genome.fa.s6.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  138  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41590579--41591171	132	4.7	123	89	4	819	24	24	20	31	1.98
41590861--41591177	44	7.2	44	62	13	123	24	22	20	31	1.98
41591174--41591973	44	18.2	44	79	3	797	29	26	15	28	1.96
41591174--41591975	132	6.1	131	95	1	1329	29	26	15	28	1.96
41593235--41593274	7	5.5	8	83	16	52	12	15	0	72	1.12
41593235--41593281	15	3.1	15	80	17	53	12	14	0	72	1.13
41597344--41597401	22	2.6	22	84	7	73	43	17	3	36	1.66
41597391--41597579	21	9.1	21	96	2	346	38	14	9	38	1.78
41597357--41597579	63	3.6	62	92	4	335	38	14	8	37	1.78
41597890--41598397	44	11.7	44	70	15	168	27	23	20	27	1.99
41597927--41598399	217	2.2	217	92	0	786	27	24	20	27	1.99
41606742--41606895	58	2.7	57	76	7	150	29	15	20	33	1.94
41606746--41606898	29	5.3	29	72	6	121	30	15	21	32	1.94
41610862--41610966	29	3.6	29	80	2	104	29	14	23	32	1.94
41622239--41622501	40	6.6	39	83	10	241	25	22	27	24	2.00
41622292--41622536	80	3.1	80	80	5	205	26	22	28	23	1.99
41628117--41628170	27	2.0	27	96	0	99	40	5	9	44	1.60
41631762--41631786	13	1.9	13	100	0	50	52	0	0	48	1.00
41637713--41637850	43	3.2	43	74	6	134	32	26	14	26	1.95
41637691--41637879	87	2.2	86	84	1	243	34	25	14	25	1.94
41637732--41637923	43	4.5	43	76	5	158	34	25	14	26	1.93
41637811--41637919	42	2.6	41	78	16	109	34	23	12	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41642128--41642230	40	2.5	40	88	1	152	28	21	19	31	1.97
41642260--41642414	75	2.1	74	93	1	265	35	15	3	45	1.62
41642555--41642623	27	2.5	27	77	11	68	46	13	1	39	1.52
41642713--41642743	15	2.0	16	93	6	55	38	38	0	22	1.54
41642812--41642846	15	2.4	14	86	9	52	40	37	0	22	1.55
41643140--41643522	41	9.3	41	83	3	407	30	30	18	21	1.96
41643140--41643523	123	3.1	123	83	3	459	30	30	17	21	1.96
41650418--41650478	25	2.4	25	78	10	63	36	3	1	59	1.24
41654580--41654686	53	2.0	53	94	3	189	35	6	21	36	1.80
41658770--41658826	30	1.9	30	96	0	105	28	19	12	40	1.87
41661419--41661468	19	2.6	19	83	0	55	20	18	8	54	1.68
41666563--41666903	50	6.8	50	82	1	353	28	20	28	22	1.99
41667088--41667131	12	3.7	12	84	0	52	56	4	22	15	1.57
41669733--41669794	31	2.0	30	81	9	72	22	25	16	33	1.94
41674026--41674058	9	3.8	9	92	4	50	18	9	27	45	1.79
41696290--41696631	50	6.8	50	86	0	477	22	31	21	25	1.98
41696969--41697026	30	1.9	30	83	13	75	31	24	6	37	1.82
41701560--41701618	20	2.9	19	74	16	57	27	28	10	33	1.89
41731347--41731822	246	1.9	246	92	0	790	40	20	11	27	1.88
41735052--41735144	47	2.0	47	93	0	159	40	11	30	17	1.85
41753440--41753837	27	15.2	27	80	6	354	25	18	17	38	1.93
41753462--41753838	157	2.4	155	81	6	397	25	18	17	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41756357--41756581	40	5.7	40	83	5	260	24	22	27	25	2.00
41759567--41759649	41	2.0	41	97	0	157	15	19	25	39	1.91
41763096--41763215	56	2.1	56	98	0	231	45	9	23	22	1.81
41764343--41764568	40	5.7	40	91	2	303	24	22	28	25	1.99
41770065--41770126	30	2.1	30	84	0	79	51	9	8	30	1.63
41786149--41786205	15	3.7	15	80	13	62	43	8	15	31	1.78
41786151--41786198	16	3.0	16	80	14	55	45	8	14	31	1.74
41786881--41786917	19	1.9	19	100	0	74	18	21	43	16	1.88
41791060--41791106	20	2.3	22	79	17	57	51	2	12	34	1.52
41799403--41799580	27	6.6	27	80	3	160	28	29	15	26	1.96
41799424--41799579	82	1.9	81	85	3	215	27	29	16	26	1.96
41801339--41801744	102	4.0	102	100	0	812	28	26	15	29	1.96
41801373--41801740	51	7.2	51	70	7	316	29	26	15	29	1.96
41814687--41814729	23	1.9	22	95	4	77	25	20	9	44	1.81
41833200--41833226	6	4.5	6	100	0	54	33	0	0	66	0.92
41833518--41833554	17	2.2	17	95	0	65	62	0	0	37	0.96
41837487--41837516	11	2.6	11	94	5	51	83	0	16	0	0.65
41837487--41837516	6	5.2	6	92	8	53	83	0	16	0	0.65
41839895--41839976	30	2.8	29	79	17	89	62	2	3	31	1.26
41840549--41840584	18	2.0	19	89	10	58	69	0	8	22	1.15
41841380--41841702	43	7.5	43	80	5	289	32	25	17	24	1.97
41841458--41841724	43	6.2	43	84	1	320	32	27	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41841988--41842054	21	3.2	21	79	8	73	5	44	16	32	1.72
41844798--41844923	20	6.3	21	72	13	72	10	30	21	38	1.87
41846186--41846210	12	2.1	12	100	0	50	32	32	28	8	1.86
41846747--41846771	10	2.5	10	100	0	50	56	0	0	44	0.99
41847502--41847711	73	2.9	72	83	3	262	25	25	25	23	2.00
41847628--41847838	114	1.9	114	80	4	255	23	20	28	27	1.99
41849212--41849609	147	2.7	147	77	5	344	26	15	21	36	1.93
41849264--41849609	146	2.4	143	78	7	338	27	15	20	36	1.93
41849683--41849728	23	2.0	23	100	0	92	30	43	4	21	1.72
41852819--41852862	20	2.2	20	100	0	88	52	4	4	38	1.42
41852933--41853137	37	5.5	37	74	12	120	47	8	4	39	1.55
41852931--41853105	57	3.1	57	96	0	314	46	8	5	39	1.57
41852818--41853151	151	2.2	151	83	6	403	45	10	4	40	1.58
41853117--41853341	9	25.9	9	80	8	261	45	20	0	32	1.58
41853117--41853349	95	2.5	95	81	6	296	46	20	0	32	1.57
41853136--41853323	104	1.8	104	89	2	297	44	21	1	32	1.60
41853118--41853348	104	2.2	106	81	7	296	46	20	0	32	1.57
41856148--41856191	21	2.1	21	95	0	79	22	25	11	40	1.87
41868450--41868500	27	1.9	26	84	11	68	54	11	9	23	1.66
41868960--41868998	19	2.1	19	90	0	60	61	10	5	23	1.48
41870684--41870916	44	5.1	44	72	11	189	27	21	19	32	1.97
41870634--41871017	142	2.7	142	92	0	624	28	20	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41870866--41871115	98	2.6	98	90	0	302	28	19	17	34	1.95
41871066--41871161	44	2.2	44	83	3	113	29	21	19	29	1.98
41892720--41892765	19	2.4	19	82	10	58	39	13	23	23	1.90
41896812--41896849	19	2.1	19	90	5	60	60	10	5	23	1.50
41902253--41902347	45	2.1	45	90	0	145	31	23	15	29	1.95
41902344--41902541	51	3.9	50	76	6	191	31	27	16	23	1.96
41902392--41902534	53	2.8	52	76	10	132	32	27	17	22	1.96
41902350--41902537	103	1.8	99	83	7	234	32	27	16	23	1.96
41907258--41907352	45	2.1	45	92	3	156	30	23	17	28	1.97
41907369--41907535	51	3.3	50	75	4	165	31	28	16	24	1.96
41910098--41910149	22	2.3	23	87	6	72	44	26	9	19	1.81
41912624--41912682	20	2.9	21	73	14	68	23	32	15	28	1.95
41912624--41912793	41	4.2	41	84	5	184	23	31	14	30	1.94
41914205--41914328	50	2.5	50	81	2	151	27	23	28	20	1.99
41921741--41921930	50	3.7	50	83	4	209	27	20	28	23	1.99
41929171--41929337	41	4.1	41	83	0	217	23	28	14	32	1.94
41929204--41929270	21	3.2	21	70	4	64	23	34	14	26	1.94
41938505--41938574	35	2.0	35	88	0	104	10	21	12	55	1.66
41941049--41941210	75	2.2	75	81	8	195	25	11	11	51	1.71
41943327--41943355	13	2.1	14	93	6	51	68	13	6	10	1.37
41945486--41945521	18	2.0	18	94	0	63	38	2	0	58	1.13
41946097--41946136	20	2.0	20	85	0	53	25	15	7	52	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41955524--41955714	50	3.7	51	83	8	208	26	21	28	23	1.99
41955524--41955714	100	1.9	101	81	8	233	26	21	28	23	1.99
41955966--41956004	20	2.0	20	90	10	62	56	5	23	15	1.59
41963402--41963430	9	3.2	9	100	0	58	51	0	0	48	1.00
41963402--41963437	18	2.0	18	88	0	54	58	2	0	38	1.13
41963420--41963474	29	1.9	28	81	3	65	50	1	0	47	1.11
41971262--41971305	22	1.9	23	81	9	54	36	20	6	36	1.79
41984740--41984996	128	2.0	128	100	0	514	34	24	10	30	1.90
41985696--41985759	26	2.4	26	92	2	101	23	18	25	32	1.97
41991694--41991775	29	2.8	29	86	1	110	39	14	28	18	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141