genome.fa.s6.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  32  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9749978--9750024	21	2.4	19	76	16	51	51	2	0	46	1.13
9749970--9750024	19	2.6	21	72	19	51	52	1	0	45	1.11
9750666--9750691	5	5.2	5	100	0	52	19	80	0	0	0.71
9754527--9754568	17	2.4	17	84	4	57	28	0	2	69	1.01
9756843--9756959	57	2.1	57	98	0	225	51	7	13	27	1.68
9760361--9760430	25	2.8	25	81	12	81	24	25	20	30	1.99
9767815--9767883	25	2.8	25	72	12	70	20	23	24	31	1.98
9771357--9771575	110	2.0	110	94	0	384	31	23	14	30	1.94
9788702--9788766	34	1.9	34	93	6	114	40	7	0	52	1.30
9790361--9790401	22	1.9	21	85	5	55	53	2	39	4	1.35
9793880--9793990	37	2.8	40	74	8	111	29	27	20	22	1.99
9795354--9795448	40	2.3	40	90	3	145	0	28	8	63	1.24
9795466--9795518	3	19.0	3	75	21	53	60	0	0	39	0.97
9795462--9795518	8	6.0	10	78	21	61	59	0	0	40	0.97
9795458--9795521	5	12.2	5	82	17	69	59	0	0	40	0.97
9795464--9795521	23	2.5	23	86	8	73	60	0	0	39	0.97
9798380--9798499	50	2.4	50	92	0	195	40	17	15	27	1.89
9801534--9801597	21	3.0	21	72	2	65	51	0	3	45	1.17
9802269--9802343	22	3.4	22	74	3	62	61	4	2	32	1.28
9808302--9808347	21	2.1	22	84	4	58	65	8	10	15	1.47
9812320--9812410	9	10.3	9	79	10	64	81	9	0	8	0.88
9814803--9816008	44	27.6	44	67	14	346	30	18	22	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9814931--9815121	42	4.5	42	68	12	131	28	21	20	28	1.99
9814799--9815222	126	3.3	127	91	1	652	30	18	22	28	1.97
9815143--9815438	87	3.4	86	73	12	291	29	20	21	28	1.98
9815054--9816054	175	5.7	175	75	11	909	30	18	22	28	1.97
9815423--9815621	99	2.0	99	97	0	371	32	16	23	28	1.96
9815521--9815919	129	3.1	129	92	0	663	30	18	22	28	1.97
9817556--9817581	3	8.7	3	100	0	52	30	0	0	69	0.89
9832433--9832466	17	2.0	17	100	0	68	47	0	29	23	1.52
9841568--9842122	279	2.0	278	95	1	995	38	9	7	44	1.64
9842290--9842320	16	1.9	16	93	0	53	45	0	29	25	1.54
9842660--9842696	9	4.1	9	89	0	56	29	13	13	43	1.82
9844620--9844679	13	4.6	13	75	6	50	31	5	23	40	1.76
9844628--9844674	13	3.7	13	82	5	60	23	6	27	42	1.78
9848929--9848986	29	2.0	29	96	0	107	32	13	43	10	1.78
9850076--9850158	21	4.0	22	72	20	70	54	0	2	43	1.13
9850076--9850158	11	7.9	11	74	23	81	54	0	2	43	1.13
9850086--9850226	41	3.5	42	80	10	152	58	0	2	39	1.10
9850131--9850218	27	3.1	28	88	6	124	62	0	1	36	1.03
9850101--9850235	68	2.0	68	88	5	202	60	0	1	37	1.06
9850153--9850203	18	3.0	17	74	5	50	70	0	0	29	0.87
9852488--9852585	28	3.6	27	81	12	119	31	12	27	28	1.93
9853572--9853818	47	5.3	47	89	0	363	24	12	17	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9853572--9853859	141	2.0	141	84	2	373	25	13	17	44	1.84
9853572--9853859	94	3.1	94	83	6	352	25	13	17	44	1.84
9857280--9857385	37	2.9	37	74	16	119	35	31	15	17	1.91
9866785--9866809	12	2.1	12	100	0	50	20	8	16	56	1.65
9874143--9874205	33	1.9	33	90	0	99	34	1	19	44	1.60
9874278--9874342	34	1.9	34	87	6	96	40	1	15	43	1.56
9874432--9874664	125	1.9	124	81	4	290	40	14	17	27	1.88
9877722--9877773	25	2.1	25	85	7	70	53	5	1	38	1.36
9877911--9877964	21	2.6	21	87	0	72	5	12	48	33	1.65
9879770--9879821	25	2.1	24	82	10	61	67	1	3	26	1.18
9880945--9881037	40	2.4	39	79	15	127	31	2	1	65	1.11
9880996--9881053	29	2.1	27	90	9	98	39	1	0	58	1.08
9881017--9881050	17	2.0	17	94	0	59	38	0	0	61	0.96
9881043--9881082	21	1.9	21	89	0	62	37	2	0	60	1.11
9881042--9881100	22	2.8	21	80	14	59	40	1	3	54	1.27
9883980--9884012	16	2.1	15	94	5	57	24	3	6	66	1.28
9886517--9886548	4	8.0	4	100	0	64	75	0	0	25	0.81
9892694--9892732	21	1.9	21	84	5	53	38	7	2	51	1.44
9895243--9895310	29	2.3	30	80	17	79	50	13	13	23	1.76
9896443--9896488	20	2.3	20	78	14	51	28	4	0	67	1.10
9898474--9898541	27	2.5	27	80	4	75	55	7	7	29	1.54
9898522--9898561	16	2.5	16	84	8	55	55	5	5	35	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9898678--9898716	3	13.3	3	83	5	53	61	0	2	35	1.10
9900276--9901111	50	16.7	50	68	2	440	25	23	20	29	1.99
9900250--9901112	100	8.6	100	85	2	1070	25	24	19	30	1.98
9902497--9902545	15	3.5	14	89	10	66	14	16	0	69	1.19
9902497--9902545	7	7.0	7	82	17	66	14	16	0	69	1.19
9907242--9907309	34	2.0	34	100	0	136	52	5	5	35	1.50
9907256--9907322	17	3.9	18	69	9	59	56	5	4	32	1.43
9907331--9907370	16	2.5	16	84	8	55	55	5	5	35	1.44
9907487--9907534	3	16.3	3	82	4	62	60	0	2	37	1.09
9907486--9907534	9	5.6	9	90	2	73	59	0	2	38	1.09
9910677--9910739	19	3.4	18	89	4	74	38	9	19	33	1.84
9910679--9910732	19	2.8	19	94	0	90	37	11	16	35	1.84
9910696--9910755	19	2.8	22	85	9	72	36	6	16	40	1.75
9910721--9910765	23	2.0	23	86	4	65	33	4	15	46	1.66
9910926--9910964	19	2.0	21	85	10	55	15	10	5	69	1.34
9911170--9911224	15	3.7	15	79	16	62	32	0	1	65	1.03
9911186--9911222	12	2.7	14	88	12	51	35	0	0	64	0.94
9911171--9911218	24	2.0	24	84	8	62	33	0	2	64	1.05
9917309--9917628	44	7.3	44	62	8	112	28	28	23	20	1.99
9917260--9917661	88	4.6	88	88	0	554	28	28	23	19	1.98
9917661--9918036	44	8.7	44	83	6	475	28	18	25	28	1.98
9917662--9918036	126	2.9	129	87	7	519	28	17	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9917661--9917989	170	1.9	170	89	2	509	28	17	24	28	1.98
9918343--9918458	44	2.7	44	82	4	137	28	20	23	27	1.99
9918879--9918922	21	2.1	21	100	0	88	38	9	13	38	1.77
9918878--9918933	21	2.8	19	87	10	85	37	8	16	37	1.80
9918891--9918956	23	3.0	23	82	12	77	37	6	16	39	1.74
9918922--9918966	23	2.0	23	86	4	65	33	4	15	46	1.66
9919127--9919165	19	2.0	21	85	10	55	15	10	5	69	1.34
9919387--9919425	3	13.3	3	94	5	71	33	0	0	66	0.92
9919391--9919426	17	2.1	17	100	0	72	36	0	0	63	0.94
9919388--9919425	20	1.9	20	100	0	76	34	0	0	65	0.93
9922793--9922864	35	2.1	35	91	0	117	13	15	30	40	1.86
9931402--9931490	37	2.4	37	81	9	92	53	11	15	19	1.71
9931917--9931957	13	3.1	13	85	3	55	24	2	2	70	1.11
9932305--9932333	15	1.9	15	100	0	58	62	0	0	37	0.96
9945467--9945506	19	2.0	20	85	4	55	60	0	7	32	1.25
9946271--9946335	31	2.1	30	78	18	71	50	6	1	41	1.36
9946330--9946370	20	2.2	18	86	8	55	26	4	0	68	1.10
9946329--9946378	19	2.7	19	82	11	59	28	8	0	64	1.22
9946388--9946448	24	2.4	27	81	13	83	44	0	1	54	1.10
9948896--9948959	26	2.6	25	78	9	69	28	4	3	64	1.29
9948902--9948940	19	2.1	19	85	9	53	25	5	2	66	1.25
9952442--9952483	22	2.0	21	90	4	66	35	4	2	57	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9953513--9953713	92	2.2	91	85	3	269	34	20	11	32	1.90
9953798--9953860	19	3.4	19	73	8	58	66	1	3	28	1.16
9953799--9953870	37	1.9	37	86	5	101	66	2	4	26	1.23
9953815--9953877	19	3.4	19	77	2	74	65	3	3	28	1.24
9953806--9953951	56	2.5	57	77	13	140	61	3	6	28	1.36
9953888--9953913	10	2.6	10	100	0	52	53	0	0	46	1.00
9953819--9953975	55	2.8	56	78	11	142	57	3	5	32	1.40
9954161--9954212	10	5.3	9	76	15	50	34	1	1	61	1.18
9954199--9954255	23	2.4	25	85	5	73	29	3	0	66	1.08
9954257--9954431	87	2.0	87	88	2	262	32	10	22	34	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141