genome.fa.s6.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  135  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40463719--40463809	27	3.7	23	76	18	69	59	1	0	39	1.05
40463712--40463770	27	2.2	27	90	3	93	61	0	0	38	0.96
40463724--40463780	26	2.1	27	87	9	82	63	0	0	36	0.95
40463744--40463781	17	2.1	18	85	9	51	63	0	0	36	0.95
40466570--40466605	18	2.1	17	94	5	63	33	0	2	63	1.08
40467263--40467309	10	4.6	10	80	12	51	27	6	4	61	1.39
40476069--40476156	3	29.3	3	95	0	158	0	35	0	64	0.94
40481570--40481648	39	2.0	39	100	0	158	54	15	7	22	1.66
40482748--40482774	7	3.9	7	100	0	54	88	0	0	11	0.50
40483471--40483522	15	3.2	15	73	19	50	44	0	0	55	0.99
40483556--40483592	16	2.3	16	86	13	58	40	0	0	59	0.97
40483604--40483645	20	2.0	22	86	9	61	54	0	0	45	0.99
40484272--40484299	14	2.0	14	100	0	56	50	0	21	28	1.49
40493718--40493759	14	3.1	13	78	21	50	59	4	0	35	1.19
40493726--40493763	16	2.4	16	82	4	51	60	5	0	34	1.19
40493967--40494013	16	2.8	16	78	12	51	59	4	4	31	1.36
40494030--40494100	3	23.7	3	91	0	88	60	2	5	30	1.34
40494030--40494117	9	8.3	11	77	11	53	59	2	5	32	1.34
40495534--40495694	50	3.2	49	74	5	153	26	21	21	30	1.99
40495792--40495914	44	2.8	44	83	2	158	27	23	21	27	1.99
40496310--40496607	120	2.4	125	83	8	360	26	23	18	31	1.97
40497834--40497874	7	5.7	7	88	11	57	12	14	0	73	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40497825--40497874	15	3.4	15	83	10	59	14	14	0	72	1.14
40497843--40497869	13	2.1	13	100	0	54	14	14	0	70	1.17
40497835--40497874	21	1.9	21	90	10	64	12	15	0	72	1.12
40498733--40498775	8	5.5	8	88	5	52	2	18	0	79	0.85
40498733--40498780	23	2.1	23	84	0	60	4	16	0	79	0.89
40498741--40498775	15	2.2	16	90	5	54	2	14	0	82	0.77
40498741--40498788	23	2.1	23	84	3	62	6	10	0	83	0.81
40498756--40498796	21	2.0	21	85	0	55	9	4	0	85	0.73
40500846--40500899	27	2.0	27	96	0	99	27	22	14	35	1.93
40503807--40503848	14	3.1	13	78	21	50	59	4	0	35	1.19
40503815--40503852	16	2.4	16	82	4	51	60	5	0	34	1.19
40504042--40504186	18	7.8	17	74	16	71	61	3	2	32	1.27
40504051--40504167	15	7.1	16	76	18	59	60	4	2	32	1.29
40504114--40504169	3	18.7	3	92	0	94	66	3	0	30	1.09
40509925--40510004	38	2.1	38	92	0	133	20	1	46	32	1.58
40511381--40511422	18	2.2	20	87	8	61	30	11	9	47	1.72
40515161--40515241	28	3.0	24	75	20	72	30	23	12	33	1.92
40515170--40515241	28	2.6	28	90	0	108	29	26	12	31	1.93
40520765--40520827	30	2.1	30	96	0	117	42	7	26	22	1.81
40524569--40524613	19	2.2	21	88	7	67	24	24	0	51	1.49
40532740--40532772	17	2.0	17	88	5	50	45	0	0	54	0.99
40534013--40534056	18	2.5	17	78	10	52	40	15	0	43	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40536196--40536261	13	5.1	13	86	0	96	30	7	25	36	1.84
40536188--40536261	26	2.9	26	83	2	96	31	8	24	36	1.84
40548662--40549095	44	9.9	44	71	10	203	29	22	18	29	1.97
40548734--40549045	87	3.6	85	71	11	265	31	20	17	29	1.96
40548809--40549101	88	3.3	88	72	11	294	31	20	17	29	1.96
40548706--40549106	175	2.3	175	90	0	633	30	21	17	29	1.97
40561972--40562307	169	2.0	169	100	0	672	25	27	17	29	1.98
40582947--40584645	94	18.1	94	84	2	1930	33	18	20	27	1.96
40583185--40584660	44	31.6	44	64	21	277	33	18	20	26	1.96
40583531--40584523	50	21.1	50	64	20	226	33	18	20	26	1.96
40589036--40589072	17	2.2	17	95	0	65	40	10	0	48	1.38
40589317--40589363	24	2.0	23	91	4	76	27	14	10	46	1.78
40595846--40595952	30	3.6	30	81	5	126	19	30	23	26	1.98
40612747--40613136	192	2.0	192	99	0	771	29	18	9	42	1.81
40621477--40621553	29	2.7	29	89	0	118	41	12	23	22	1.88
40621538--40621569	16	2.0	16	100	0	64	50	6	31	12	1.65
40621480--40621627	74	2.0	74	89	0	224	42	10	25	20	1.85
40621509--40621598	45	2.0	45	86	0	126	44	10	26	18	1.81
40621554--40621671	58	2.0	58	95	0	209	38	11	27	22	1.89
40621554--40621660	29	3.7	29	84	0	160	40	10	28	20	1.85
40628876--40629158	154	1.8	150	80	9	329	27	22	14	35	1.93
40630370--40630432	18	3.4	18	78	4	81	55	0	3	41	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40630350--40630435	37	2.3	37	93	0	145	52	0	3	44	1.18
40630363--40630437	37	2.0	37	100	0	150	50	0	5	44	1.24
40631846--40632042	99	2.0	99	97	0	376	16	37	27	17	1.92
40632188--40632347	80	2.0	80	97	0	302	30	11	34	23	1.91
40632191--40632318	42	3.1	42	61	17	97	28	10	34	25	1.90
40632212--40632335	42	3.0	42	62	17	107	29	10	34	25	1.89
40642636--40642755	61	2.0	61	80	6	136	52	7	7	32	1.58
40645608--40645656	20	2.4	21	80	16	59	30	0	2	67	1.02
40646211--40646263	18	2.9	18	80	8	63	32	1	1	64	1.15
40646750--40646789	14	2.9	14	85	10	55	45	37	2	15	1.59
40649797--40649826	10	3.1	10	90	9	53	10	0	16	73	1.09
40650234--40650436	44	4.6	45	80	6	200	30	22	19	27	1.98
40650234--40650438	89	2.3	88	80	6	209	30	22	19	28	1.98
40650477--40650917	50	8.8	49	72	6	357	24	20	22	32	1.98
40650444--40650917	100	4.7	100	86	4	652	24	20	22	32	1.98
40650433--40650917	200	2.4	199	90	2	731	24	20	22	32	1.98
40651697--40651750	16	3.4	16	78	14	58	9	5	1	83	0.88
40651712--40651750	17	2.4	17	86	4	53	10	2	2	84	0.81
40654934--40654972	19	2.0	19	85	5	51	48	15	5	30	1.66
40659332--40659365	10	3.6	10	92	7	54	32	0	0	67	0.91
40662248--40662290	4	10.8	4	100	0	86	51	23	0	25	1.49
40665461--40665488	2	14.0	2	100	0	56	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40669210--40669257	7	6.9	7	97	0	69	72	6	6	14	1.24
40669210--40669257	14	3.4	14	94	0	78	72	6	6	14	1.24
40680415--40680521	19	5.8	18	70	18	60	51	3	2	42	1.34
40689341--40689378	20	1.9	20	88	0	58	31	21	0	47	1.51
40689399--40689463	13	4.8	13	81	12	69	35	16	1	46	1.57
40695662--40695703	15	2.7	16	81	7	50	16	11	11	59	1.61
40706485--40707307	133	6.2	133	92	1	1282	28	16	24	30	1.96
40706485--40707310	263	3.1	264	91	2	1302	28	16	24	30	1.96
40716266--40716319	20	2.6	21	76	5	65	35	5	14	44	1.69
40723638--40723666	15	2.0	15	93	6	51	68	0	0	31	0.89
40723955--40723984	15	1.9	16	93	6	53	63	0	0	36	0.95
40731132--40731209	36	2.2	36	92	0	129	17	26	12	42	1.86
40733055--40733088	11	2.8	13	91	8	54	44	11	8	35	1.72
40734157--40734493	42	9.8	33	68	24	157	21	20	27	31	1.98
40734217--40734353	42	3.5	41	77	17	173	21	18	27	32	1.96
40734180--40734355	75	2.3	75	96	0	316	20	18	27	32	1.96
40734256--40734452	102	1.9	102	93	0	340	21	19	28	30	1.97
40734152--40734491	177	1.9	176	93	1	583	21	20	27	30	1.98
40740053--40740172	42	2.8	42	83	5	134	33	25	15	25	1.95
40746824--40747031	100	2.1	97	97	1	371	39	5	19	35	1.76
40750032--40750093	21	3.0	21	90	0	88	25	11	37	25	1.89
40752127--40752208	41	2.0	41	97	0	155	39	20	14	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40753935--40753967	6	5.5	6	96	0	57	15	27	0	57	1.38
40755251--40755322	25	2.9	25	87	0	108	26	13	22	37	1.92
40776276--40776399	66	1.9	66	86	0	176	29	21	19	29	1.98
40778755--40779046	50	5.7	50	83	3	300	27	21	27	23	1.99
40778761--40779046	149	1.9	153	80	6	339	27	20	28	23	1.99
40783633--40783665	6	5.5	6	96	0	57	12	3	0	84	0.72
40788025--40788076	18	2.7	19	79	11	61	48	0	0	51	1.00
40795320--40795508	95	2.0	95	88	4	283	42	2	4	49	1.37
40795657--40795744	44	2.0	44	86	6	124	35	25	4	35	1.76
40800521--40800963	97	4.5	97	90	5	663	29	1	13	56	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141