genome.fa.s6.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  103  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29221003--29221074	30	2.4	30	83	0	90	31	12	26	29	1.93
29221396--29221429	9	3.8	9	92	0	50	47	14	11	26	1.79
29221393--29221429	18	2.1	18	94	0	65	48	13	10	27	1.75
29221443--29221489	22	2.0	23	84	8	60	19	25	0	55	1.43
29222048--29222085	19	2.0	19	100	0	76	31	10	26	31	1.90
29223902--29223945	23	1.9	23	95	0	79	38	9	29	22	1.85
29224560--29224586	6	4.5	6	100	0	54	70	29	0	0	0.88
29229977--29230044	24	2.8	24	79	0	64	26	16	30	26	1.96
29232058--29232120	22	2.9	23	75	15	55	49	1	6	42	1.37
29236994--29237418	44	9.7	44	68	13	214	31	18	20	29	1.96
29236979--29237524	175	3.1	175	92	1	893	32	18	20	29	1.96
29239320--29239360	17	2.5	16	84	7	55	43	4	0	51	1.23
29239356--29239396	21	1.9	22	85	5	57	36	9	7	46	1.65
29241348--29241433	43	2.0	43	86	8	122	54	2	22	20	1.56
29246381--29246658	138	2.0	138	91	0	448	44	16	12	26	1.83
29256216--29256282	30	2.2	30	89	0	98	19	26	31	22	1.98
29261231--29261324	27	3.4	27	78	16	113	39	9	28	22	1.85
29263950--29264063	33	3.5	33	83	10	146	17	23	14	43	1.86
29263957--29264085	66	2.0	65	86	10	183	20	23	15	41	1.90
29281532--29281609	16	4.6	16	71	16	50	75	5	0	19	0.98
29281532--29281600	6	11.5	6	75	14	54	75	4	0	20	0.97
29283059--29283090	16	2.1	16	94	5	57	71	0	15	12	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29283258--29283296	18	2.2	18	86	4	53	69	0	12	17	1.19
29283316--29283361	22	2.0	23	84	12	60	67	6	2	23	1.25
29291003--29291045	22	2.0	21	82	13	52	55	4	2	37	1.33
29291021--29291080	20	3.0	20	78	9	68	61	3	0	35	1.12
29291325--29291369	8	5.6	8	84	7	56	26	2	0	71	0.98
29291977--29292016	13	3.1	13	79	13	55	35	25	7	32	1.84
29294421--29294485	32	2.1	30	83	13	80	27	15	7	49	1.72
29294569--29294633	27	2.4	27	89	2	96	50	6	4	38	1.48
29303965--29304039	24	3.2	24	78	14	68	28	2	4	65	1.24
29304126--29304165	19	2.1	19	86	9	55	25	0	2	72	0.97
29304126--29304165	9	4.2	10	82	17	50	25	0	2	72	0.97
29304563--29304632	18	3.7	18	77	11	52	67	2	2	27	1.19
29304585--29304716	10	12.9	10	64	21	51	62	1	3	31	1.22
29304564--29304687	42	3.1	40	74	12	103	65	1	4	28	1.22
29304578--29304681	40	2.6	38	78	13	102	66	0	4	27	1.18
29304578--29304716	21	6.9	19	68	20	79	64	1	3	30	1.20
29304656--29304716	22	2.9	21	76	11	63	60	1	1	36	1.16
29304808--29304846	17	2.3	17	86	8	53	43	0	2	53	1.14
29308030--29308062	13	2.4	14	95	5	59	54	15	3	27	1.55
29309863--29309947	20	4.2	20	81	3	82	40	5	8	45	1.58
29310495--29310666	92	1.9	92	93	0	299	40	20	10	28	1.85
29315164--29315188	12	2.1	12	100	0	50	8	24	0	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29315153--29315213	27	2.3	27	80	5	70	4	31	1	62	1.26
29329340--29329366	14	1.9	14	100	0	54	14	25	22	37	1.93
29330741--29330810	28	2.5	28	78	0	86	27	17	20	35	1.94
29332848--29332959	51	2.2	50	85	3	152	28	34	19	16	1.94
29336090--29336161	32	2.2	32	92	4	119	34	1	8	55	1.39
29336085--29336161	10	7.3	10	76	11	64	35	1	9	54	1.40
29346243--29346330	44	2.0	44	90	0	140	43	11	21	23	1.85
29354001--29354080	25	3.2	25	80	7	92	35	22	18	23	1.96
29369769--29369819	20	2.5	21	81	15	54	43	5	1	49	1.38
29373287--29373328	19	2.0	21	86	13	61	59	0	0	40	0.97
29374431--29374485	22	2.5	22	100	0	110	30	5	18	45	1.72
29381185--29381243	17	3.4	17	71	17	57	37	1	3	57	1.25
29381744--29381798	23	2.4	22	77	17	58	47	3	7	41	1.49
29387048--29387108	29	2.1	29	84	0	77	22	32	24	19	1.97
29387252--29387320	19	3.6	19	70	18	61	33	26	24	15	1.95
29392626--29392659	16	2.2	15	94	5	59	64	5	5	23	1.38
29395565--29395742	27	6.6	26	82	6	178	26	15	28	29	1.96
29395566--29395721	82	1.9	81	86	3	224	26	16	28	28	1.97
29395562--29395742	82	2.2	81	82	2	220	27	16	27	29	1.97
29395647--29395753	27	3.9	27	85	1	70	26	14	28	30	1.95
29397196--29397261	21	3.1	21	75	0	69	4	31	16	46	1.67
29400327--29400386	17	3.7	17	86	13	99	35	3	51	10	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29400327--29400458	31	4.1	31	75	12	131	34	3	50	10	1.55
29400483--29400609	30	4.2	30	95	0	236	51	0	11	37	1.38
29400918--29401076	39	4.1	39	100	0	318	54	10	15	20	1.69
29404533--29404585	21	2.5	21	93	0	88	30	37	9	22	1.86
29405504--29405569	29	2.3	29	94	0	114	24	34	25	15	1.94
29405512--29405563	15	3.5	15	72	15	54	25	34	21	19	1.96
29421170--29421242	3	24.3	3	81	10	87	63	0	34	2	1.09
29421170--29421246	21	3.8	20	83	14	97	63	0	33	2	1.08
29426790--29426843	25	2.1	26	82	3	65	38	0	16	44	1.48
29426811--29426853	17	2.7	15	80	16	50	46	0	11	41	1.40
29430332--29430413	43	2.0	41	87	4	119	50	3	21	24	1.65
29436074--29436157	42	2.0	42	88	2	123	50	3	20	26	1.64
29446109--29446140	13	2.5	13	95	5	57	71	0	0	28	0.86
29446614--29446686	19	3.8	19	96	0	137	36	16	9	36	1.81
29447488--29447580	32	2.9	32	84	6	125	29	35	19	16	1.93
29452494--29452528	3	11.7	3	100	0	70	68	0	0	31	0.90
29453031--29453096	18	3.5	19	82	12	75	37	1	0	60	1.06
29453035--29453096	20	3.3	18	84	6	79	37	1	0	61	1.06
29453385--29453433	19	2.7	18	83	3	62	20	4	0	75	0.96
29454259--29454470	106	2.0	106	93	0	361	40	16	21	21	1.91
29458087--29458376	97	3.0	97	97	2	541	46	11	20	21	1.82
29462770--29463160	196	2.0	194	86	4	545	43	14	14	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29464321--29464426	35	3.0	34	81	9	115	33	17	23	24	1.96
29464327--29464432	36	2.9	37	84	6	121	34	18	24	21	1.96
29466930--29466979	18	2.6	19	77	22	52	46	0	2	52	1.12
29466995--29467035	13	3.0	14	82	10	50	53	2	0	43	1.13
29469869--29469922	16	3.4	16	92	0	90	37	3	33	25	1.74
29469904--29469997	44	2.1	44	80	9	111	31	5	27	35	1.79
29473623--29473675	18	2.9	18	82	0	70	24	20	15	39	1.91
29473652--29473702	25	2.0	25	84	0	66	21	13	21	43	1.87
29474051--29474112	20	3.1	20	81	4	72	11	25	19	43	1.84
29474352--29474521	43	3.9	43	84	7	193	20	14	22	42	1.88
29480040--29480074	19	1.9	18	88	11	54	45	5	11	37	1.64
29480468--29480514	22	2.1	22	92	0	76	36	17	19	27	1.93
29480478--29480572	23	4.2	22	86	6	111	33	14	21	30	1.93
29497070--29497095	7	3.7	7	100	0	52	42	11	0	46	1.40
29505478--29505518	9	4.6	9	90	0	64	31	2	7	58	1.38
29512698--29512743	20	2.3	20	88	0	65	23	28	28	19	1.98
29516799--29516832	16	2.1	16	94	0	59	11	11	14	61	1.56
29522229--29522373	10	14.1	10	74	9	53	37	2	0	60	1.08
29522219--29522356	40	3.4	40	84	10	158	34	2	0	63	1.06
29522258--29522372	10	11.3	10	72	15	85	38	0	0	60	1.03
29527126--29527162	15	2.6	14	88	12	58	35	0	16	48	1.46
29527413--29527457	20	2.2	20	80	0	54	42	2	13	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29529068--29529139	24	3.0	24	81	6	83	27	13	15	43	1.85
29529102--29529139	18	2.1	18	90	0	58	31	13	15	39	1.86
29529112--29529154	18	2.4	18	80	0	50	30	13	18	37	1.90
29533003--29533039	18	2.1	18	100	0	74	21	5	24	48	1.71
29535395--29535430	16	2.2	16	100	0	72	25	0	36	38	1.56
29535411--29535501	45	2.0	45	85	2	121	27	6	28	37	1.82
29535666--29535700	18	2.0	17	94	5	61	51	0	0	48	1.00
29535553--29535868	156	2.0	157	93	0	544	42	3	5	48	1.42
29535802--29535841	15	2.7	15	88	7	55	45	5	0	50	1.23
29535911--29535991	26	3.0	27	74	13	78	51	2	1	44	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141