genome.fa.s6.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  107  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30617250--30617287	19	2.0	20	85	15	53	57	0	13	28	1.36
30618438--30618474	17	2.1	19	90	10	60	2	2	16	78	0.98
30618679--30619320	44	14.5	44	75	2	498	30	21	17	31	1.96
30618735--30619326	177	3.3	176	82	4	636	30	20	17	31	1.95
30618678--30619326	265	2.4	266	82	3	729	30	21	17	31	1.96
30619889--30619977	44	2.0	44	95	0	160	55	10	12	22	1.67
30623961--30624208	50	4.8	49	83	6	253	27	18	29	24	1.98
30623961--30624208	100	2.4	102	82	6	279	27	18	29	24	1.98
30623972--30624257	150	1.9	153	81	6	357	27	19	28	24	1.98
30628789--30628849	3	20.0	3	73	9	52	60	1	8	29	1.35
30628874--30628911	19	2.0	20	85	15	53	57	0	13	28	1.36
30629692--30629735	23	1.9	23	86	9	63	13	4	4	77	1.08
30629686--30629724	20	2.0	19	85	14	53	12	2	2	82	0.89
30635584--30635637	20	2.7	20	85	0	63	35	7	5	51	1.53
30636242--30636403	86	1.9	84	84	2	216	30	14	11	43	1.81
30638205--30638264	30	2.0	30	83	0	75	26	30	28	15	1.96
30646850--30646883	17	1.9	18	94	5	61	29	2	14	52	1.56
30653926--30653977	20	2.6	20	85	11	79	32	5	7	53	1.53
30654424--30654470	22	2.1	23	88	4	69	27	2	4	65	1.22
30666004--30666043	11	3.3	12	86	10	55	32	0	2	65	1.06
30687567--30687660	3	33.0	3	77	14	92	65	1	30	2	1.11
30689247--30689318	30	2.5	28	74	12	74	34	15	13	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30692736--30692859	62	2.0	62	96	0	230	43	12	25	19	1.85
30694369--30694506	41	3.4	41	82	4	161	39	24	16	19	1.92
30700315--30700416	46	2.3	45	91	5	163	26	23	15	34	1.95
30700117--30700717	301	2.0	301	99	0	1184	29	20	13	35	1.91
30700616--30700731	46	2.6	46	89	4	166	28	22	14	34	1.94
30713565--30713716	27	5.6	27	92	3	223	27	13	28	29	1.94
30713565--30713716	55	2.8	55	91	0	232	27	13	28	29	1.94
30714307--30714455	74	2.0	74	98	0	289	25	10	22	41	1.86
30715537--30715672	68	2.0	68	98	0	263	33	7	22	37	1.82
30720411--30720497	38	2.3	38	84	6	104	51	6	4	36	1.49
30726596--30726835	50	4.7	50	78	9	184	28	22	26	22	1.99
30734529--30734597	27	2.6	27	83	6	77	21	24	26	27	1.99
30734551--30734625	27	2.8	27	80	13	84	20	26	21	32	1.97
30735468--30735501	16	2.1	16	100	0	68	41	17	5	35	1.74
30737445--30737483	20	2.0	20	94	0	69	43	25	0	30	1.55
30758285--30758510	27	8.5	26	78	11	162	23	20	20	36	1.95
30758301--30758488	81	2.3	80	88	2	270	22	20	21	35	1.96
30760795--30760882	44	2.0	44	90	0	140	36	15	21	26	1.94
30771605--30771649	21	2.0	23	83	8	58	44	11	4	40	1.60
30772102--30772221	56	2.1	56	98	0	231	45	9	23	22	1.81
30773350--30773574	40	5.7	40	85	5	278	24	21	27	25	1.99
30773350--30773607	79	3.3	79	83	5	256	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30775033--30775127	42	2.3	42	79	0	100	26	28	17	27	1.98
30788832--30788874	20	2.2	19	83	4	50	46	23	6	23	1.76
30790477--30790516	20	2.1	19	85	4	53	27	5	5	62	1.37
30804374--30804410	18	2.0	20	84	10	51	45	21	0	32	1.52
30807564--30807708	28	5.1	28	78	8	150	37	20	16	26	1.93
30807535--30807708	57	3.1	56	75	5	170	38	20	14	26	1.91
30808797--30808834	16	2.4	16	95	0	67	34	0	34	31	1.58
30808989--30809030	15	2.9	15	82	10	52	52	0	0	47	1.00
30808983--30809391	119	3.4	119	97	0	755	50	5	1	42	1.35
30809098--30809149	15	3.6	15	80	12	56	53	1	0	44	1.11
30809217--30809268	15	3.6	15	80	12	56	53	1	0	44	1.11
30809337--30809388	15	3.6	15	80	12	56	53	1	0	44	1.11
30808983--30809425	239	1.9	238	89	3	685	49	6	1	41	1.38
30824403--30824636	124	1.9	123	93	0	405	26	21	24	27	1.99
30825815--30825879	25	2.7	24	76	4	76	33	13	29	23	1.93
30831527--30831582	21	2.8	19	79	12	51	53	0	5	41	1.24
30835280--30835571	82	3.6	82	100	0	584	38	1	14	46	1.53
30836420--30836465	22	2.1	22	95	0	83	36	6	19	36	1.78
30847906--30847952	19	2.5	19	82	6	51	53	4	2	40	1.32
30850820--30850879	2	30.5	2	96	3	113	0	48	0	51	1.00
30861960--30861984	12	2.1	12	100	0	50	44	0	16	40	1.47
30862129--30862312	38	4.8	38	84	0	215	39	26	16	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30862119--30862311	76	2.5	76	82	0	242	39	25	17	17	1.91
30875249--30875285	9	4.1	9	85	0	56	45	13	8	32	1.73
30875499--30875558	30	2.0	31	86	3	86	20	40	0	40	1.52
30879864--30880098	29	8.1	28	75	9	186	35	14	26	23	1.93
30879927--30880099	57	3.0	57	85	5	206	34	13	27	23	1.93
30883686--30883783	29	3.3	28	88	7	133	44	12	24	18	1.84
30883713--30884034	149	2.2	149	82	5	382	38	13	24	23	1.91
30883824--30883992	89	1.9	90	82	3	216	39	12	24	23	1.89
30883890--30884034	60	2.4	61	86	2	195	37	12	26	23	1.90
30883625--30884022	30	13.4	30	74	7	174	38	12	25	23	1.90
30886805--30886858	20	2.7	20	82	0	63	24	20	18	37	1.94
30886805--30886878	30	2.5	30	86	8	98	21	20	18	39	1.93
30886805--30886869	20	3.2	20	71	16	53	23	21	16	38	1.93
30888468--30888554	13	6.7	13	69	10	52	77	6	6	9	1.14
30888468--30888528	14	4.6	14	75	20	60	75	6	4	13	1.16
30889618--30889651	18	1.9	18	88	5	52	52	2	35	8	1.47
30891052--30891105	20	2.7	20	82	0	63	24	20	18	37	1.94
30891052--30891125	30	2.5	30	86	8	98	21	20	18	39	1.93
30891052--30891116	20	3.2	20	71	16	53	23	21	16	38	1.93
30898744--30898864	27	4.4	27	84	2	125	28	30	15	25	1.96
30899263--30899440	27	6.6	27	83	3	196	29	28	15	26	1.96
30899284--30899439	82	1.9	81	86	3	224	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30904220--30905968	768	2.3	768	98	0	3340	42	17	18	21	1.89
30917525--30917587	21	3.0	21	88	2	90	30	3	33	33	1.74
30944239--30944285	24	1.9	25	91	4	78	38	0	36	25	1.56
30944968--30945247	27	10.4	27	83	2	321	33	19	23	23	1.97
30945371--30945633	32	8.3	32	75	9	173	20	18	21	39	1.93
30945371--30945608	64	3.7	63	79	7	205	20	18	22	39	1.93
30945431--30945633	96	2.1	95	80	3	221	20	19	20	39	1.92
30945625--30945671	22	2.1	22	84	7	60	21	14	14	48	1.80
30945690--30945741	26	2.0	26	84	0	68	28	23	13	34	1.92
30947094--30947154	31	2.0	31	100	0	122	32	27	6	32	1.83
30956735--30956871	41	3.3	41	86	0	202	35	16	27	21	1.94
30966472--30966524	23	2.4	22	76	20	56	9	18	1	69	1.25
30973214--30973278	20	3.3	19	73	16	51	38	16	21	23	1.93
30974941--30975115	86	2.0	86	100	0	350	42	14	24	18	1.88
30975219--30975322	6	16.8	6	73	4	73	8	18	2	70	1.26
30975202--30975257	21	2.7	21	72	5	51	10	17	1	69	1.26
30975219--30975322	18	5.6	18	75	5	91	8	18	2	70	1.26
30975207--30975323	12	9.3	12	73	15	60	7	18	3	70	1.26
30985859--30985887	14	2.1	14	100	0	58	58	20	0	20	1.39
30987314--30988004	277	2.5	273	87	2	994	46	5	8	40	1.56
30987314--30988004	136	5.0	137	88	2	969	46	5	8	40	1.56
30989238--30989348	33	3.5	33	75	12	101	49	2	3	44	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30993923--30993993	21	3.4	21	78	20	78	59	1	1	38	1.15
30994671--30994733	17	3.6	17	72	8	56	65	1	0	33	1.03
30995230--30995264	16	2.2	16	90	10	54	31	0	2	65	1.07
30995804--30995843	9	4.4	9	90	0	62	10	27	0	62	1.27
30996304--30996352	12	3.8	12	75	19	53	32	16	14	36	1.89
30996300--30996360	28	2.1	29	96	3	115	31	14	14	39	1.87
30998514--30998608	50	1.9	49	86	2	136	24	25	7	43	1.80
31003817--31003863	25	1.9	24	90	0	67	29	21	23	25	1.99
31010319--31010399	26	3.1	26	85	0	108	20	17	22	39	1.92
31010497--31010560	33	1.9	33	81	6	76	23	21	21	32	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141