genome.fa.s6.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  30  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9251929--9252046	23	5.2	22	75	9	103	34	32	4	28	1.77
9251927--9252065	45	3.1	44	83	6	163	36	33	3	26	1.74
9259995--9260033	15	2.6	15	79	0	51	58	2	28	10	1.44
9271780--9271827	15	3.3	14	82	8	60	4	20	0	75	0.97
9271765--9271830	21	3.1	21	80	4	71	6	27	0	66	1.15
9272878--9272907	11	2.7	11	89	0	51	16	10	3	70	1.29
9272906--9272973	32	2.1	32	97	0	127	35	19	13	32	1.90
9283088--9283205	47	2.5	47	87	0	164	27	31	8	32	1.87
9283251--9283419	48	3.5	48	82	3	230	31	27	6	34	1.82
9283190--9283419	98	2.4	96	92	2	379	32	26	6	34	1.81
9292810--9292861	23	2.3	22	75	21	54	9	23	1	65	1.32
9299470--9299514	23	1.9	24	82	13	58	6	24	6	62	1.44
9301745--9301799	20	2.7	22	75	18	64	72	5	18	3	1.18
9301752--9301799	21	2.4	21	86	10	66	72	4	18	4	1.17
9308480--9308533	20	2.7	20	82	0	63	31	5	11	51	1.60
9311967--9312027	28	2.2	28	82	5	70	67	4	21	6	1.33
9318234--9318328	47	2.0	48	91	2	156	45	14	17	22	1.85
9324824--9324970	50	2.9	51	80	11	144	41	12	15	29	1.85
9324850--9324971	50	2.4	52	86	6	178	38	13	16	31	1.88
9329017--9329294	138	2.0	138	98	0	538	28	12	23	35	1.92
9332707--9332884	27	6.6	27	84	3	205	29	28	15	26	1.96
9332728--9332883	82	1.9	81	88	3	233	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9344015--9344081	20	3.3	20	72	0	71	35	13	28	22	1.92
9347081--9347153	9	7.9	9	70	15	51	57	4	2	35	1.32
9347807--9347848	19	2.2	20	87	8	61	28	9	19	42	1.82
9348912--9349002	10	9.5	10	71	12	50	64	2	2	30	1.17
9348934--9349007	18	4.5	17	68	25	61	62	1	2	33	1.18
9349249--9349295	19	2.5	19	89	0	76	36	0	2	61	1.08
9349309--9349396	11	8.2	10	71	18	54	32	1	6	59	1.31
9349309--9349391	10	7.8	10	68	16	51	32	1	6	60	1.29
9349378--9349415	16	2.4	17	78	13	53	23	0	2	73	0.95
9352663--9352809	75	2.0	75	90	0	231	44	9	13	31	1.76
9352882--9352940	30	2.0	30	83	6	75	13	10	20	55	1.66
9352999--9353068	23	3.0	23	75	4	68	45	17	10	27	1.80
9353074--9353111	4	9.5	4	83	11	51	73	2	0	23	0.95
9353073--9353112	20	2.0	20	95	0	71	72	2	0	25	0.97
9353247--9353307	12	5.2	12	82	2	61	40	11	16	31	1.84
9359393--9359433	21	1.9	22	95	5	75	73	0	12	14	1.11
9360821--9361085	44	5.8	44	74	14	223	31	20	20	27	1.97
9360850--9361136	142	2.0	142	93	0	493	33	18	20	27	1.96
9361192--9361470	100	2.8	100	87	0	387	32	22	20	24	1.98
9361191--9361445	50	5.1	50	71	3	199	30	23	21	24	1.98
9369128--9369612	138	3.5	138	90	3	742	41	7	5	45	1.55
9372697--9372744	21	2.2	21	78	10	53	43	12	4	39	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9373183--9373296	28	4.1	27	94	3	183	28	22	24	24	2.00
9373669--9373952	27	10.6	26	84	5	291	20	19	19	40	1.91
9373670--9373952	81	3.5	79	81	6	329	20	19	19	40	1.91
9379374--9379414	21	2.0	21	85	9	57	34	0	7	58	1.26
9379641--9379737	48	2.0	49	86	11	137	37	25	3	34	1.72
9379720--9379790	16	4.4	16	83	3	81	29	21	9	39	1.85
9392687--9392715	12	2.3	13	94	5	51	65	0	20	13	1.26
9402431--9402466	18	1.9	19	88	5	56	27	5	13	52	1.63
9408742--9408766	12	2.1	12	100	0	50	48	8	0	44	1.32
9411296--9411334	21	1.9	20	94	5	69	33	10	25	30	1.89
9411507--9411545	16	2.6	15	88	11	62	53	0	0	46	1.00
9413341--9413385	23	2.0	23	100	0	90	48	6	13	31	1.68
9415315--9415644	82	4.0	82	99	0	651	19	13	22	45	1.85
9416773--9416818	23	2.0	23	95	0	83	32	13	19	34	1.90
9417900--9417970	33	2.2	33	87	5	101	43	4	0	52	1.20
9417975--9418118	7	19.7	7	67	25	68	60	4	2	32	1.30
9417985--9418022	17	2.3	17	95	4	69	50	10	0	39	1.37
9418008--9418118	28	4.0	28	76	14	88	62	3	3	30	1.29
9418048--9418167	20	6.4	20	68	24	59	60	0	5	33	1.27
9418061--9418128	15	4.9	15	83	16	85	63	0	7	29	1.21
9418008--9418108	35	2.8	35	80	15	93	61	3	3	30	1.32
9418023--9418118	11	9.0	10	72	22	63	63	2	4	30	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9423301--9423328	14	2.0	14	100	0	56	14	14	0	71	1.15
9423325--9423395	5	13.2	6	80	14	59	32	4	15	47	1.65
9423317--9423372	27	2.1	27	96	0	103	28	8	10	51	1.66
9423359--9423398	20	2.0	20	100	0	80	35	0	20	45	1.51
9431533--9431575	19	2.3	19	87	0	59	0	6	6	86	0.72
9431545--9431576	7	4.9	7	85	14	50	0	0	12	87	0.54
9431545--9431575	12	2.5	12	94	5	53	0	0	9	90	0.46
9432482--9432512	15	2.1	15	100	0	62	67	0	12	19	1.22
9434201--9434234	15	2.3	15	94	0	59	38	0	23	38	1.55
9435207--9435240	15	2.3	15	100	0	68	38	0	26	35	1.57
9436240--9436283	19	2.3	19	92	0	70	34	13	2	50	1.55
9436786--9436819	17	2.0	17	88	0	50	5	26	0	67	1.13
9437828--9437856	14	2.1	14	100	0	58	34	0	13	51	1.42
9437930--9437970	21	2.0	21	85	0	55	36	12	9	41	1.76
9437978--9438017	21	1.9	21	89	0	62	30	12	0	57	1.36
9438608--9438632	11	2.3	11	100	0	50	64	8	0	28	1.22
9439439--9439482	21	2.1	21	83	8	54	25	9	2	63	1.35
9439620--9439665	21	2.0	24	88	12	71	21	13	4	60	1.49
9441210--9441255	21	2.0	21	84	12	56	60	6	13	19	1.54
9441623--9441737	42	2.7	42	86	2	151	17	34	23	24	1.96
9445227--9445416	9	21.6	9	71	9	106	44	17	1	36	1.56
9445227--9445362	61	2.2	61	86	2	193	44	17	0	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9445288--9445403	45	2.6	45	83	2	137	42	18	1	37	1.61
9445223--9445428	106	2.0	104	88	3	306	45	16	0	36	1.55
9451628--9451840	73	2.9	73	95	0	392	30	19	8	41	1.82
9455269--9455890	130	4.8	130	81	2	651	39	13	15	31	1.85
9463809--9463897	3	32.3	3	70	15	50	62	2	4	30	1.27
9464046--9464088	17	2.6	18	85	10	56	55	0	9	34	1.32
9463825--9464391	188	3.0	188	94	1	994	58	4	8	28	1.46
9465586--9465725	17	8.6	16	81	11	153	16	0	41	41	1.53
9465598--9465721	17	7.5	17	83	8	159	18	0	39	41	1.56
9465598--9465721	33	3.8	34	83	12	161	18	0	39	41	1.56
9465598--9465721	49	2.5	50	89	6	191	18	0	39	41	1.56
9465586--9465725	33	4.3	32	84	8	151	16	0	41	41	1.53
9466096--9466291	66	3.0	66	93	0	320	25	21	26	27	2.00
9477482--9477572	45	2.0	46	82	6	114	42	24	20	12	1.86
9478103--9478202	17	5.4	19	69	20	61	57	3	6	34	1.39
9478037--9478165	64	2.0	64	80	5	145	58	3	5	32	1.36
9479509--9479547	17	2.3	17	86	0	51	28	0	35	35	1.58
9487078--9487640	280	2.0	280	99	0	1117	31	12	8	47	1.71
9487936--9487974	20	2.1	19	86	13	55	51	7	10	30	1.64
9488785--9488821	15	2.4	16	86	13	51	32	2	0	64	1.07
9490799--9491011	42	5.1	42	84	4	196	29	20	20	29	1.98
9491070--9491103	14	2.4	14	95	0	59	52	20	8	17	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9491327--9491397	21	3.4	21	80	0	79	2	45	18	33	1.64
9496848--9497012	18	9.5	18	66	30	69	33	0	20	45	1.52
9496848--9497012	7	19.0	9	65	32	69	33	0	20	45	1.52
9496893--9497246	26	14.1	25	86	7	461	32	0	20	46	1.57
9497003--9497106	19	5.4	19	63	26	58	28	0	22	48	1.57
9496893--9497244	77	4.7	77	88	7	519	32	0	20	46	1.57
9497106--9497227	18	6.4	18	67	26	74	35	1	18	44	1.60
9497162--9497242	19	4.5	19	71	22	84	34	0	18	46	1.49
9496893--9497246	51	7.0	51	86	7	485	32	0	20	46	1.57
9497506--9497550	13	3.5	13	87	0	72	51	2	6	40	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141