	1.68
105553--109208	537	6.8	534	75	8	2717	39	8	9	42	1.68
108873--108921	18	2.8	17	81	9	55	46	6	8	38	1.58
109082--109383	146	2.1	146	86	2	410	40	7	8	43	1.65
109769--109815	3	15.3	3	91	4	76	63	2	0	34	1.06
110019--110293	120	2.3	120	82	6	299	44	12	21	21	1.85
111399--111549	65	2.4	63	83	5	180	15	15	11	56	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127