genome.fa.s6.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  119  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35223338--35223467	40	3.3	39	88	3	179	24	20	27	26	1.99
35224850--35225108	39	6.6	39	86	2	358	32	19	30	18	1.95
35224858--35225108	79	3.2	78	86	4	362	31	19	31	17	1.95
35224850--35225108	118	2.2	117	87	4	376	32	19	30	18	1.95
35228764--35228823	20	3.1	19	68	17	59	35	16	31	16	1.92
35230988--35231041	19	2.8	20	74	5	56	33	20	31	14	1.93
35231034--35231137	33	2.9	33	87	9	127	33	17	31	17	1.93
35231067--35231146	40	2.0	40	95	0	142	33	16	31	18	1.93
35231070--35231134	20	3.3	19	71	16	60	33	13	35	16	1.89
35233708--35233764	21	2.7	21	88	0	78	17	5	5	71	1.23
35237592--35237692	35	2.9	35	82	1	132	33	14	24	26	1.94
35239162--35239389	50	4.5	50	81	11	277	24	16	27	32	1.96
35239210--35239391	51	3.6	51	80	3	172	24	16	26	31	1.96
35239313--35239393	26	3.2	26	61	22	62	22	14	29	33	1.94
35239400--35239488	45	2.0	45	93	0	151	25	17	23	32	1.97
35242329--35242366	14	2.7	14	88	8	51	36	5	18	39	1.73
35242483--35242521	20	2.0	20	94	0	69	48	2	0	48	1.15
35246318--35246447	43	3.0	43	86	2	181	22	18	25	33	1.96
35246438--35246545	44	2.5	44	89	0	171	17	20	26	35	1.95
35250763--35250892	43	3.0	43	82	0	179	21	15	26	36	1.93
35250889--35250990	44	2.3	44	87	0	150	18	18	25	37	1.94
35254904--35254994	44	2.1	44	81	8	105	27	20	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35254978--35255127	45	3.4	43	79	8	167	26	23	19	31	1.98
35254978--35255154	44	4.0	43	76	7	158	28	23	18	29	1.98
35254987--35255154	89	1.9	89	87	2	248	29	23	19	27	1.98
35256408--35256548	71	2.0	71	94	0	246	25	25	27	21	1.99
35262821--35262860	20	2.0	20	100	0	80	30	15	25	30	1.95
35263812--35263941	43	3.0	43	86	0	197	20	16	27	35	1.94
35263938--35264039	44	2.3	44	82	0	123	19	16	25	38	1.92
35268264--35268393	43	3.0	43	85	0	188	20	16	27	34	1.95
35268390--35268491	44	2.3	44	82	0	123	19	16	25	38	1.92
35273059--35273114	8	7.1	8	77	4	51	58	5	1	33	1.31
35273056--35273144	35	2.6	34	82	5	101	60	4	2	32	1.29
35273640--35273822	50	3.7	48	76	5	188	26	22	18	31	1.97
35273619--35273816	98	2.0	98	90	1	308	27	21	19	31	1.97
35273640--35273846	50	4.2	48	72	10	159	28	22	19	30	1.98
35274118--35274256	45	3.1	45	72	6	140	28	26	16	28	1.97
35274019--35274275	88	2.9	88	80	4	295	27	24	19	28	1.99
35275507--35275561	7	7.9	7	80	15	69	14	18	0	67	1.24
35293413--35293475	22	2.6	23	78	12	65	71	4	6	17	1.25
35293743--35293802	2	30.5	2	77	3	50	56	5	1	36	1.31
35293738--35293817	37	2.2	35	84	4	97	61	3	2	32	1.27
35300021--35300435	138	3.0	136	90	3	647	46	5	6	40	1.55
35300411--35300558	75	2.0	75	90	2	235	31	16	7	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35302914--35303103	102	1.9	102	93	2	328	44	12	13	30	1.80
35308017--35308532	267	1.9	266	93	0	879	32	20	17	29	1.96
35320162--35320215	17	3.2	17	78	5	65	27	14	22	35	1.93
35333838--35333874	18	2.0	19	94	5	67	27	0	27	45	1.54
35334115--35334166	22	2.4	22	83	6	61	21	11	23	44	1.84
35337908--35337948	20	2.0	20	86	9	57	19	17	0	63	1.31
35343521--35343559	20	1.9	21	89	5	62	7	23	20	48	1.75
35343494--35343580	20	4.3	20	71	7	59	11	25	20	42	1.86
35346097--35346138	23	1.9	21	90	9	66	52	14	9	23	1.71
35359553--35359591	15	2.6	15	83	0	60	48	0	0	51	1.00
35365508--35365536	4	7.2	4	100	0	58	0	24	48	27	1.51
35370877--35370951	33	2.2	34	92	2	125	42	13	6	37	1.70
35371734--35371805	36	2.0	36	94	0	126	26	18	22	33	1.96
35372742--35372780	18	2.2	18	90	9	62	5	20	2	71	1.17
35386898--35387062	45	3.7	45	85	0	233	35	23	13	28	1.92
35397137--35397230	36	2.6	36	94	0	161	22	22	15	39	1.92
35398488--35398562	28	2.7	28	95	0	141	38	13	14	33	1.85
35398555--35398601	14	3.3	14	77	14	51	46	12	12	27	1.78
35399999--35400178	41	4.4	41	77	4	177	22	29	13	35	1.92
35399999--35400178	82	2.2	81	84	3	238	22	29	13	35	1.92
35423245--35423338	45	2.1	45	91	0	152	31	24	18	25	1.97
35426340--35426452	51	2.3	51	86	6	151	27	15	30	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35428118--35428208	26	3.5	26	77	8	94	29	37	18	14	1.90
35428117--35428188	27	2.7	27	82	8	94	31	36	18	13	1.90
35431048--35431119	29	2.5	29	86	0	99	37	22	20	19	1.94
35444237--35444300	29	2.1	31	86	11	89	48	1	0	50	1.10
35449417--35449458	11	3.8	11	90	0	66	21	45	11	21	1.84
35449417--35449458	22	1.9	22	95	0	75	21	45	11	21	1.84
35449556--35449602	18	2.6	18	100	0	94	55	4	0	40	1.19
35457009--35457037	13	2.2	13	100	0	58	20	13	27	37	1.91
35462194--35462231	20	1.9	19	89	5	58	21	31	0	47	1.51
35464464--35464635	53	3.2	54	79	7	136	21	33	21	23	1.97
35464507--35464635	53	2.4	54	88	1	188	20	32	21	24	1.98
35465760--35465809	26	1.9	26	95	0	91	40	20	16	24	1.91
35465764--35465821	26	2.2	26	84	0	71	37	25	15	20	1.92
35483176--35483206	11	2.8	11	90	0	53	19	32	19	29	1.96
35486984--35487022	20	2.0	20	85	10	53	20	7	15	56	1.63
35489990--35490129	48	2.9	48	83	7	169	29	22	27	20	1.98
35498850--35498875	3	8.7	3	100	0	52	34	0	0	65	0.93
35501648--35501952	27	11.3	27	86	4	348	42	19	13	23	1.87
35501648--35501952	81	3.8	81	85	1	405	42	19	13	23	1.87
35501978--35502040	26	2.4	26	79	12	67	23	11	19	46	1.82
35505382--35505416	17	2.1	17	94	0	61	20	31	5	42	1.75
35509979--35510134	27	5.7	27	82	7	190	42	19	14	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35509979--35510153	27	6.4	27	82	6	124	42	18	16	22	1.88
35509981--35510134	82	1.9	81	86	4	220	43	19	14	22	1.87
35516004--35516068	20	3.3	19	76	4	58	10	33	21	33	1.88
35516005--35516080	40	1.9	40	83	5	100	11	35	21	31	1.89
35522561--35522812	40	6.3	40	78	0	218	25	29	15	30	1.95
35522578--35522811	80	3.0	78	81	3	272	25	28	15	30	1.96
35525764--35525941	45	4.0	45	84	2	227	31	24	16	27	1.97
35530175--35530352	27	6.6	27	84	3	205	29	28	15	26	1.96
35530196--35530351	82	1.9	81	88	3	233	29	28	15	26	1.96
35541682--35541748	33	2.0	33	94	0	116	44	14	16	23	1.85
35543692--35543773	35	2.4	34	81	6	85	9	46	25	18	1.79
35543779--35543807	12	2.3	13	94	5	51	20	6	6	65	1.40
35548918--35549106	94	2.0	94	94	0	333	31	14	21	32	1.93
35566065--35566113	22	2.2	23	82	10	66	42	18	8	30	1.79
35576369--35576443	39	1.9	39	86	5	107	41	14	12	32	1.83
35579509--35579578	25	2.8	24	82	8	86	27	27	14	31	1.95
35582435--35582721	29	9.8	29	78	1	268	22	26	12	39	1.89
35582435--35582728	59	5.0	59	82	0	331	22	26	12	38	1.90
35587886--35587938	16	3.2	16	71	12	54	28	11	1	58	1.43
35593187--35593225	15	2.6	15	87	0	60	2	23	0	74	0.94
35593188--35593269	27	3.0	26	76	20	80	6	18	6	69	1.31
35599649--35599787	43	3.5	43	71	18	163	36	27	14	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35599612--35599823	76	2.8	76	89	1	336	34	27	16	21	1.94
35599768--35599921	33	4.6	33	70	23	124	33	28	18	18	1.95
35599724--35599924	101	2.0	102	93	1	341	33	28	17	20	1.96
35600889--35600921	17	1.9	17	88	11	50	42	15	6	36	1.71
35607153--35607290	43	3.4	43	72	19	161	36	26	15	21	1.93
35607116--35607328	76	2.8	76	91	0	345	34	26	17	21	1.96
35607227--35607430	102	2.0	103	86	2	286	34	25	18	22	1.96
35609473--35609526	26	2.1	26	82	0	63	27	16	20	35	1.94
35609723--35609798	32	2.4	32	90	0	116	17	15	25	42	1.88
35609743--35609934	32	6.0	32	78	7	160	21	21	23	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141