genome.fa.s6.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  45  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13612914--13612964	20	2.5	20	81	6	68	15	29	15	39	1.89
13613021--13613059	20	2.0	20	94	0	69	17	33	25	23	1.96
13613024--13613069	20	2.3	20	81	7	58	19	36	19	23	1.95
13619120--13619171	9	5.3	11	73	21	53	55	0	0	44	0.99
13619119--13619199	19	4.2	20	76	10	80	55	1	2	40	1.21
13619121--13619231	19	5.9	19	73	17	63	58	0	2	37	1.18
13619429--13619500	37	1.9	37	82	2	90	33	4	2	59	1.31
13619461--13619567	46	2.3	45	81	12	110	37	3	0	57	1.23
13619589--13619783	91	2.2	89	82	4	223	29	10	24	35	1.89
13625902--13626083	51	3.6	50	72	6	145	26	16	26	30	1.97
13628876--13629085	54	3.9	54	84	1	224	21	22	25	30	1.99
13628894--13629107	108	2.0	108	83	3	270	21	21	26	30	1.99
13628893--13629107	54	4.0	53	80	5	189	21	21	26	30	1.99
13638994--13639140	52	2.8	52	79	6	154	21	26	25	27	1.99
13640733--13640794	13	4.8	13	80	7	81	33	6	22	37	1.80
13641022--13641075	19	3.0	19	79	12	53	51	0	1	46	1.11
13641047--13641074	8	3.5	8	100	0	56	50	0	0	50	1.00
13641035--13641089	29	2.0	27	85	7	74	52	0	0	47	1.00
13641916--13641949	16	2.1	16	100	0	68	50	8	23	17	1.74
13643719--13643775	29	2.0	29	96	0	105	35	14	40	10	1.80
13651571--13651614	23	1.9	23	100	0	88	22	22	13	40	1.89
13662666--13662702	14	2.6	15	83	12	51	56	8	2	32	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13664439--13664494	26	2.2	26	80	6	60	25	30	28	16	1.96
13672413--13672556	78	1.8	78	83	0	189	35	26	13	24	1.93
13674032--13674067	16	2.3	16	95	4	65	27	0	0	72	0.85
13677049--13677091	21	2.0	22	86	13	63	44	0	13	41	1.44
13677049--13677092	20	2.1	21	84	12	56	45	0	13	40	1.44
13677043--13677198	65	2.5	62	81	12	158	36	7	14	41	1.73
13677086--13677245	65	2.5	63	81	13	184	32	10	16	40	1.82
13677388--13677544	41	3.8	41	80	6	174	20	20	28	31	1.97
13677389--13677563	41	4.3	40	76	9	140	21	20	26	32	1.97
13679950--13680053	49	2.1	49	92	0	172	30	7	10	50	1.65
13681437--13681479	21	2.0	21	86	8	61	34	0	6	58	1.25
13681496--13681688	28	6.7	27	68	19	88	40	0	3	54	1.22
13681506--13681787	38	7.0	41	66	22	134	41	0	4	53	1.25
13681505--13681793	59	4.8	61	68	12	231	41	0	4	53	1.25
13681605--13681634	15	1.9	16	93	6	53	43	0	6	50	1.28
13681444--13681797	120	3.0	120	96	2	637	41	0	4	53	1.28
13681747--13681781	17	2.1	17	100	0	70	34	0	0	65	0.93
13685177--13685241	33	2.0	33	96	0	121	58	1	0	40	1.07
13685215--13685362	61	2.5	59	81	9	158	45	0	2	50	1.20
13692217--13692265	5	10.4	5	83	16	61	22	0	0	77	0.77
13692224--13692265	13	3.2	13	87	12	59	23	0	0	76	0.79
13692213--13692265	18	2.9	18	86	13	74	22	0	0	77	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13692213--13692262	22	2.3	21	83	16	66	22	0	0	78	0.76
13692213--13692263	19	2.8	19	88	11	72	23	0	0	76	0.79
13692415--13692470	3	19.7	3	78	7	55	28	5	1	64	1.26
13693998--13694086	6	14.5	6	86	9	72	14	1	10	74	1.13
13702799--13702856	24	2.5	24	82	2	73	18	18	20	41	1.91
13706553--13706584	16	1.9	17	93	6	57	37	21	0	40	1.54
13706745--13706915	43	4.0	43	80	11	208	32	28	18	21	1.96
13706745--13706900	84	1.9	84	86	8	228	30	29	18	21	1.97
13712558--13712636	27	2.9	26	87	7	113	43	21	16	18	1.88
13712646--13712735	27	3.3	27	79	0	99	41	21	16	21	1.91
13712558--13712729	89	1.9	89	84	6	233	42	20	16	20	1.89
13712646--13712750	27	4.0	26	77	4	95	41	20	17	20	1.90
13722085--13722111	2	13.5	2	100	0	54	51	0	48	0	1.00
13723271--13723303	17	1.9	17	100	0	66	42	9	0	48	1.35
13723902--13723951	26	2.0	24	84	7	64	48	4	0	48	1.20
13724106--13724176	31	2.3	31	82	4	90	39	14	9	36	1.79
13724283--13724342	17	3.5	17	80	17	63	26	0	3	70	1.03
13726454--13726545	46	2.0	46	100	0	184	47	19	13	19	1.81
13728579--13728622	22	2.0	23	86	4	63	43	13	6	36	1.71
13729353--13729580	115	2.0	115	90	0	357	25	26	17	29	1.97
13743026--13743086	3	20.3	3	73	6	52	34	1	4	59	1.29
13743017--13743076	15	4.0	15	78	8	61	30	3	6	60	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13743373--13743434	28	2.2	27	80	11	72	35	1	1	61	1.16
13745276--13745352	30	2.5	31	77	10	77	59	1	1	37	1.14
13745294--13745343	20	2.5	20	78	15	59	64	0	0	36	0.94
13747761--13747817	24	2.4	25	80	14	66	26	1	10	61	1.38
13755614--13755703	44	2.0	44	100	0	180	26	33	13	26	1.93
13760408--13760441	12	2.8	12	90	0	50	58	0	8	32	1.29
13765439--13765600	40	4.1	39	81	3	153	30	19	21	28	1.98
13767005--13767140	25	5.7	24	66	17	70	32	1	4	61	1.24
13768425--13768630	40	5.2	39	85	5	227	33	20	23	22	1.98
13768434--13768654	120	1.9	118	87	5	329	33	21	22	22	1.97
13769127--13769188	21	2.9	22	80	7	65	20	0	32	46	1.51
13769115--13769231	29	4.1	28	73	18	93	21	0	29	47	1.56
13769699--13769748	20	2.5	20	76	0	55	46	4	0	50	1.20
13781032--13781096	9	7.2	9	87	0	67	21	7	23	47	1.76
13781256--13781280	12	2.1	12	100	0	50	16	24	36	24	1.94
13782458--13782591	50	2.7	50	83	1	160	26	22	29	20	1.99
13786362--13786626	40	6.7	40	85	5	286	26	27	21	24	1.99
13786329--13786626	80	3.7	80	79	9	263	25	27	21	25	1.99
13786558--13786635	40	1.9	41	82	10	97	26	28	20	24	1.99
13796026--13796052	14	1.9	14	100	0	54	81	3	0	14	0.82
13809356--13809520	44	3.6	44	70	15	109	33	16	19	30	1.94
13809356--13809578	94	2.4	94	82	1	259	34	17	19	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13812248--13812294	24	1.9	24	86	4	67	36	0	38	25	1.56
13812963--13813105	27	5.3	27	86	3	162	40	20	15	23	1.90
13813471--13813526	28	2.0	28	92	0	94	23	19	23	33	1.97
13821466--13821538	20	3.5	20	74	16	60	52	1	0	46	1.09
13821475--13821539	22	3.0	22	75	13	62	53	0	0	46	1.00
13822097--13822147	27	1.9	26	84	11	68	11	19	1	66	1.33
13826317--13826468	73	2.1	73	93	2	261	35	21	21	21	1.96
13826443--13826580	25	5.5	24	68	16	77	34	21	25	18	1.96
13826317--13826560	73	3.3	73	82	6	246	35	21	22	20	1.96
13832762--13832804	9	4.7	9	85	2	59	67	6	0	25	1.15
13832772--13832811	18	2.2	18	100	0	80	65	5	0	30	1.14
13834594--13834642	23	2.1	23	96	0	89	48	22	2	26	1.61
13834594--13834651	23	2.5	23	88	5	73	53	20	1	24	1.55
13834880--13834911	3	10.7	3	100	0	64	34	65	0	0	0.93
13840959--13841155	98	2.0	98	93	2	333	37	21	10	30	1.87
13843479--13843584	37	2.9	37	90	2	162	25	22	16	35	1.94
13843547--13843711	46	3.2	52	84	11	243	27	23	14	35	1.93
13844328--13844951	124	5.0	124	95	1	1023	23	25	21	29	1.99
13847515--13848523	504	2.0	504	100	0	2018	26	26	16	30	1.96
13857684--13857709	13	2.0	13	100	0	52	69	7	0	23	1.14
13860025--13860120	39	2.5	39	94	0	165	31	15	14	38	1.88
13878000--13878032	16	2.0	17	88	5	50	12	3	21	63	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13878955--13879112	33	4.8	32	70	11	111	30	25	13	29	1.94
13883141--13883179	6	6.5	6	93	0	60	15	25	0	58	1.37
13883267--13883295	9	3.0	10	90	10	51	20	20	0	58	1.39
13892246--13892276	15	2.1	15	93	0	53	22	0	0	77	0.77
13892453--13892486	10	3.5	10	92	8	61	61	0	0	38	0.96
13892548--13892597	22	2.3	22	79	6	57	68	2	0	30	1.01
13892550--13892600	23	2.3	22	79	3	57	68	3	0	27	1.07
13898884--13898952	30	2.3	30	89	0	102	33	31	1	33	1.67
13900690--13900726	18	2.1	18	89	0	56	24	24	8	43	1.81
13901133--13901180	25	2.0	25	88	12	73	35	2	2	60	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141