genome.fa.s6.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  50  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15060636--15060682	24	2.0	24	95	0	85	31	12	23	31	1.92
15064476--15064564	43	2.1	43	95	0	160	29	16	12	41	1.85
15068694--15068730	12	3.0	12	92	4	56	8	56	2	32	1.43
15069264--15069311	19	2.5	20	80	10	55	37	16	14	31	1.89
15073140--15073211	6	12.0	6	82	5	56	18	34	4	43	1.69
15075101--15075139	17	2.4	16	84	16	53	48	7	2	41	1.45
15075867--15075944	31	2.5	31	74	10	81	44	3	6	44	1.47
15078744--15078778	18	1.9	18	88	0	52	68	0	28	2	1.04
15082481--15082551	35	2.0	35	97	0	133	35	11	5	47	1.63
15084076--15084111	17	2.1	17	100	0	72	41	16	27	13	1.87
15089108--15089141	17	2.0	17	100	0	68	17	41	17	23	1.90
15096704--15096815	59	1.9	59	92	0	188	26	20	8	43	1.81
15100279--15100308	6	5.0	6	95	0	51	13	20	0	66	1.24
15110396--15110548	74	2.1	75	83	3	193	32	7	19	41	1.79
15110622--15110772	41	3.7	41	93	0	257	27	19	21	30	1.98
15110616--15110830	82	2.6	81	85	5	263	26	18	23	30	1.98
15111739--15111788	23	2.2	23	96	0	91	50	0	22	28	1.49
15121935--15121977	3	14.3	3	95	0	77	65	32	2	0	1.06
15132224--15132259	17	2.1	17	100	0	72	11	11	11	66	1.45
15132587--15132650	33	1.9	34	87	6	96	43	17	4	34	1.69
15133518--15133563	22	2.1	21	84	4	56	17	4	19	58	1.55
15133549--15133632	23	3.7	23	88	0	132	20	7	28	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15137965--15138173	92	2.3	91	86	5	278	45	3	3	46	1.39
15138101--15138148	26	1.9	25	84	16	64	45	0	2	52	1.12
15138310--15138344	18	2.0	17	88	5	52	45	0	0	54	0.99
15138510--15138597	45	2.0	44	86	2	122	34	29	4	31	1.78
15139206--15139339	64	2.1	64	92	0	223	39	13	10	36	1.79
15139428--15139465	20	1.9	20	88	0	58	44	5	2	47	1.39
15144157--15144189	14	2.4	14	94	0	57	15	54	9	21	1.68
15146509--15146569	32	1.9	32	96	0	113	34	13	9	42	1.77
15147146--15147184	20	2.0	20	94	0	69	48	0	2	48	1.15
15147446--15147492	24	2.0	24	84	16	62	31	0	17	51	1.46
15147650--15147826	40	4.4	41	82	7	247	27	16	22	33	1.96
15149586--15149655	27	2.6	28	82	10	83	37	1	0	61	1.05
15156409--15156441	15	2.3	15	89	5	50	75	0	0	24	0.80
15158946--15159043	10	10.0	10	74	25	61	40	1	0	58	1.05
15158955--15159065	32	3.6	32	86	9	176	39	1	0	58	1.09
15158944--15159062	60	2.0	60	95	4	215	39	1	0	58	1.08
15159033--15159072	21	1.9	21	89	0	62	37	2	0	60	1.11
15159032--15159079	21	2.2	20	79	13	51	33	2	4	60	1.27
15164881--15164930	16	3.1	16	76	2	55	36	6	14	44	1.69
15167062--15167119	29	2.0	29	96	0	107	18	17	43	20	1.89
15176635--15176690	17	3.7	17	67	30	54	42	10	12	33	1.77
15176632--15176685	27	2.0	27	100	0	108	48	11	11	29	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15184824--15184848	2	12.5	2	100	0	50	52	0	48	0	1.00
15192421--15192792	45	8.9	45	70	13	215	26	25	19	29	1.98
15192510--15192693	37	4.8	38	67	14	110	29	23	17	29	1.97
15202455--15202740	144	2.0	144	90	1	457	25	25	16	32	1.96
15204218--15204264	24	1.9	25	91	4	78	46	10	14	27	1.78
15205957--15206008	17	3.4	17	75	25	69	25	26	25	23	2.00
15206897--15206939	21	2.0	21	100	0	86	27	13	13	44	1.83
15214641--15214707	34	2.0	34	85	5	91	55	10	19	14	1.68
15215329--15215372	22	2.0	22	81	0	52	40	0	2	56	1.11
15218929--15218969	20	2.0	20	90	0	64	36	4	17	41	1.71
15219356--15219414	17	3.5	17	76	4	57	28	32	18	20	1.96
15228174--15228213	14	2.9	14	84	0	53	32	7	17	42	1.77
15228197--15228236	20	2.0	20	90	0	62	27	10	12	50	1.72
15228182--15228248	34	1.9	35	90	3	109	31	8	13	46	1.74
15228176--15228252	14	5.0	15	71	20	52	32	9	15	42	1.78
15229200--15229247	18	2.5	19	83	13	62	62	6	0	31	1.20
15229312--15229356	16	2.8	16	86	3	54	75	0	4	20	0.97
15229310--15229356	23	2.0	24	87	4	69	74	0	4	21	0.99
15234700--15234793	47	2.0	48	95	2	172	56	11	7	24	1.60
15235221--15235255	16	2.2	16	89	0	52	77	0	5	17	0.96
15242435--15242487	3	17.7	3	92	0	88	32	3	0	64	1.12
15242423--15242487	18	3.4	19	91	6	89	32	3	1	63	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15254728--15254865	50	2.8	50	76	5	145	35	23	19	21	1.96
15254728--15255206	187	2.5	187	83	7	545	32	24	21	22	1.98
15254741--15255206	49	9.7	48	67	13	163	31	24	21	22	1.98
15254728--15255287	98	5.8	97	84	7	595	32	23	21	23	1.98
15255077--15255233	49	3.2	49	69	3	163	33	22	19	24	1.97
15255099--15255255	49	3.2	49	68	3	154	31	24	17	26	1.97
15255126--15255282	49	3.2	49	69	3	163	30	20	22	26	1.98
15254783--15255354	98	5.9	98	84	5	468	30	23	21	23	1.99
15254728--15255354	196	3.2	194	79	6	614	31	23	21	23	1.98
15265527--15265707	51	3.6	51	78	3	206	31	25	16	25	1.96
15270828--15270871	23	1.9	22	82	17	54	36	25	0	38	1.56
15270917--15271009	45	2.1	45	95	0	168	32	23	18	25	1.97
15272643--15272721	39	2.0	39	87	0	113	25	27	10	36	1.88
15278284--15278415	50	2.6	52	78	6	135	36	13	12	37	1.83
15287172--15287227	14	4.0	15	82	13	75	35	5	17	41	1.73
15288585--15288645	32	1.9	32	96	0	113	50	18	3	27	1.62
15288585--15288658	32	2.5	30	85	10	91	50	20	2	27	1.62
15293924--15293974	26	2.0	26	100	0	102	19	11	13	54	1.69
15297877--15297986	31	3.6	31	71	11	100	40	17	8	33	1.79
15297876--15298198	61	5.3	60	73	9	251	42	15	8	33	1.76
15297928--15298322	92	4.3	92	93	0	664	42	14	8	34	1.75
15297867--15298291	61	6.9	62	71	9	212	42	15	7	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15297969--15298304	31	10.9	30	68	8	122	43	14	8	34	1.75
15303522--15303774	127	2.0	127	95	0	452	39	26	5	29	1.77
15304572--15305182	31	19.7	31	69	13	178	42	16	6	34	1.74
15304606--15305131	92	5.7	92	91	0	854	43	15	6	34	1.73
15304606--15305131	184	2.9	184	97	0	962	43	15	6	34	1.73
15305090--15305169	38	2.1	38	95	0	142	38	18	6	36	1.76
15304998--15305236	130	1.9	122	88	8	363	41	16	7	34	1.76
15312854--15313038	43	4.3	42	82	2	199	33	25	15	25	1.95
15315389--15315417	14	2.1	14	100	0	58	72	6	0	20	1.07
15317489--15318127	145	4.4	145	94	2	1151	25	16	13	44	1.85
15317489--15318127	288	2.2	291	95	1	1167	25	16	13	44	1.85
15318014--15318241	113	2.0	114	93	0	395	26	13	10	49	1.75
15318995--15319065	15	4.9	14	83	11	74	35	40	0	23	1.55
15319010--15319058	14	3.4	14	79	20	57	32	44	0	22	1.53
15319050--15319090	21	2.0	20	85	4	55	39	41	0	19	1.52
15319081--15319122	14	2.9	14	82	6	57	35	35	0	28	1.58
15319077--15319123	15	3.3	15	82	8	62	40	31	0	27	1.57
15319423--15319995	114	5.0	114	92	1	864	26	26	22	24	2.00
15321441--15321465	6	4.2	6	100	0	50	48	0	0	52	1.00
15324388--15324427	19	2.1	19	86	9	55	0	12	20	67	1.22
15326344--15326381	16	2.4	16	95	0	67	39	0	0	60	0.97
15328705--15329042	161	2.1	161	85	0	460	35	18	22	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15328910--15329088	94	1.9	94	80	2	207	34	16	25	24	1.96
15329061--15329135	27	2.8	27	83	4	89	34	18	24	22	1.96
15336807--15336849	22	1.9	23	90	4	70	23	0	2	74	0.93
15338533--15338775	40	6.1	40	93	0	387	11	16	27	44	1.83
15351249--15351359	40	2.8	38	78	4	105	40	19	19	19	1.92
15351425--15351659	41	5.8	40	73	10	190	23	22	24	29	1.99
15351420--15351659	82	3.0	81	79	6	263	22	22	25	29	1.99
15351947--15351977	15	2.1	15	93	0	53	25	0	32	41	1.56
15352415--15352468	23	2.4	22	84	3	63	22	1	46	29	1.62
15352805--15352843	19	2.1	18	85	4	51	76	2	5	15	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141