genome.fa.s6.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  132  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39642883--39642969	27	3.2	26	79	9	77	37	29	13	18	1.89
39644478--39644546	24	2.9	24	80	8	70	50	5	5	37	1.50
39647819--39647856	6	6.2	6	93	6	67	15	15	15	52	1.75
39648053--39648093	21	2.0	21	85	9	57	21	14	14	48	1.80
39651223--39651708	195	2.5	193	80	5	532	32	10	12	43	1.78
39651417--39651708	97	3.0	97	74	8	297	33	10	11	44	1.75
39651417--39651724	98	3.2	97	74	10	297	33	10	11	44	1.75
39652616--39652661	24	2.0	23	82	4	56	26	4	8	60	1.44
39652720--39652769	26	1.9	26	91	0	82	44	8	12	36	1.71
39656870--39656904	18	1.9	18	94	0	61	54	25	0	20	1.45
39661134--39661463	27	12.2	27	83	0	354	40	20	18	20	1.91
39661135--39661463	54	6.1	54	84	1	390	40	20	18	20	1.91
39661418--39661498	27	3.0	27	82	12	78	38	17	18	25	1.92
39664915--39665425	27	19.1	27	78	4	439	42	21	17	18	1.89
39664915--39665425	80	6.4	79	76	12	425	42	21	17	18	1.89
39664915--39665425	53	9.6	54	79	7	426	42	21	17	18	1.89
39667333--39667545	97	2.2	97	77	4	223	34	12	9	43	1.75
39669235--39669377	26	5.9	23	75	13	83	58	6	6	27	1.50
39669354--39669438	25	3.3	24	77	16	89	63	4	5	25	1.37
39669369--39669438	28	2.6	28	80	6	74	61	5	7	25	1.44
39669258--39669507	26	9.4	26	69	14	136	60	6	5	27	1.43
39669414--39669479	33	2.0	33	82	11	82	59	6	6	28	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39669560--39669648	29	3.3	24	78	20	88	67	3	4	24	1.25
39670469--39670519	16	3.1	16	83	5	57	76	0	13	9	1.02
39670913--39670957	18	2.5	18	82	7	56	40	17	4	37	1.70
39672415--39672465	16	3.1	16	83	5	57	76	0	13	9	1.02
39672859--39672903	18	2.5	18	82	7	56	40	17	4	37	1.70
39673844--39673877	17	1.9	18	94	5	61	11	44	32	11	1.77
39679150--39679197	25	1.9	25	86	0	69	29	18	16	35	1.93
39679495--39679550	18	3.1	18	79	7	60	33	19	5	41	1.74
39679495--39679560	18	3.6	18	73	22	57	36	18	4	40	1.71
39682611--39682699	31	3.0	29	77	11	90	41	15	8	33	1.79
39693336--39693405	35	2.0	35	100	0	140	20	22	20	37	1.95
39703955--39704196	50	4.7	51	77	5	179	24	26	21	27	1.99
39718597--39718631	15	2.3	15	90	0	52	22	5	5	65	1.36
39723770--39724017	130	1.9	130	82	3	311	33	15	24	26	1.95
39724869--39724944	38	2.0	38	97	0	143	26	25	14	34	1.94
39727233--39727279	18	2.6	17	81	15	51	19	2	2	76	0.99
39731266--39731315	13	3.7	13	78	21	50	26	6	0	68	1.13
39736392--39736445	28	1.9	28	88	0	81	29	24	29	16	1.97
39736637--39736774	32	4.4	32	75	6	129	41	19	18	20	1.91
39736765--39736821	26	2.2	26	83	0	69	33	31	22	12	1.91
39736919--39736981	23	2.7	23	87	2	81	46	25	4	23	1.72
39736965--39737017	26	2.0	26	85	3	70	33	22	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39736972--39737029	26	2.2	26	87	0	80	27	20	18	32	1.97
39736997--39737491	27	18.4	27	84	2	514	23	19	20	35	1.95
39736997--39737491	54	9.2	54	87	2	577	23	19	20	35	1.95
39742367--39742393	14	1.9	14	100	0	54	59	11	7	22	1.56
39745190--39745241	24	2.2	24	92	0	86	36	1	9	51	1.46
39748663--39748922	130	2.0	130	100	0	520	26	21	19	33	1.97
39756426--39756450	13	1.9	13	100	0	50	76	16	0	8	1.02
39757478--39757513	6	5.7	6	87	12	54	16	2	13	66	1.36
39757478--39757513	14	2.8	12	91	8	54	16	2	13	66	1.36
39762597--39762632	19	1.9	18	88	5	54	19	8	0	72	1.10
39766039--39766084	20	2.3	20	88	7	67	63	4	0	32	1.14
39770878--39770913	15	2.4	15	95	0	63	36	22	5	36	1.78
39772412--39772486	27	2.8	27	83	0	69	21	29	13	36	1.91
39774387--39774417	2	15.5	2	100	0	62	48	0	51	0	1.00
39780120--39780190	32	2.2	32	94	0	124	26	7	7	59	1.50
39780128--39780192	32	2.0	32	100	0	130	24	6	9	60	1.50
39786172--39786413	50	4.7	51	79	7	217	28	20	26	24	1.99
39794466--39794705	123	1.9	124	87	0	347	35	10	14	38	1.81
39804830--39804946	62	1.9	61	84	8	159	49	5	5	40	1.47
39804954--39805033	37	2.2	37	78	14	85	52	3	2	41	1.33
39806025--39806083	31	1.9	31	89	0	91	45	8	8	37	1.65
39808268--39808333	20	3.3	20	70	8	62	27	18	36	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39808219--39808343	40	3.2	40	90	1	180	35	18	28	17	1.94
39808285--39808349	20	3.2	20	64	14	53	32	16	30	20	1.95
39811559--39811606	24	2.0	24	100	0	96	37	8	8	45	1.64
39821147--39821179	10	3.4	10	83	8	50	24	0	0	75	0.80
39824007--39824050	22	2.0	23	86	8	65	50	0	6	43	1.29
39825023--39825068	24	1.9	24	86	0	65	41	8	26	23	1.83
39828874--39828898	10	2.5	10	100	0	50	0	16	0	84	0.63
39833503--39833631	50	2.6	50	88	2	179	39	13	13	33	1.84
39837302--39837345	22	1.9	24	81	9	56	27	13	13	45	1.81
39841878--39841921	20	2.1	21	87	4	63	13	0	40	45	1.44
39841846--39841912	27	2.5	26	75	15	73	16	0	37	46	1.47
39846006--39846035	15	2.0	15	100	0	60	53	13	13	20	1.72
39847539--39847601	28	2.3	27	83	5	74	33	0	3	63	1.10
39852560--39852776	41	5.3	41	96	0	398	23	29	19	27	1.98
39856495--39856534	20	2.0	20	90	0	62	27	10	12	50	1.72
39856480--39856546	34	1.9	35	84	3	91	34	8	10	46	1.70
39859981--39860083	41	2.5	42	81	9	115	26	22	20	31	1.98
39866261--39866318	22	2.7	22	89	2	82	12	8	18	60	1.57
39868055--39868281	102	2.2	102	97	0	427	20	6	23	50	1.70
39868939--39868980	21	2.0	21	86	9	59	42	19	11	26	1.85
39873271--39873315	20	2.2	20	84	7	56	31	6	15	46	1.72
39881004--39881141	44	3.1	44	66	12	111	24	28	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39881141--39881653	44	11.7	44	82	0	614	20	26	20	32	1.97
39881141--39881652	88	5.8	88	92	0	792	20	26	20	32	1.97
39883790--39883829	6	6.7	6	100	0	80	17	0	15	67	1.23
39883838--39883906	10	6.8	10	84	14	88	11	1	8	78	1.03
39883839--39883892	19	2.8	19	91	2	81	11	1	7	79	1.00
39883839--39883896	9	6.2	9	84	11	73	12	1	8	77	1.06
39883845--39883903	18	3.1	19	85	9	68	13	0	10	76	1.02
39884550--39884574	13	1.9	13	100	0	50	8	0	24	68	1.16
39886107--39886303	41	4.8	41	92	5	317	28	20	22	27	1.99
39886520--39886583	33	2.0	32	90	3	101	26	9	25	39	1.86
39886527--39886600	33	2.3	33	80	2	87	28	8	25	37	1.84
39894712--39895236	41	12.8	41	97	1	973	29	21	22	27	1.99
39895451--39895514	33	2.0	32	90	3	101	26	9	25	39	1.86
39895458--39895531	33	2.3	33	80	2	87	28	8	25	37	1.84
39905905--39905993	45	2.0	45	84	4	117	44	17	21	15	1.86
39907241--39907876	44	14.4	45	73	7	439	30	19	23	25	1.98
39907224--39907706	45	10.8	45	77	5	408	30	20	23	26	1.98
39907223--39907603	134	2.9	134	85	5	452	29	20	23	26	1.99
39908108--39908154	23	2.0	23	88	8	69	72	12	2	12	1.21
39909480--39909520	3	14.0	3	84	5	57	29	2	0	68	1.03
39913777--39913830	20	2.7	20	82	5	65	27	11	14	46	1.79
39917066--39917096	15	2.1	15	100	0	62	0	25	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39928749--39928850	50	2.0	50	100	0	204	35	1	28	34	1.69
39934631--39934868	125	1.9	124	87	4	354	28	14	23	33	1.94
39947628--39947676	23	2.1	23	96	0	89	44	32	8	14	1.74
39950115--39950202	21	4.2	21	75	2	79	15	19	18	46	1.84
39950132--39950270	42	3.3	42	82	1	172	14	23	18	43	1.86
39950206--39950274	21	3.3	21	66	8	50	14	27	18	39	1.90
39956277--39956438	77	2.1	77	97	0	306	41	7	9	41	1.66
39956798--39956875	26	3.3	24	67	22	58	43	1	0	55	1.08
39956730--39956862	56	2.3	57	82	10	155	43	0	3	53	1.16
39956820--39956852	11	3.0	11	91	8	50	42	0	0	57	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141